129 |
0.01414 |
0.3575 |
b3579 |
yiaO |
-11.03 |
0.174508 |
249 -- 273 |
50 -- 76 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________248_________________________274\n_____________|___________________________|\n5'-ACU...CGUCC____________C__UA__________UUGUU...AAA-3'\n______________UGGUUUUAUAUU_AU__UUAGUCGUAU\n______________||:|||||:|::_||__|:||||::|:\n______________ACUAAAAUGUGG_UA__AGUCAGUGUG\n3'-UUU...CGCCC____________U__UG__________UACUA...UAG-5'\n_____________|___________________________|\n_____________77__________________________49\n |
132 -- 138 |
168 -- 174 |
-19.0823 kcal/mol |
5.4875 kcal/mol |
5.03533 kcal/mol |
248 274@LB@ | |@LB@5'-ACU...CGUCC C UA UUGUU...AAA-3'@LB@ UGGUUUUAUAUU AU UUAGUCGUAU@LB@ ||:|||||:|:: || |:||||::|:@LB@ ACUAAAAUGUGG UA AGUCAGUGUG@LB@3'-UUU...CGCCC U UG UACUA...UAG-5'@LB@ | |@LB@ 77 49@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -19.0823 kcal/mol@LB@Unfolding Energy - mRNA 5.4875 kcal/mol@LB@Unfolding Energy - sRNA 5.03533 kcal/mol@LB@@LB@Position - mRNA 249 -- 273@LB@Position - sRNA 50 -- 76@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 168 -- 174@LB@ |
28 |
0.002284 |
0.2633 |
b1114 |
mfd |
-18.81 |
0.004608 |
253 -- 297 |
50 -- 95 |
transcription-repair coupling factor |
|
_____________252______________298\n_____________|________________|\n5'-UUC...GCGUC___U____________CGGCG...AAA-3'\n______________UGC_GGGCGAGUUAAC\n______________|||_:|||:|||:|||\n______________ACG_UCCGUUCAGUUG\n3'-UUU...GUACU________________AAAGU...UAG-5'\n_____________|________________|\n_____________96_______________49\n |
262 -- 268 |
149 -- 155 |
-20.6961 kcal/mol |
4.60584 kcal/mol |
7.12854 kcal/mol |
252 298@LB@ | |@LB@5'-UUC...GCGUC U CGGCG...AAA-3'@LB@ UGC GGGCGAGUUAAC@LB@ ||| :|||:|||:|||@LB@ ACG UCCGUUCAGUUG@LB@3'-UUU...GUACU AAAGU...UAG-5'@LB@ | |@LB@ 96 49@LB@@LB@@LB@Energy -18.81 kcal/mol@LB@Hybridization Energy -20.6961 kcal/mol@LB@Unfolding Energy - mRNA 4.60584 kcal/mol@LB@Unfolding Energy - sRNA 7.12854 kcal/mol@LB@@LB@Position - mRNA 253 -- 297@LB@Position - sRNA 50 -- 95@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 149 -- 155@LB@ |
181 |
0.0209 |
0.3833 |
b2233 |
yfaL |
-9.66 |
0.317681 |
275 -- 285 |
50 -- 60 |
adhesin |
|
_____________274______________286\n_____________|________________|\n5'-UAU...UCUCU___AA__G________CGGUC...CAU-3'\n______________GCU__CG_UGUCGCGG\n______________:||__||_||||||||\n______________UGA__GC_ACAGCGCC\n3'-UUU...CGUGU___A___G________AUUUU...UAG-5'\n_____________|________________|\n_____________61_______________49\n |
279 -- 285 |
50 -- 56 |
-20.2435 kcal/mol |
4.65708 kcal/mol |
6.1451 kcal/mol |
274 286@LB@ | |@LB@5'-UAU...UCUCU AA G CGGUC...CAU-3'@LB@ GCU CG UGUCGCGG@LB@ :|| || ||||||||@LB@ UGA GC ACAGCGCC@LB@3'-UUU...CGUGU A G AUUUU...UAG-5'@LB@ | |@LB@ 61 49@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -20.2435 kcal/mol@LB@Unfolding Energy - mRNA 4.65708 kcal/mol@LB@Unfolding Energy - sRNA 6.1451 kcal/mol@LB@@LB@Position - mRNA 275 -- 285@LB@Position - sRNA 50 -- 60@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 50 -- 56@LB@ |
4 |
0.0001068 |
0.08442 |
b2069 |
yegD |
-18.64 |
0.004982 |
22 -- 145 |
51 -- 187 |
Hsp70 chaperone family protein |
|
_____________21_________________146\n_____________|__________________|\n5'-CAC...ACAUC__________A_______CGCUU...UGC-3'\n______________GCAUCUCCUU__UUCAUC\n______________|||:|:||||__||||||\n______________CGUGGGGGAA__AAGUAG\n3'-UUU...UACCC__________CG______-5'\n_____________|_________________|\n_____________188_______________51\n |
72 -- 78 |
9 -- 15 |
-21.4418 kcal/mol |
1.05479 kcal/mol |
7.2533 kcal/mol |
21 146@LB@ | |@LB@5'-CAC...ACAUC A CGCUU...UGC-3'@LB@ GCAUCUCCUU UUCAUC@LB@ |||:|:|||| ||||||@LB@ CGUGGGGGAA AAGUAG@LB@3'-UUU...UACCC CG -5'@LB@ | |@LB@ 188 51@LB@@LB@@LB@Energy -18.64 kcal/mol@LB@Hybridization Energy -21.4418 kcal/mol@LB@Unfolding Energy - mRNA 1.05479 kcal/mol@LB@Unfolding Energy - sRNA 7.2533 kcal/mol@LB@@LB@Position - mRNA 22 -- 145@LB@Position - sRNA 51 -- 187@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 9 -- 15@LB@ |
16 |
0.0008966 |
0.1886 |
b0807 |
rlmF |
-16.29 |
0.014793 |
117 -- 160 |
51 -- 97 |
23S rRNA m(6)A1618 methyltransferase SAM-dependent |
|
_____________116_____________________________________________161\n_____________|_______________________________________________|\n5'-AUU...UUAAG___U_____AA______A_______________U__A_C________UUAUG...UCC-3'\n______________GUU_UGGGG____UGAU_AACGCAGCCAG_AUA_UU_C_CUGUCGCG\n______________|||_||||:____|:|:_||||||:||||_|:|_:|_|_||||||||\n______________CAA_ACCCU____AUUG_UUGCGUUGGUC_UGU_GA_G_GACAGCGC\n3'-UUU...AUUAG___C_____GCGA____G___________G___U__A_C________CAUUU...UAG-5'\n_____________|_______________________________________________|\n_____________98______________________________________________50\n |
154 -- 160 |
51 -- 57 |
-44.7843 kcal/mol |
10.0752 kcal/mol |
25.3667 kcal/mol |
116 161@LB@ | |@LB@5'-AUU...UUAAG U AA A U A C UUAUG...UCC-3'@LB@ GUU UGGGG UGAU AACGCAGCCAG AUA UU C CUGUCGCG@LB@ ||| ||||: |:|: ||||||:|||| |:| :| | ||||||||@LB@ CAA ACCCU AUUG UUGCGUUGGUC UGU GA G GACAGCGC@LB@3'-UUU...AUUAG C GCGA G G U A C CAUUU...UAG-5'@LB@ | |@LB@ 98 50@LB@@LB@@LB@Energy -16.29 kcal/mol@LB@Hybridization Energy -44.7843 kcal/mol@LB@Unfolding Energy - mRNA 10.0752 kcal/mol@LB@Unfolding Energy - sRNA 25.3667 kcal/mol@LB@@LB@Position - mRNA 117 -- 160@LB@Position - sRNA 51 -- 97@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 51 -- 57@LB@ |
69 |
0.006739 |
0.3286 |
b2265 |
menF |
-9.03 |
0.410924 |
65 -- 108 |
52 -- 101 |
isochorismate synthase 2 |
|
_____________64__________109\n_____________|___________|\n5'-ACU...CGGGU___________CUUUC...CUC-3'\n______________UAUCGAUAUUC\n______________:|:|:|||:||\n______________GUGGUUAUGAG\n3'-UUU...AAAAU___________UCAGU...UAG-5'\n_____________|___________|\n_____________102_________51\n |
285 -- 291 |
176 -- 182 |
-9.38108 kcal/mol |
0.14396 kcal/mol |
3.38772 kcal/mol |
64 109@LB@ | |@LB@5'-ACU...CGGGU CUUUC...CUC-3'@LB@ UAUCGAUAUUC@LB@ :|:|:|||:||@LB@ GUGGUUAUGAG@LB@3'-UUU...AAAAU UCAGU...UAG-5'@LB@ | |@LB@ 102 51@LB@@LB@@LB@Energy -9.03 kcal/mol@LB@Hybridization Energy -9.38108 kcal/mol@LB@Unfolding Energy - mRNA 0.14396 kcal/mol@LB@Unfolding Energy - sRNA 3.38772 kcal/mol@LB@@LB@Position - mRNA 65 -- 108@LB@Position - sRNA 52 -- 101@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 176 -- 182@LB@ |
182 |
0.02094 |
0.3833 |
b0248 |
yafX |
-12.67 |
0.081205 |
189 -- 235 |
52 -- 92 |
CP4-6 prophage; uncharacterized protein |
b2643 |
_____________188______________________236\n_____________|________________________|\n5'-CCG...ACACA___G_________C____ACC___UAACC...GGC-3'\n______________GAC_CAGCACGAC_UCGC___CGC\n______________:||_||||||:||_||||___|||\n______________UUG_GUCGUGUUG_AGCG___GCG\n3'-UUU...UUGCG_____________A____ACA___CCAUU...UAG-5'\n_____________|________________________|\n_____________93_______________________51\n |
218 -- 224 |
63 -- 69 |
-27.2596 kcal/mol |
3.0161 kcal/mol |
15.5954 kcal/mol |
188 236@LB@ | |@LB@5'-CCG...ACACA G C ACC UAACC...GGC-3'@LB@ GAC CAGCACGAC UCGC CGC@LB@ :|| ||||||:|| |||| |||@LB@ UUG GUCGUGUUG AGCG GCG@LB@3'-UUU...UUGCG A ACA CCAUU...UAG-5'@LB@ | |@LB@ 93 51@LB@@LB@@LB@Energy -12.67 kcal/mol@LB@Hybridization Energy -27.2596 kcal/mol@LB@Unfolding Energy - mRNA 3.0161 kcal/mol@LB@Unfolding Energy - sRNA 15.5954 kcal/mol@LB@@LB@Position - mRNA 189 -- 235@LB@Position - sRNA 52 -- 92@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 63 -- 69@LB@ |
88 |
0.009956 |
0.3575 |
b2672 |
ygaM |
-12.38 |
0.093122 |
193 -- 231 |
56 -- 92 |
putative membrane-anchored DUF883 family ribosome-binding protein |
|
_____________192______232\n_____________|________|\n5'-AAC...UGAAC________AGAAA...AGU-3'\n______________CUCAGUUA\n______________||||||:|\n______________GAGUCAGU\n3'-UUU...GUUAU________GUGUA...UAG-5'\n_____________|________|\n_____________93_______55\n |
142 -- 148 |
171 -- 177 |
-10.1878 kcal/mol |
1.87036 kcal/mol |
0.207782 kcal/mol |
192 232@LB@ | |@LB@5'-AAC...UGAAC AGAAA...AGU-3'@LB@ CUCAGUUA@LB@ ||||||:|@LB@ GAGUCAGU@LB@3'-UUU...GUUAU GUGUA...UAG-5'@LB@ | |@LB@ 93 55@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -10.1878 kcal/mol@LB@Unfolding Energy - mRNA 1.87036 kcal/mol@LB@Unfolding Energy - sRNA 0.207782 kcal/mol@LB@@LB@Position - mRNA 193 -- 231@LB@Position - sRNA 56 -- 92@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 171 -- 177@LB@ |
104 |
0.01113 |
0.3575 |
b2108 |
yehA |
-14.54 |
0.033608 |
284 -- 300 |
56 -- 72 |
putative fimbrial-like adhesin protein |
|
_____________283_____________300\n_____________|_______________|\n5'-GUU...CUGUU___________G____-3'\n______________CAGCACAACUU_GUUG\n______________|||||||||||_|:||\n______________GUCGUGUUGAA_CGAC\n3'-UUU...CGUUG___________G____AGCGC...UAG-5'\n_____________|________________|\n_____________73_______________55\n |
289 -- 295 |
61 -- 67 |
-24.1215 kcal/mol |
2.36332 kcal/mol |
11.1531 kcal/mol |
283 300@LB@ | |@LB@5'-GUU...CUGUU G -3'@LB@ CAGCACAACUU GUUG@LB@ ||||||||||| |:||@LB@ GUCGUGUUGAA CGAC@LB@3'-UUU...CGUUG G AGCGC...UAG-5'@LB@ | |@LB@ 73 55@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -24.1215 kcal/mol@LB@Unfolding Energy - mRNA 2.36332 kcal/mol@LB@Unfolding Energy - sRNA 11.1531 kcal/mol@LB@@LB@Position - mRNA 284 -- 300@LB@Position - sRNA 56 -- 72@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 61 -- 67@LB@ |
123 |
0.01344 |
0.3575 |
b2615 |
nadK |
-10.03 |
0.271821 |
99 -- 122 |
57 -- 77 |
NAD kinase |
|
_____________98____________123\n_____________|_____________|\n5'-CUC...CCCAC________AC___ACUGA...AAG-3'\n______________GGCACCCC__UGC\n______________||||||||__|||\n______________CCGUGGGG__ACG\n3'-UUU...GUACC________GA___AAGUAG-5'\n_____________|_____________|\n_____________78____________56\n |
245 -- 251 |
12 -- 18 |
-21.986 kcal/mol |
5.26387 kcal/mol |
8.16826 kcal/mol |
98 123@LB@ | |@LB@5'-CUC...CCCAC AC ACUGA...AAG-3'@LB@ GGCACCCC UGC@LB@ |||||||| |||@LB@ CCGUGGGG ACG@LB@3'-UUU...GUACC GA AAGUAG-5'@LB@ | |@LB@ 78 56@LB@@LB@@LB@Energy -10.03 kcal/mol@LB@Hybridization Energy -21.986 kcal/mol@LB@Unfolding Energy - mRNA 5.26387 kcal/mol@LB@Unfolding Energy - sRNA 8.16826 kcal/mol@LB@@LB@Position - mRNA 99 -- 122@LB@Position - sRNA 57 -- 77@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 12 -- 18@LB@ |