71 |
0.00365 |
0.1656 |
b4478 |
dgoD |
-6.42 |
0.153775 |
171 -- 195 |
38 -- 57 |
D-galactonate dehydratase |
|
_____________170_______________________196\n_____________|_________________________|\n5'-AAA...GCAGC_______A____GUAUC________GUGCA...UGA-3'\n______________AUUUGUU_AGGC_____GAGAGGCA\n______________|:|||:|_|:||_____:|||:|||\n______________UGAACGA_UUCG_____UUCUUCGU\n3'-UUU...UACUU_______A_________________GAAUU...CAA-5'\n_____________|_________________________|\n_____________58________________________37\n |
189 -- 195 |
38 -- 44 |
-17.6382 kcal/mol |
5.02573 kcal/mol |
6.19395 kcal/mol |
170 196@LB@ | |@LB@5'-AAA...GCAGC A GUAUC GUGCA...UGA-3'@LB@ AUUUGUU AGGC GAGAGGCA@LB@ |:|||:| |:|| :|||:|||@LB@ UGAACGA UUCG UUCUUCGU@LB@3'-UUU...UACUU A GAAUU...CAA-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -6.42 kcal/mol@LB@Hybridization Energy -17.6382 kcal/mol@LB@Unfolding Energy - mRNA 5.02573 kcal/mol@LB@Unfolding Energy - sRNA 6.19395 kcal/mol@LB@@LB@Position - mRNA 171 -- 195@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 38 -- 44@LB@ |
3 |
4.385e-06 |
0.004708 |
b3749 |
rbsA |
-11.98 |
0.003917 |
29 -- 86 |
17 -- 57 |
D-ribose ABC transporter ATPase |
|
_____________28_________________________________________________________87\n_____________|__________________________________________________________|\n5'-UAA...UGCUC___CAC________GCUGCAAAAACACCAG____A___CAUU________________CGCAU...UGG-3'\n______________ACU___CUUGAGCA________________GGAA_UAC____GAAAUUCGUUACACCA\n______________|||___|||:||||________________:|||_:||____:|||||||||||||||\n______________UGA___GAAUUCGU________________UCUU_GUG____UUUUAAGCAAUGUGGU\n3'-UUU...UACUU___AC_____________________________C___AAUU________________CCUUU...CAA-5'\n_____________|__________________________________________________________|\n_____________58_________________________________________________________16\n |
80 -- 86 |
17 -- 23 |
-33.7219 kcal/mol |
7.92362 kcal/mol |
13.8209 kcal/mol |
28 87@LB@ | |@LB@5'-UAA...UGCUC CAC GCUGCAAAAACACCAG A CAUU CGCAU...UGG-3'@LB@ ACU CUUGAGCA GGAA UAC GAAAUUCGUUACACCA@LB@ ||| |||:|||| :||| :|| :|||||||||||||||@LB@ UGA GAAUUCGU UCUU GUG UUUUAAGCAAUGUGGU@LB@3'-UUU...UACUU AC C AAUU CCUUU...CAA-5'@LB@ | |@LB@ 58 16@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -33.7219 kcal/mol@LB@Unfolding Energy - mRNA 7.92362 kcal/mol@LB@Unfolding Energy - sRNA 13.8209 kcal/mol@LB@@LB@Position - mRNA 29 -- 86@LB@Position - sRNA 17 -- 57@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 17 -- 23@LB@ |
98 |
0.007325 |
0.239 |
b4171 |
miaA |
-8.40 |
0.046782 |
42 -- 58 |
5 -- 24 |
delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase |
|
_____________41___________________59\n_____________|____________________|\n5'-GAA...GUGGA____________________AGCGA...UUU-3'\n______________UUGCAC___GAAAUCUGAUG\n______________||:|||___|||||||||||\n______________AAUGUG___CUUUAGACUAC\n3'-UUU...UAAGC______GUC___________ACAA-5'\n_____________|____________________|\n_____________25___________________4\n |
52 -- 58 |
5 -- 11 |
-19.996 kcal/mol |
4.00751 kcal/mol |
7.58501 kcal/mol |
41 59@LB@ | |@LB@5'-GAA...GUGGA AGCGA...UUU-3'@LB@ UUGCAC GAAAUCUGAUG@LB@ ||:||| |||||||||||@LB@ AAUGUG CUUUAGACUAC@LB@3'-UUU...UAAGC GUC ACAA-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -19.996 kcal/mol@LB@Unfolding Energy - mRNA 4.00751 kcal/mol@LB@Unfolding Energy - sRNA 7.58501 kcal/mol@LB@@LB@Position - mRNA 42 -- 58@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 5 -- 11@LB@ |
105 |
0.008762 |
0.2688 |
b2735 |
ygbI |
-7.10 |
0.103888 |
185 -- 196 |
38 -- 49 |
DeoR family putative transcriptional regulator |
|
_____________184__________197\n_____________|____________|\n5'-UUC...GGACA___G________AAAGU...AUA-3'\n______________AAG_AAGGAGCA\n______________|||_|||:||||\n______________UUC_UUCUUCGU\n3'-UUU...ACGAA___G________GAAUU...CAA-5'\n_____________|____________|\n_____________50___________37\n |
190 -- 196 |
38 -- 44 |
-14.2659 kcal/mol |
1.1364 kcal/mol |
6.02696 kcal/mol |
184 197@LB@ | |@LB@5'-UUC...GGACA G AAAGU...AUA-3'@LB@ AAG AAGGAGCA@LB@ ||| |||:||||@LB@ UUC UUCUUCGU@LB@3'-UUU...ACGAA G GAAUU...CAA-5'@LB@ | |@LB@ 50 37@LB@@LB@@LB@Energy -7.10 kcal/mol@LB@Hybridization Energy -14.2659 kcal/mol@LB@Unfolding Energy - mRNA 1.1364 kcal/mol@LB@Unfolding Energy - sRNA 6.02696 kcal/mol@LB@@LB@Position - mRNA 185 -- 196@LB@Position - sRNA 38 -- 49@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 38 -- 44@LB@ |
161 |
0.01751 |
0.3504 |
b3394 |
hofN |
-4.92 |
0.333288 |
275 -- 286 |
18 -- 29 |
DNA catabolic putative fimbrial assembly protein |
|
_____________274__________287\n_____________|____________|\n5'-UGG...CUGAU____________UCUGC...CCG-3'\n______________GUUCGUUGCGCC\n______________:||||||:|:||\n______________UAAGCAAUGUGG\n3'-UUU...UUUUU____________UCCUU...CAA-5'\n_____________|____________|\n_____________30___________17\n |
275 -- 281 |
23 -- 29 |
-17.9024 kcal/mol |
4.53191 kcal/mol |
8.4513 kcal/mol |
274 287@LB@ | |@LB@5'-UGG...CUGAU UCUGC...CCG-3'@LB@ GUUCGUUGCGCC@LB@ :||||||:|:||@LB@ UAAGCAAUGUGG@LB@3'-UUU...UUUUU UCCUU...CAA-5'@LB@ | |@LB@ 30 17@LB@@LB@@LB@Energy -4.92 kcal/mol@LB@Hybridization Energy -17.9024 kcal/mol@LB@Unfolding Energy - mRNA 4.53191 kcal/mol@LB@Unfolding Energy - sRNA 8.4513 kcal/mol@LB@@LB@Position - mRNA 275 -- 286@LB@Position - sRNA 18 -- 29@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 23 -- 29@LB@ |
111 |
0.009564 |
0.2693 |
b2040 |
rfbD |
-5.00 |
0.321114 |
87 -- 99 |
24 -- 42 |
dTDP-L-rhamnose synthase NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit |
|
_____________86__________________100\n_____________|___________________|\n5'-GAU...UUUGA___________________AAAAC...CUA-3'\n______________GAGCG______GGAUUCGU\n______________:|||:______::||||||\n______________UUCGU______UUUAAGCA\n3'-UUU...CGUUC_____GAAUUU________AUGUG...CAA-5'\n_____________|___________________|\n_____________43__________________23\n |
93 -- 99 |
24 -- 30 |
-9.51502 kcal/mol |
2.86783 kcal/mol |
1.64896 kcal/mol |
86 100@LB@ | |@LB@5'-GAU...UUUGA AAAAC...CUA-3'@LB@ GAGCG GGAUUCGU@LB@ :|||: ::||||||@LB@ UUCGU UUUAAGCA@LB@3'-UUU...CGUUC GAAUUU AUGUG...CAA-5'@LB@ | |@LB@ 43 23@LB@@LB@@LB@Energy -5.00 kcal/mol@LB@Hybridization Energy -9.51502 kcal/mol@LB@Unfolding Energy - mRNA 2.86783 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 87 -- 99@LB@Position - sRNA 24 -- 42@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 24 -- 30@LB@ |
86 |
0.005829 |
0.217 |
b2399 |
yfeD |
-9.44 |
0.023742 |
136 -- 182 |
13 -- 56 |
DUF1323 family putative DNA-binding protein |
|
_____________135______________________________________________183\n_____________|________________________________________________|\n5'-UGA...ACAUC_______CU________G_A___UC____________ACGC_______UUCGC...GGA-3'\n______________CUUGCUU__GCGGGAAG_G_UUA__GGAUU_GUUACA____UUAGGGA\n______________|||||||__||::||||_:_|||__::|||_||||||____::|||:|\n______________GAACGAA__CGUUCUUC_U_AAU__UUUAA_CAAUGU____GGUCCUU\n3'-UUU...ACUUU_______UU________G_G___UU_____G_________________UAGAC...CAA-5'\n_____________|________________________________________________|\n_____________57_______________________________________________12\n |
146 -- 152 |
40 -- 46 |
-35.8501 kcal/mol |
12.5789 kcal/mol |
13.8302 kcal/mol |
135 183@LB@ | |@LB@5'-UGA...ACAUC CU G A UC ACGC UUCGC...GGA-3'@LB@ CUUGCUU GCGGGAAG G UUA GGAUU GUUACA UUAGGGA@LB@ ||||||| ||::|||| : ||| ::||| |||||| ::|||:|@LB@ GAACGAA CGUUCUUC U AAU UUUAA CAAUGU GGUCCUU@LB@3'-UUU...ACUUU UU G G UU G UAGAC...CAA-5'@LB@ | |@LB@ 57 12@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -35.8501 kcal/mol@LB@Unfolding Energy - mRNA 12.5789 kcal/mol@LB@Unfolding Energy - sRNA 13.8302 kcal/mol@LB@@LB@Position - mRNA 136 -- 182@LB@Position - sRNA 13 -- 56@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 40 -- 46@LB@ |
197 |
0.0237 |
0.3864 |
b4001 |
yjaH |
-6.58 |
0.140477 |
149 -- 175 |
29 -- 57 |
DUF1481 family putative lipoprotein |
|
_____________148____________________________176\n_____________|______________________________|\n5'-UGG...CCGGC________CU____________________CGCAG...AUA-3'\n______________AUUUGUUU__GGCA__AGGCACU_GAAAGA\n______________|:|||:||__:|||__|:|||||_:|||:|\n______________UGAACGAA__UCGU__UUCGUGA_UUUUUU\n3'-UUU...UACUU________U_____UC_______A______AAGCA...CAA-5'\n_____________|______________________________|\n_____________58_____________________________28\n |
163 -- 169 |
36 -- 42 |
-19.7163 kcal/mol |
6.91297 kcal/mol |
6.22375 kcal/mol |
148 176@LB@ | |@LB@5'-UGG...CCGGC CU CGCAG...AUA-3'@LB@ AUUUGUUU GGCA AGGCACU GAAAGA@LB@ |:|||:|| :||| |:||||| :|||:|@LB@ UGAACGAA UCGU UUCGUGA UUUUUU@LB@3'-UUU...UACUU U UC A AAGCA...CAA-5'@LB@ | |@LB@ 58 28@LB@@LB@@LB@Energy -6.58 kcal/mol@LB@Hybridization Energy -19.7163 kcal/mol@LB@Unfolding Energy - mRNA 6.91297 kcal/mol@LB@Unfolding Energy - sRNA 6.22375 kcal/mol@LB@@LB@Position - mRNA 149 -- 175@LB@Position - sRNA 29 -- 57@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 36 -- 42@LB@ |
88 |
0.006209 |
0.2266 |
b1643 |
ydhI |
-11.55 |
0.005389 |
141 -- 153 |
28 -- 40 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________140___________154\n_____________|_____________|\n5'-UUU...UUUUC_____________AUUUA...GAU-3'\n______________GCACUUAAAGAAU\n______________|||||||||:|||\n______________CGUGAAUUUUUUA\n3'-UUU...UUCUU_____________AGCAA...CAA-5'\n_____________|_____________|\n_____________41____________27\n |
144 -- 150 |
31 -- 37 |
-15.2864 kcal/mol |
2.10141 kcal/mol |
1.63611 kcal/mol |
140 154@LB@ | |@LB@5'-UUU...UUUUC AUUUA...GAU-3'@LB@ GCACUUAAAGAAU@LB@ |||||||||:|||@LB@ CGUGAAUUUUUUA@LB@3'-UUU...UUCUU AGCAA...CAA-5'@LB@ | |@LB@ 41 27@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -15.2864 kcal/mol@LB@Unfolding Energy - mRNA 2.10141 kcal/mol@LB@Unfolding Energy - sRNA 1.63611 kcal/mol@LB@@LB@Position - mRNA 141 -- 153@LB@Position - sRNA 28 -- 40@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 31 -- 37@LB@ |
12 |
0.0001753 |
0.04706 |
b3676 |
yidH |
-12.46 |
0.002725 |
279 -- 300 |
7 -- 26 |
DUF202 family inner membrane protein |
|
_____________278___________________300\n_____________|_____________________|\n5'-GCC...GGAUC___AC__________UU_____-3'\n______________CGU__UGCACUAGGA__UCUGG\n______________|||__|:|||:||||__||||:\n______________GCA__AUGUGGUCCU__AGACU\n3'-UUU...UUUAA_______________UU_____ACACAA-5'\n_____________|______________________|\n_____________27_____________________6\n |
286 -- 292 |
15 -- 21 |
-23.8048 kcal/mol |
2.98352 kcal/mol |
8.36616 kcal/mol |
278 300@LB@ | |@LB@5'-GCC...GGAUC AC UU -3'@LB@ CGU UGCACUAGGA UCUGG@LB@ ||| |:|||:|||| ||||:@LB@ GCA AUGUGGUCCU AGACU@LB@3'-UUU...UUUAA UU ACACAA-5'@LB@ | |@LB@ 27 6@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -23.8048 kcal/mol@LB@Unfolding Energy - mRNA 2.98352 kcal/mol@LB@Unfolding Energy - sRNA 8.36616 kcal/mol@LB@@LB@Position - mRNA 279 -- 300@LB@Position - sRNA 7 -- 26@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 15 -- 21@LB@ |