63 |
0.004757 |
0.2539 |
b1342 |
ydaN |
-13.10 |
0.024145 |
140 -- 198 |
7 -- 70 |
putative Zn(II) transporter |
|
_____________139_______________________________________________________________199\n_____________|_________________________________________________________________|\n5'-CGU...AUGAG______CGU__________CA_____A____A___UAC_______UGCGU_______________CUGUG...AUG-3'\n______________AUGUUG___AA_CAG_GGC_____GA_GGCU_GAC___AAAAUAA______UGAUGAUGGAGGCA\n______________||||||___||_|||_|||_____:|_|||:_:||___|||||||______|||::||::|||||\n______________UACAAC___UU_GUC_CCG_____UU_CCGG_UUG___UUUUAUU______ACUGUUAUUUCCGU\n3'-UUU...AAAUA______CUU__A___A___UUACG__A____G___UC________UUAGAC______________AUAUUG-5'\n_____________|_________________________________________________________________|\n_____________71________________________________________________________________6\n |
192 -- 198 |
7 -- 13 |
-39.9747 kcal/mol |
14.7113 kcal/mol |
12.1606 kcal/mol |
139 199@LB@ | |@LB@5'-CGU...AUGAG CGU CA A A UAC UGCGU CUGUG...AUG-3'@LB@ AUGUUG AA CAG GGC GA GGCU GAC AAAAUAA UGAUGAUGGAGGCA@LB@ |||||| || ||| ||| :| |||: :|| ||||||| |||::||::|||||@LB@ UACAAC UU GUC CCG UU CCGG UUG UUUUAUU ACUGUUAUUUCCGU@LB@3'-UUU...AAAUA CUU A A UUACG A G UC UUAGAC AUAUUG-5'@LB@ | |@LB@ 71 6@LB@@LB@@LB@Energy -13.10 kcal/mol@LB@Hybridization Energy -39.9747 kcal/mol@LB@Unfolding Energy - mRNA 14.7113 kcal/mol@LB@Unfolding Energy - sRNA 12.1606 kcal/mol@LB@@LB@Position - mRNA 140 -- 198@LB@Position - sRNA 7 -- 70@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
147 |
0.01713 |
0.3828 |
b3354 |
yheU |
-14.93 |
0.008191 |
201 -- 276 |
7 -- 70 |
UPF0270 family protein |
|
_____________200_____________________________________________________________________________277\n_____________|_______________________________________________________________________________|\n5'-CUG...AAAUC______AU_____C_______GACCUCUCC_____AACGC________UU____GAAAGCUU____UUAC_________CCGAU...GUA-3'\n______________AUGUUG_____UC_GUGGCAA_________CCCGA_____UGGAAAAU__AAUU________UGUG____GUGAAGGCA\n______________||||||_____||_|||||||_________|||:|_____::||||||__|||:________||||____:|:||||||\n______________UACAAC_____AG_CACCGUU_________GGGUU_____GUCUUUUA__UUAG________ACAC____UAUUUCCGU\n3'-UUU...AAAUA______CUUUU__U_______ACGUUACC___________________UU________________UGU__________AUAUUG-5'\n_____________|_______________________________________________________________________________|\n_____________71______________________________________________________________________________6\n |
270 -- 276 |
7 -- 13 |
-40.9535 kcal/mol |
13.8654 kcal/mol |
12.1606 kcal/mol |
200 277@LB@ | |@LB@5'-CUG...AAAUC AU C GACCUCUCC AACGC UU GAAAGCUU UUAC CCGAU...GUA-3'@LB@ AUGUUG UC GUGGCAA CCCGA UGGAAAAU AAUU UGUG GUGAAGGCA@LB@ |||||| || ||||||| |||:| ::|||||| |||: |||| :|:||||||@LB@ UACAAC AG CACCGUU GGGUU GUCUUUUA UUAG ACAC UAUUUCCGU@LB@3'-UUU...AAAUA CUUUU U ACGUUACC UU UGU AUAUUG-5'@LB@ | |@LB@ 71 6@LB@@LB@@LB@Energy -14.93 kcal/mol@LB@Hybridization Energy -40.9535 kcal/mol@LB@Unfolding Energy - mRNA 13.8654 kcal/mol@LB@Unfolding Energy - sRNA 12.1606 kcal/mol@LB@@LB@Position - mRNA 201 -- 276@LB@Position - sRNA 7 -- 70@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 7 -- 13@LB@ |
70 |
0.005852 |
0.2791 |
b3524 |
yhjG |
-5.99 |
0.576071 |
198 -- 212 |
7 -- 18 |
putative inner membrane-anchored periplasmic AsmA family protein |
|
_____________197_____________213\n_____________|_______________|\n5'-UUG...AGCGA_______GCA_____GGCAA...GAC-3'\n______________ACGAUGA___AGGCA\n______________||:||:|___|||||\n______________UGUUAUU___UCCGU\n3'-UUU...GACAC_______________AUAUUG-5'\n_____________|_______________|\n_____________19______________6\n |
198 -- 204 |
12 -- 18 |
-10.9915 kcal/mol |
1.73561 kcal/mol |
3.26755 kcal/mol |
197 213@LB@ | |@LB@5'-UUG...AGCGA GCA GGCAA...GAC-3'@LB@ ACGAUGA AGGCA@LB@ ||:||:| |||||@LB@ UGUUAUU UCCGU@LB@3'-UUU...GACAC AUAUUG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -5.99 kcal/mol@LB@Hybridization Energy -10.9915 kcal/mol@LB@Unfolding Energy - mRNA 1.73561 kcal/mol@LB@Unfolding Energy - sRNA 3.26755 kcal/mol@LB@@LB@Position - mRNA 198 -- 212@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
50 |
0.003719 |
0.237 |
b3705 |
yidC |
-9.36 |
0.163545 |
61 -- 100 |
7 -- 65 |
membrane protein insertase |
|
_____________60__________________________________________________________101\n_____________|___________________________________________________________|\n5'-CGC...GCUAC____UU____A____U____CA_____________________________________GUUGG...CCC-3'\n______________GGAA_____G_GGCA_UGCG__GGUUU___GGA___________GUGAUA__AAAGGCA\n______________||||_____|_||||_|||:__||:::___:||___________||||:|__|||||||\n______________CCUU_____C_CCGU_ACGU__CCGGG___UCU___________CACUGU__UUUCCGU\n3'-UUU...UACAA____UUAGU_A____U____UA_____UUG___UUUAUUUUAGA______UA_______AUAUUG-5'\n_____________|___________________________________________________________|\n_____________66__________________________________________________________6\n |
94 -- 100 |
7 -- 13 |
-30.9326 kcal/mol |
9.41756 kcal/mol |
12.1538 kcal/mol |
60 101@LB@ | |@LB@5'-CGC...GCUAC UU A U CA GUUGG...CCC-3'@LB@ GGAA G GGCA UGCG GGUUU GGA GUGAUA AAAGGCA@LB@ |||| | |||| |||: ||::: :|| ||||:| |||||||@LB@ CCUU C CCGU ACGU CCGGG UCU CACUGU UUUCCGU@LB@3'-UUU...UACAA UUAGU A U UA UUG UUUAUUUUAGA UA AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -30.9326 kcal/mol@LB@Unfolding Energy - mRNA 9.41756 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 61 -- 100@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 7 -- 13@LB@ |
127 |
0.01373 |
0.3614 |
b0463 |
acrA |
-13.78 |
0.016343 |
252 -- 289 |
8 -- 54 |
multidrug efflux system |
|
_____________251________________________________________________290\n_____________|__________________________________________________|\n5'-GCC...UCUCA________UUA_____U________________________C__AC____CCAAC...GUG-3'\n______________GGCA__GC____GCCC_AACAGGA_________UGUGACGA_AA__AGGC\n______________||||__||____||||_|||||:|_________||||||:|_||__||||\n______________CCGU__CG____CGGG_UUGUCUU_________ACACUGUU_UU__UCCG\n3'-UUU...AGUCA____UA__UUAC____________UUAUUUUAG________A________UAUAUUG-5'\n_____________|__________________________________________________|\n_____________55_________________________________________________7\n |
274 -- 280 |
15 -- 21 |
-34.7713 kcal/mol |
8.97181 kcal/mol |
12.019 kcal/mol |
251 290@LB@ | |@LB@5'-GCC...UCUCA UUA U C AC CCAAC...GUG-3'@LB@ GGCA GC GCCC AACAGGA UGUGACGA AA AGGC@LB@ |||| || |||| |||||:| ||||||:| || ||||@LB@ CCGU CG CGGG UUGUCUU ACACUGUU UU UCCG@LB@3'-UUU...AGUCA UA UUAC UUAUUUUAG A UAUAUUG-5'@LB@ | |@LB@ 55 7@LB@@LB@@LB@Energy -13.78 kcal/mol@LB@Hybridization Energy -34.7713 kcal/mol@LB@Unfolding Energy - mRNA 8.97181 kcal/mol@LB@Unfolding Energy - sRNA 12.019 kcal/mol@LB@@LB@Position - mRNA 252 -- 289@LB@Position - sRNA 8 -- 54@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 15 -- 21@LB@ |
167 |
0.01994 |
0.3993 |
b1982 |
amn |
-7.06 |
0.411594 |
174 -- 215 |
8 -- 54 |
AMP nucleosidase |
|
_____________173______________________________________________216\n_____________|________________________________________________|\n5'-UUU...UGUGC_____U____________________CACACA___A____________UCCGG...GCA-3'\n______________GGUAA_UGU_AUGG___AACAGGAGA_______UG__AUAAUAAGGGC\n______________||:||_||:_||||___|||||:|:|_______||__|:|||||:|||\n______________CCGUU_ACG_UACC___UUGUCUUUU_______AC__UGUUAUUUCCG\n3'-UUU...AGUCA_________U____GGG_________AUUUUAG__AC___________UAUAUUG-5'\n_____________|________________________________________________|\n_____________55_______________________________________________7\n |
209 -- 215 |
8 -- 14 |
-29.9928 kcal/mol |
10.9089 kcal/mol |
12.019 kcal/mol |
173 216@LB@ | |@LB@5'-UUU...UGUGC U CACACA A UCCGG...GCA-3'@LB@ GGUAA UGU AUGG AACAGGAGA UG AUAAUAAGGGC@LB@ ||:|| ||: |||| |||||:|:| || |:|||||:|||@LB@ CCGUU ACG UACC UUGUCUUUU AC UGUUAUUUCCG@LB@3'-UUU...AGUCA U GGG AUUUUAG AC UAUAUUG-5'@LB@ | |@LB@ 55 7@LB@@LB@@LB@Energy -7.06 kcal/mol@LB@Hybridization Energy -29.9928 kcal/mol@LB@Unfolding Energy - mRNA 10.9089 kcal/mol@LB@Unfolding Energy - sRNA 12.019 kcal/mol@LB@@LB@Position - mRNA 174 -- 215@LB@Position - sRNA 8 -- 54@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 8 -- 14@LB@ |
17 |
0.0007572 |
0.1438 |
b2512 |
bamB |
-10.25 |
0.108120 |
60 -- 97 |
8 -- 56 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________59________________________________________________98\n_____________|_________________________________________________|\n5'-GCU...CCUGC_______A___U_____G____AAG_________________GC_____GCGCG...CCC-3'\n______________GUGGUGA_GCA_U_GCU_AGCA_____________GUGAUAA__AAGGU\n______________||||::|_|||_|_||:_|:||_____________||||:||__||||:\n______________CACCGUU_CGU_A_CGG_UUGU_____________CACUGUU__UUCCG\n3'-UUU...UUAGU_______A___U_C___G____CUUUUAUUUUAGA_______AU_____UAUAUUG-5'\n_____________|_________________________________________________|\n_____________57________________________________________________7\n |
84 -- 90 |
15 -- 21 |
-31.6141 kcal/mol |
9.34469 kcal/mol |
12.0216 kcal/mol |
59 98@LB@ | |@LB@5'-GCU...CCUGC A U G AAG GC GCGCG...CCC-3'@LB@ GUGGUGA GCA U GCU AGCA GUGAUAA AAGGU@LB@ ||||::| ||| | ||: |:|| ||||:|| ||||:@LB@ CACCGUU CGU A CGG UUGU CACUGUU UUCCG@LB@3'-UUU...UUAGU A U C G CUUUUAUUUUAGA AU UAUAUUG-5'@LB@ | |@LB@ 57 7@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -31.6141 kcal/mol@LB@Unfolding Energy - mRNA 9.34469 kcal/mol@LB@Unfolding Energy - sRNA 12.0216 kcal/mol@LB@@LB@Position - mRNA 60 -- 97@LB@Position - sRNA 8 -- 56@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 15 -- 21@LB@ |
61 |
0.004706 |
0.2539 |
b3713 |
chrR |
-11.93 |
0.045896 |
122 -- 163 |
8 -- 58 |
chromate reductase Class I flavoprotein |
|
_____________121____________________________________________________164\n_____________|______________________________________________________|\n5'-ACG...CCUAC___CC__A_______UUUU_____________________CU___C________UUUUU...CGA-3'\n______________CAG__GG_UGAUGCG____GCCCAAC___________UCU___AC_GUGAAGGC\n______________|||__||_::||||:____|||||||___________|||___||_:|:|||||\n______________GUC__CC_GUUACGU____CGGGUUG___________AGA___UG_UAUUUCCG\n3'-UUU...UUUUA___A___________UAC________UCUUUUAUUUU___CAC__U________UAUAUUG-5'\n_____________|______________________________________________________|\n_____________59_____________________________________________________7\n |
157 -- 163 |
8 -- 14 |
-33.8478 kcal/mol |
9.79541 kcal/mol |
12.1181 kcal/mol |
121 164@LB@ | |@LB@5'-ACG...CCUAC CC A UUUU CU C UUUUU...CGA-3'@LB@ CAG GG UGAUGCG GCCCAAC UCU AC GUGAAGGC@LB@ ||| || ::||||: ||||||| ||| || :|:|||||@LB@ GUC CC GUUACGU CGGGUUG AGA UG UAUUUCCG@LB@3'-UUU...UUUUA A UAC UCUUUUAUUUU CAC U UAUAUUG-5'@LB@ | |@LB@ 59 7@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -33.8478 kcal/mol@LB@Unfolding Energy - mRNA 9.79541 kcal/mol@LB@Unfolding Energy - sRNA 12.1181 kcal/mol@LB@@LB@Position - mRNA 122 -- 163@LB@Position - sRNA 8 -- 58@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 8 -- 14@LB@ |
189 |
0.02329 |
0.4145 |
b1823 |
cspC |
-8.37 |
0.250499 |
214 -- 248 |
8 -- 63 |
stress protein member of the CspA-family |
|
_____________213______________________________________________________249\n_____________|________________________________________________________|\n5'-UAU...GAUUA____________UA__________________________________________UUUGG...UCU-3'\n______________AAGGUCA__GGU_____AGUGGUUCAAC________GAGUC________UAAAGGU\n______________||::|||__||:_____|:|||::||||________:|:||________||||||:\n______________UUUUAGU__CCG_____UUACCGGGUUG________UUUAG________AUUUCCG\n3'-UUU...CAACC_______CA___UUACG___________UCUUUUAU_____ACACUGUU_______UAUAUUG-5'\n_____________|________________________________________________________|\n_____________64_______________________________________________________7\n |
242 -- 248 |
8 -- 14 |
-25.9028 kcal/mol |
5.39828 kcal/mol |
12.1311 kcal/mol |
213 249@LB@ | |@LB@5'-UAU...GAUUA UA UUUGG...UCU-3'@LB@ AAGGUCA GGU AGUGGUUCAAC GAGUC UAAAGGU@LB@ ||::||| ||: |:|||::|||| :|:|| ||||||:@LB@ UUUUAGU CCG UUACCGGGUUG UUUAG AUUUCCG@LB@3'-UUU...CAACC CA UUACG UCUUUUAU ACACUGUU UAUAUUG-5'@LB@ | |@LB@ 64 7@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -25.9028 kcal/mol@LB@Unfolding Energy - mRNA 5.39828 kcal/mol@LB@Unfolding Energy - sRNA 12.1311 kcal/mol@LB@@LB@Position - mRNA 214 -- 248@LB@Position - sRNA 8 -- 63@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 8 -- 14@LB@ |
115 |
0.0114 |
0.3326 |
b2531 |
iscR |
-8.61 |
0.227442 |
42 -- 64 |
8 -- 31 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________41_______________________65\n_____________|________________________|\n5'-AUG...GCCAC_______AAA______C_______UAAAU...AAC-3'\n______________GAUAAAA____UGGCA_UGAAGGU\n______________:||||||____||:||_|:||||:\n______________UUAUUUU____ACUGU_AUUUCCG\n3'-UUU...GUCUU_______AGAC_____U_______UAUAUUG-5'\n_____________|________________________|\n_____________32_______________________7\n |
58 -- 64 |
8 -- 14 |
-15.5579 kcal/mol |
1.96266 kcal/mol |
4.98963 kcal/mol |
41 65@LB@ | |@LB@5'-AUG...GCCAC AAA C UAAAU...AAC-3'@LB@ GAUAAAA UGGCA UGAAGGU@LB@ :|||||| ||:|| |:||||:@LB@ UUAUUUU ACUGU AUUUCCG@LB@3'-UUU...GUCUU AGAC U UAUAUUG-5'@LB@ | |@LB@ 32 7@LB@@LB@@LB@Energy -8.61 kcal/mol@LB@Hybridization Energy -15.5579 kcal/mol@LB@Unfolding Energy - mRNA 1.96266 kcal/mol@LB@Unfolding Energy - sRNA 4.98963 kcal/mol@LB@@LB@Position - mRNA 42 -- 64@LB@Position - sRNA 8 -- 31@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 8 -- 14@LB@ |