15 |
2.583e-05 |
0.007914 |
pa3049 |
rmf |
-22.33 |
0.000014 |
230 -- 282 |
40 -- 88 |
ribosome modulation factor |
|
_____________229____________________________________________________283\n_____________|______________________________________________________|\n5'-CGA...UUGGA________UU_U_______UUA__AGAA____AUA______AA___________UUUGU...AUC-3'\n______________AAGAG_CC__C_UGCGUGG___UC____CGGC___ACCGGU__AUCUCGUGAUC\n______________|||||_||__|_|||||||___||____|:||___|||||:__||||||:||:|\n______________UUCUC_GG__G_ACGCACC___AG____GUCG___UGGCCG__UAGAGCGCUGG\n3'-UUU...UAGAC_____A__CU_________CAG__A_______AA_______AC___________UCAAC...GUU-5'\n_____________|______________________________________________________|\n_____________89_____________________________________________________39\n |
276 -- 282 |
40 -- 46 |
-52.7199 kcal/mol |
11.3783 kcal/mol |
19.0139 kcal/mol |
229 283@LB@ | |@LB@5'-CGA...UUGGA UU U UUA AGAA AUA AA UUUGU...AUC-3'@LB@ AAGAG CC C UGCGUGG UC CGGC ACCGGU AUCUCGUGAUC@LB@ ||||| || | ||||||| || |:|| |||||: ||||||:||:|@LB@ UUCUC GG G ACGCACC AG GUCG UGGCCG UAGAGCGCUGG@LB@3'-UUU...UAGAC A CU CAG A AA AC UCAAC...GUU-5'@LB@ | |@LB@ 89 39@LB@@LB@@LB@Energy -22.33 kcal/mol@LB@Hybridization Energy -52.7199 kcal/mol@LB@Unfolding Energy - mRNA 11.3783 kcal/mol@LB@Unfolding Energy - sRNA 19.0139 kcal/mol@LB@@LB@Position - mRNA 230 -- 282@LB@Position - sRNA 40 -- 88@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 40 -- 46@LB@ |
164 |
0.004161 |
0.1159 |
pa4420 |
N/A |
-11.64 |
0.078545 |
165 -- 187 |
40 -- 62 |
S-adenosyl-methyltransferase MraW |
|
_____________164______________________188\n_____________|________________________|\n5'-GAC...GGUGG_________AC__A__A_______UGAUC...GAA-3'\n______________GC_UGCCGG__GA_CU_CGCGACC\n______________||_|:||||__||_||_|||||||\n______________CG_AUGGCC__CU_GA_GCGCUGG\n3'-UUU...AGAGU__A______GA__A__________UCAAC...GUU-5'\n_____________|________________________|\n_____________63_______________________39\n |
181 -- 187 |
40 -- 46 |
-28.7872 kcal/mol |
5.30942 kcal/mol |
11.8411 kcal/mol |
164 188@LB@ | |@LB@5'-GAC...GGUGG AC A A UGAUC...GAA-3'@LB@ GC UGCCGG GA CU CGCGACC@LB@ || |:|||| || || |||||||@LB@ CG AUGGCC CU GA GCGCUGG@LB@3'-UUU...AGAGU A GA A UCAAC...GUU-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -11.64 kcal/mol@LB@Hybridization Energy -28.7872 kcal/mol@LB@Unfolding Energy - mRNA 5.30942 kcal/mol@LB@Unfolding Energy - sRNA 11.8411 kcal/mol@LB@@LB@Position - mRNA 165 -- 187@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 40 -- 46@LB@ |
79 |
0.0008761 |
0.05078 |
pa2577 |
N/A |
-12.88 |
0.038908 |
242 -- 256 |
40 -- 55 |
transcriptional regulator |
|
_____________241______________257\n_____________|________________|\n5'-CCA...CUCAU________________GUCCC...CGA-3'\n______________GGCUGA_CUCGCGACU\n______________||||||_||||||||:\n______________CCGACU_GAGCGCUGG\n3'-UUU...AAUGG______A_________UCAAC...GUU-5'\n_____________|________________|\n_____________56_______________39\n |
250 -- 256 |
40 -- 46 |
-27.0793 kcal/mol |
6.12113 kcal/mol |
8.07531 kcal/mol |
241 257@LB@ | |@LB@5'-CCA...CUCAU GUCCC...CGA-3'@LB@ GGCUGA CUCGCGACU@LB@ |||||| ||||||||:@LB@ CCGACU GAGCGCUGG@LB@3'-UUU...AAUGG A UCAAC...GUU-5'@LB@ | |@LB@ 56 39@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -27.0793 kcal/mol@LB@Unfolding Energy - mRNA 6.12113 kcal/mol@LB@Unfolding Energy - sRNA 8.07531 kcal/mol@LB@@LB@Position - mRNA 242 -- 256@LB@Position - sRNA 40 -- 55@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 40 -- 46@LB@ |
92 |
0.001266 |
0.06327 |
pa1307 |
N/A |
-13.15 |
0.033214 |
250 -- 278 |
41 -- 65 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________249___________________________279\n_____________|_____________________________|\n5'-UGC...CGUCU_______C_____A_____GCAG______GGCGG...GCG-3'\n______________UCAGCUU_ACCGG_CUGAU____CGCGGC\n______________|||||||_|||||_|||||____||||:|\n______________AGUCGAA_UGGCC_GACUA____GCGCUG\n3'-UUU...CAGAG___________________GA________GUCAA...GUU-5'\n_____________|_____________________________|\n_____________66____________________________40\n |
250 -- 256 |
59 -- 65 |
-34.6223 kcal/mol |
8.37343 kcal/mol |
13.1048 kcal/mol |
249 279@LB@ | |@LB@5'-UGC...CGUCU C A GCAG GGCGG...GCG-3'@LB@ UCAGCUU ACCGG CUGAU CGCGGC@LB@ ||||||| ||||| ||||| ||||:|@LB@ AGUCGAA UGGCC GACUA GCGCUG@LB@3'-UUU...CAGAG GA GUCAA...GUU-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -13.15 kcal/mol@LB@Hybridization Energy -34.6223 kcal/mol@LB@Unfolding Energy - mRNA 8.37343 kcal/mol@LB@Unfolding Energy - sRNA 13.1048 kcal/mol@LB@@LB@Position - mRNA 250 -- 278@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 59 -- 65@LB@ |
54 |
0.000431 |
0.03637 |
pa5355 |
glcD |
-9.87 |
0.190611 |
164 -- 178 |
41 -- 54 |
glycolate oxidase subunit GlcD |
|
_____________163_____________179\n_____________|_______________|\n5'-GCU...CGCUU_______C__C____AACCA...AAC-3'\n______________GCUGAUC_CG_CGAC\n______________|||||||_||_||||\n______________CGACUAG_GC_GCUG\n3'-UUU...AUGGC_______A_______GUCAA...GUU-5'\n_____________|_______________|\n_____________55______________40\n |
164 -- 170 |
48 -- 54 |
-19.1225 kcal/mol |
2.27094 kcal/mol |
6.98983 kcal/mol |
163 179@LB@ | |@LB@5'-GCU...CGCUU C C AACCA...AAC-3'@LB@ GCUGAUC CG CGAC@LB@ ||||||| || ||||@LB@ CGACUAG GC GCUG@LB@3'-UUU...AUGGC A GUCAA...GUU-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -19.1225 kcal/mol@LB@Unfolding Energy - mRNA 2.27094 kcal/mol@LB@Unfolding Energy - sRNA 6.98983 kcal/mol@LB@@LB@Position - mRNA 164 -- 178@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 48 -- 54@LB@ |
123 |
0.00223 |
0.08331 |
pa0552 |
pgk |
-10.33 |
0.153234 |
163 -- 259 |
42 -- 119 |
phosphoglycerate kinase |
|
_____________162________________________________________________________________________________________________________260\n_____________|__________________________________________________________________________________________________________|\n5'-CAC...GCGCC_________________CAACAAGUACCCA____CU___U___AUGACCGUGU_______________ACCUCGAC___AAA___AA__G__U_____________GGACC...GCG-3'\n______________GCCGU_____GCCUGAU_____________AGGA__GAU_GUC__________UGAAGA___UGACUG________CUC___GGU__GC_CG_GCUGAUC_CGCGA\n______________:||||_____|||||||_____________||||__|||_:||__________||||||___:|||||________|||___:|:__:|_||_|||||||_|||||\n______________UGGCA_____CGGACUA_____________UCCU__CUA_UAG__________ACUUCU___GCUGAC________GAG___UCG__UG_GC_CGACUAG_GCGCU\n3'-UUU...GUUUU_____CUAAU_______C_____________________U___________________CAG______GCACCCA____AG____AA_____________A_____GGUCA...GUU-5'\n_____________|__________________________________________________________________________________________________________|\n_____________120________________________________________________________________________________________________________41\n |
248 -- 254 |
48 -- 54 |
-58.6651 kcal/mol |
25.0123 kcal/mol |
23.3319 kcal/mol |
162 260@LB@ | |@LB@5'-CAC...GCGCC CAACAAGUACCCA CU U AUGACCGUGU ACCUCGAC AAA AA G U GGACC...GCG-3'@LB@ GCCGU GCCUGAU AGGA GAU GUC UGAAGA UGACUG CUC GGU GC CG GCUGAUC CGCGA@LB@ :|||| ||||||| |||| ||| :|| |||||| :||||| ||| :|: :| || ||||||| |||||@LB@ UGGCA CGGACUA UCCU CUA UAG ACUUCU GCUGAC GAG UCG UG GC CGACUAG GCGCU@LB@3'-UUU...GUUUU CUAAU C U CAG GCACCCA AG AA A GGUCA...GUU-5'@LB@ | |@LB@ 120 41@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -58.6651 kcal/mol@LB@Unfolding Energy - mRNA 25.0123 kcal/mol@LB@Unfolding Energy - sRNA 23.3319 kcal/mol@LB@@LB@Position - mRNA 163 -- 259@LB@Position - sRNA 42 -- 119@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 48 -- 54@LB@ |
154 |
0.003595 |
0.1073 |
pa3974 |
ladS |
-15.87 |
0.005612 |
181 -- 233 |
43 -- 89 |
lost adherence sensor LadS |
|
_____________180_________________________________________________________234\n_____________|___________________________________________________________|\n5'-CUU...CGUUC____________________CA__AUG_______________UUCUCUUUCU_______UUGCC...CCA-3'\n______________GAGGAG_C__ACUGCG_GGG__UC___CGGC__ACUGGCUGA__________UCUUGCG\n______________||:|||_|__||||||_|||__||___|:||__||:||||||__________|||:|||\n______________CUUCUC_G__UGACGC_CCC__AG___GUCG__UGGCCGACU__________AGAGCGC\n3'-UUU...UUAGA______A_GC______A___AG__A______AA__________________________UGGUC...GUU-5'\n_____________|___________________________________________________________|\n_____________90__________________________________________________________42\n |
227 -- 233 |
43 -- 49 |
-49.9041 kcal/mol |
15.1092 kcal/mol |
18.9299 kcal/mol |
180 234@LB@ | |@LB@5'-CUU...CGUUC CA AUG UUCUCUUUCU UUGCC...CCA-3'@LB@ GAGGAG C ACUGCG GGG UC CGGC ACUGGCUGA UCUUGCG@LB@ ||:||| | |||||| ||| || |:|| ||:|||||| |||:|||@LB@ CUUCUC G UGACGC CCC AG GUCG UGGCCGACU AGAGCGC@LB@3'-UUU...UUAGA A GC A AG A AA UGGUC...GUU-5'@LB@ | |@LB@ 90 42@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -49.9041 kcal/mol@LB@Unfolding Energy - mRNA 15.1092 kcal/mol@LB@Unfolding Energy - sRNA 18.9299 kcal/mol@LB@@LB@Position - mRNA 181 -- 233@LB@Position - sRNA 43 -- 89@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 43 -- 49@LB@ |
87 |
0.001101 |
0.05816 |
pa1343 |
N/A |
-16.83 |
0.002748 |
192 -- 238 |
44 -- 87 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________191______________________________________________239\n_____________|________________________________________________|\n5'-UCG...CGCCU_______CCA____CUA_____AUCC_____C_______C_UG_____CGCAC...CCC-3'\n______________GGAGUCC___UGCG____UCUC____UCAGC_UGCUGGC_G__CUCGC\n______________:||||||___||||____||||____|||||_|:|:|||_|__|||||\n______________UCUCAGG___ACGC____AGAG____AGUCG_AUGGCCG_C__GAGCG\n3'-UUU...AGACU_______CUG____ACCC_____________A_______A_UA_____CUGGU...GUU-5'\n_____________|________________________________________________|\n_____________88_______________________________________________43\n |
192 -- 198 |
81 -- 87 |
-49.5275 kcal/mol |
13.8321 kcal/mol |
18.8647 kcal/mol |
191 239@LB@ | |@LB@5'-UCG...CGCCU CCA CUA AUCC C C UG CGCAC...CCC-3'@LB@ GGAGUCC UGCG UCUC UCAGC UGCUGGC G CUCGC@LB@ :|||||| |||| |||| ||||| |:|:||| | |||||@LB@ UCUCAGG ACGC AGAG AGUCG AUGGCCG C GAGCG@LB@3'-UUU...AGACU CUG ACCC A A UA CUGGU...GUU-5'@LB@ | |@LB@ 88 43@LB@@LB@@LB@Energy -16.83 kcal/mol@LB@Hybridization Energy -49.5275 kcal/mol@LB@Unfolding Energy - mRNA 13.8321 kcal/mol@LB@Unfolding Energy - sRNA 18.8647 kcal/mol@LB@@LB@Position - mRNA 192 -- 238@LB@Position - sRNA 44 -- 87@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 81 -- 87@LB@ |
120 |
0.002089 |
0.07999 |
pa3670 |
N/A |
-15.68 |
0.006401 |
170 -- 246 |
44 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169________________________________________________________________________________________247\n_____________|__________________________________________________________________________________________|\n5'-GCU...CGGUC________AGAA____GA___________________________GAAAC_____UU_______U___GCCGG____UU_______G___UGGCG...GGC-3'\n______________GACC_UGA____AGCC__AUGAGGGG__________GAGU_CGAU_____GCGUG__GUC_CUC_GGC_____GCUG__GCUGAUC_CGC\n______________:|||_|||____||||__||||||:|__________||||_|||:_____|||||__|||_|||_:||_____:|:|__|||||||_|||\n______________UUGG_ACU____UCGG__UACUCCUC__________CUCA_GCUG_____CGCAC__CAG_GAG_UCG_____UGGC__CGACUAG_GCG\n3'-UUU...AGUUU____C___AA______AC________UAUUAGACUU____G____A_________C____A_______AA________________A___CUGGU...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________121________________________________________________________________________________________43\n |
236 -- 242 |
48 -- 54 |
-64.9835 kcal/mol |
25.9985 kcal/mol |
23.3102 kcal/mol |
169 247@LB@ | |@LB@5'-GCU...CGGUC AGAA GA GAAAC UU U GCCGG UU G UGGCG...GGC-3'@LB@ GACC UGA AGCC AUGAGGGG GAGU CGAU GCGUG GUC CUC GGC GCUG GCUGAUC CGC@LB@ :||| ||| |||| ||||||:| |||| |||: ||||| ||| ||| :|| :|:| ||||||| |||@LB@ UUGG ACU UCGG UACUCCUC CUCA GCUG CGCAC CAG GAG UCG UGGC CGACUAG GCG@LB@3'-UUU...AGUUU C AA AC UAUUAGACUU G A C A AA A CUGGU...GUU-5'@LB@ | |@LB@ 121 43@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -64.9835 kcal/mol@LB@Unfolding Energy - mRNA 25.9985 kcal/mol@LB@Unfolding Energy - sRNA 23.3102 kcal/mol@LB@@LB@Position - mRNA 170 -- 246@LB@Position - sRNA 44 -- 120@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 48 -- 54@LB@ |
58 |
0.0005047 |
0.0395 |
pa4066 |
N/A |
-14.62 |
0.013175 |
166 -- 238 |
44 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________165______________________________________________________________________________________239\n_____________|________________________________________________________________________________________|\n5'-AUC...AUGGC____C___CC_________CCC_______U__C__________AU______CUCCC__ACC_______C___________________CCUGC...UGA-3'\n______________CUGU_GAU__GCCU_AUGA___GGAGAUA_UC________CCG__GCUGCG_____UG___GUC_CUC____UGCUGGCU___UUCGC\n______________|:||_|||__||||_||||___|||||||_||________|||__:|||||_____||___|||_|||____|:|:||||___:||||\n______________GGCA_CUA__CGGA_UACU___CCUCUAU_AG________GGC__UGACGC_____AC___CAG_GAG____AUGGCCGA___GAGCG\n3'-UUU...UUUUU________AU____C______________U__ACUUCUCA__________________C_____A___UCGA________CUA_____CUGGU...GUU-5'\n_____________|________________________________________________________________________________________|\n_____________119______________________________________________________________________________________43\n |
227 -- 233 |
52 -- 58 |
-54.201 kcal/mol |
16.2747 kcal/mol |
23.3102 kcal/mol |
165 239@LB@ | |@LB@5'-AUC...AUGGC C CC CCC U C AU CUCCC ACC C CCUGC...UGA-3'@LB@ CUGU GAU GCCU AUGA GGAGAUA UC CCG GCUGCG UG GUC CUC UGCUGGCU UUCGC@LB@ |:|| ||| |||| |||| ||||||| || ||| :||||| || ||| ||| |:|:|||| :||||@LB@ GGCA CUA CGGA UACU CCUCUAU AG GGC UGACGC AC CAG GAG AUGGCCGA GAGCG@LB@3'-UUU...UUUUU AU C U ACUUCUCA C A UCGA CUA CUGGU...GUU-5'@LB@ | |@LB@ 119 43@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -54.201 kcal/mol@LB@Unfolding Energy - mRNA 16.2747 kcal/mol@LB@Unfolding Energy - sRNA 23.3102 kcal/mol@LB@@LB@Position - mRNA 166 -- 238@LB@Position - sRNA 44 -- 118@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 52 -- 58@LB@ |