47 |
0.002119 |
0.1452 |
b0694 |
kdpE |
-6.96 |
0.113004 |
177 -- 189 |
26 -- 38 |
response regulator in two-component regulatory system with KdpD |
|
_____________176___________190\n_____________|_____________|\n5'-ACG...CCUGA_____________CAUGA...CGC-3'\n______________ACUUGAAGAAUUU\n______________||||:||:||||:\n______________UGAAUUUUUUAAG\n3'-UUU...CUUCG_____________CAAUG...CAA-5'\n_____________|_____________|\n_____________39____________25\n |
179 -- 185 |
30 -- 36 |
-10.6038 kcal/mol |
2.21135 kcal/mol |
1.43364 kcal/mol |
176 190@LB@ | |@LB@5'-ACG...CCUGA CAUGA...CGC-3'@LB@ ACUUGAAGAAUUU@LB@ ||||:||:||||:@LB@ UGAAUUUUUUAAG@LB@3'-UUU...CUUCG CAAUG...CAA-5'@LB@ | |@LB@ 39 25@LB@@LB@@LB@Energy -6.96 kcal/mol@LB@Hybridization Energy -10.6038 kcal/mol@LB@Unfolding Energy - mRNA 2.21135 kcal/mol@LB@Unfolding Energy - sRNA 1.43364 kcal/mol@LB@@LB@Position - mRNA 177 -- 189@LB@Position - sRNA 26 -- 38@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 30 -- 36@LB@ |
190 |
0.02239 |
0.3796 |
b0724 |
sdhB |
-6.89 |
0.117799 |
143 -- 176 |
24 -- 60 |
succinate dehydrogenase FeS subunit |
|
_____________142____________________________________177\n_____________|______________________________________|\n5'-UUU...GAACC_________GCCC____UUCC____C____________ACUUA...UGA-3'\n______________GAAAC_UGC____GGCA_____CGC___GAAGAUUCGU\n______________|||||_|||____:|||_____|:|___:||:||||||\n______________CUUUG_ACG____UCGU_____GUG___UUUUUAAGCA\n3'-UUU...CCCUA_____A___AAU_____UCUUC___AAU__________AUGUG...CAA-5'\n_____________|______________________________________|\n_____________61_____________________________________23\n |
170 -- 176 |
24 -- 30 |
-22.9017 kcal/mol |
9.73835 kcal/mol |
6.27609 kcal/mol |
142 177@LB@ | |@LB@5'-UUU...GAACC GCCC UUCC C ACUUA...UGA-3'@LB@ GAAAC UGC GGCA CGC GAAGAUUCGU@LB@ ||||| ||| :||| |:| :||:||||||@LB@ CUUUG ACG UCGU GUG UUUUUAAGCA@LB@3'-UUU...CCCUA A AAU UCUUC AAU AUGUG...CAA-5'@LB@ | |@LB@ 61 23@LB@@LB@@LB@Energy -6.89 kcal/mol@LB@Hybridization Energy -22.9017 kcal/mol@LB@Unfolding Energy - mRNA 9.73835 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 143 -- 176@LB@Position - sRNA 24 -- 60@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 24 -- 30@LB@ |
156 |
0.01673 |
0.3455 |
b0740 |
tolB |
-6.75 |
0.127692 |
202 -- 229 |
33 -- 61 |
periplasmic protein |
|
_____________201____________________________230\n_____________|______________________________|\n5'-UCC...UAUGA______AG__A_________U_________UUUUC...CCG-3'\n______________UGAAGC__GC_UUA__CGAG_AGCAUUUGG\n______________||||:|__||_|||__|:||_||||:||::\n______________ACUUUG__CG_AAU__GUUC_UCGUGAAUU\n3'-UUU...GCCCU______AA______UC____U_________UUUUA...CAA-5'\n_____________|______________________________|\n_____________62_____________________________32\n |
222 -- 228 |
34 -- 40 |
-20.0945 kcal/mol |
5.97693 kcal/mol |
7.37029 kcal/mol |
201 230@LB@ | |@LB@5'-UCC...UAUGA AG A U UUUUC...CCG-3'@LB@ UGAAGC GC UUA CGAG AGCAUUUGG@LB@ ||||:| || ||| |:|| ||||:||::@LB@ ACUUUG CG AAU GUUC UCGUGAAUU@LB@3'-UUU...GCCCU AA UC U UUUUA...CAA-5'@LB@ | |@LB@ 62 32@LB@@LB@@LB@Energy -6.75 kcal/mol@LB@Hybridization Energy -20.0945 kcal/mol@LB@Unfolding Energy - mRNA 5.97693 kcal/mol@LB@Unfolding Energy - sRNA 7.37029 kcal/mol@LB@@LB@Position - mRNA 202 -- 229@LB@Position - sRNA 33 -- 61@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 34 -- 40@LB@ |
141 |
0.01363 |
0.3114 |
b0767 |
pgl |
-6.62 |
0.137481 |
178 -- 199 |
36 -- 55 |
6-phosphogluconolactonase |
|
_____________177____________________200\n_____________|______________________|\n5'-UCA...GUCAG_____A__U__A__________CAUGA...AUG-3'\n______________UUGCU_AA_GC_AAGGAGCAUU\n______________|||||_||_||_|||:||||:|\n______________AACGA_UU_CG_UUCUUCGUGA\n3'-UUU...CUUUG_____A________________AUUUU...CAA-5'\n_____________|______________________|\n_____________56_____________________35\n |
193 -- 199 |
36 -- 42 |
-19.0667 kcal/mol |
6.27112 kcal/mol |
6.17795 kcal/mol |
177 200@LB@ | |@LB@5'-UCA...GUCAG A U A CAUGA...AUG-3'@LB@ UUGCU AA GC AAGGAGCAUU@LB@ ||||| || || |||:||||:|@LB@ AACGA UU CG UUCUUCGUGA@LB@3'-UUU...CUUUG A AUUUU...CAA-5'@LB@ | |@LB@ 56 35@LB@@LB@@LB@Energy -6.62 kcal/mol@LB@Hybridization Energy -19.0667 kcal/mol@LB@Unfolding Energy - mRNA 6.27112 kcal/mol@LB@Unfolding Energy - sRNA 6.17795 kcal/mol@LB@@LB@Position - mRNA 178 -- 199@LB@Position - sRNA 36 -- 55@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 36 -- 42@LB@ |
7 |
4.438e-05 |
0.02042 |
b0794 |
ybhF |
-10.77 |
0.009494 |
150 -- 165 |
11 -- 26 |
putative ABC transporter ATPase |
|
_____________149______________166\n_____________|________________|\n5'-UAC...UGAUG________________GCCAG...GUU-3'\n______________CGUUACGCCAGGGAAU\n______________||||||:|||||:|||\n______________GCAAUGUGGUCCUUUA\n3'-UUU...UUUAA________________GACUA...CAA-5'\n_____________|________________|\n_____________27_______________10\n |
157 -- 163 |
13 -- 19 |
-25.1629 kcal/mol |
6.0475 kcal/mol |
8.34814 kcal/mol |
149 166@LB@ | |@LB@5'-UAC...UGAUG GCCAG...GUU-3'@LB@ CGUUACGCCAGGGAAU@LB@ ||||||:|||||:|||@LB@ GCAAUGUGGUCCUUUA@LB@3'-UUU...UUUAA GACUA...CAA-5'@LB@ | |@LB@ 27 10@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -25.1629 kcal/mol@LB@Unfolding Energy - mRNA 6.0475 kcal/mol@LB@Unfolding Energy - sRNA 8.34814 kcal/mol@LB@@LB@Position - mRNA 150 -- 165@LB@Position - sRNA 11 -- 26@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 13 -- 19@LB@ |
19 |
0.0004926 |
0.08107 |
b0820 |
ybiT |
-10.62 |
0.010514 |
37 -- 84 |
2 -- 44 |
ABC-F family putative regulatory ATPase |
|
_____________36________________________________________________85\n_____________|_________________________________________________|\n5'-CCU...GUAUU________A___U_______A__CCA__U_A___U______A_______ACGAA...UUG-3'\n______________GGAAGCGC_UUA__AAGUUC_UU___GC_C_CAG_GAAAUC_GAUGUGU\n______________:|||||:|_|||__||:|||_||___:|_|_|||_||||||_|||||||\n______________UCUUCGUG_AAU__UUUAAG_AA___UG_G_GUC_CUUUAG_CUACACA\n3'-UUU...UUCGU____________UU______C_______U____________A_______A-5'\n_____________|_________________________________________________|\n_____________45________________________________________________1\n |
38 -- 44 |
37 -- 43 |
-34.6599 kcal/mol |
11.843 kcal/mol |
12.1934 kcal/mol |
36 85@LB@ | |@LB@5'-CCU...GUAUU A U A CCA U A U A ACGAA...UUG-3'@LB@ GGAAGCGC UUA AAGUUC UU GC C CAG GAAAUC GAUGUGU@LB@ :|||||:| ||| ||:||| || :| | ||| |||||| |||||||@LB@ UCUUCGUG AAU UUUAAG AA UG G GUC CUUUAG CUACACA@LB@3'-UUU...UUCGU UU C U A A-5'@LB@ | |@LB@ 45 1@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -34.6599 kcal/mol@LB@Unfolding Energy - mRNA 11.843 kcal/mol@LB@Unfolding Energy - sRNA 12.1934 kcal/mol@LB@@LB@Position - mRNA 37 -- 84@LB@Position - sRNA 2 -- 44@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 37 -- 43@LB@ |
34 |
0.001265 |
0.1198 |
b0826 |
moeB |
-10.82 |
0.009172 |
276 -- 295 |
26 -- 46 |
molybdopterin synthase sulfurylase |
|
_____________275___________________296\n_____________|_____________________|\n5'-CUU...ACGGC_____________________UCGCG-3'\n______________CAGGAGGCGC_UGAAAGAUUC\n______________||:||:||:|_|:|||:||||\n______________GUUCUUCGUG_AUUUUUUAAG\n3'-UUU...AAUUC__________A__________CAAUG...CAA-5'\n_____________|_____________________|\n_____________47____________________25\n |
289 -- 295 |
26 -- 32 |
-23.0973 kcal/mol |
6.15128 kcal/mol |
6.13041 kcal/mol |
275 296@LB@ | |@LB@5'-CUU...ACGGC UCGCG-3'@LB@ CAGGAGGCGC UGAAAGAUUC@LB@ ||:||:||:| |:|||:||||@LB@ GUUCUUCGUG AUUUUUUAAG@LB@3'-UUU...AAUUC A CAAUG...CAA-5'@LB@ | |@LB@ 47 25@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -23.0973 kcal/mol@LB@Unfolding Energy - mRNA 6.15128 kcal/mol@LB@Unfolding Energy - sRNA 6.13041 kcal/mol@LB@@LB@Position - mRNA 276 -- 295@LB@Position - sRNA 26 -- 46@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 26 -- 32@LB@ |
169 |
0.01902 |
0.3625 |
b0858 |
ybjO |
-5.59 |
0.239654 |
140 -- 156 |
25 -- 43 |
DUF2593 family inner membrane protein |
|
_____________139__________________157\n_____________|____________________|\n5'-AUG...UGGCU____A_______________CCAAC...UUA-3'\n______________GAAG_CACU___AAAAUUUG\n______________||||_||||___||||||:|\n______________CUUC_GUGA___UUUUAAGC\n3'-UUU...UCGUU_________AUU________AAUGU...CAA-5'\n_____________|____________________|\n_____________44___________________24\n |
150 -- 156 |
25 -- 31 |
-11.6219 kcal/mol |
2.26879 kcal/mol |
3.76226 kcal/mol |
139 157@LB@ | |@LB@5'-AUG...UGGCU A CCAAC...UUA-3'@LB@ GAAG CACU AAAAUUUG@LB@ |||| |||| ||||||:|@LB@ CUUC GUGA UUUUAAGC@LB@3'-UUU...UCGUU AUU AAUGU...CAA-5'@LB@ | |@LB@ 44 24@LB@@LB@@LB@Energy -5.59 kcal/mol@LB@Hybridization Energy -11.6219 kcal/mol@LB@Unfolding Energy - mRNA 2.26879 kcal/mol@LB@Unfolding Energy - sRNA 3.76226 kcal/mol@LB@@LB@Position - mRNA 140 -- 156@LB@Position - sRNA 25 -- 43@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 25 -- 31@LB@ |
66 |
0.003432 |
0.1645 |
b0882 |
clpA |
-7.45 |
0.084488 |
282 -- 290 |
34 -- 42 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________281_______291\n_____________|_________|\n5'-UUU...CCGUC_________UUACU...CGC-3'\n______________GAGCACUUG\n______________:|||||||:\n______________UUCGUGAAU\n3'-UUU...CGUUC_________UUUUU...CAA-5'\n_____________|_________|\n_____________43________33\n |
284 -- 290 |
34 -- 40 |
-10.5586 kcal/mol |
1.49281 kcal/mol |
1.61613 kcal/mol |
281 291@LB@ | |@LB@5'-UUU...CCGUC UUACU...CGC-3'@LB@ GAGCACUUG@LB@ :|||||||:@LB@ UUCGUGAAU@LB@3'-UUU...CGUUC UUUUU...CAA-5'@LB@ | |@LB@ 43 33@LB@@LB@@LB@Energy -7.45 kcal/mol@LB@Hybridization Energy -10.5586 kcal/mol@LB@Unfolding Energy - mRNA 1.49281 kcal/mol@LB@Unfolding Energy - sRNA 1.61613 kcal/mol@LB@@LB@Position - mRNA 282 -- 290@LB@Position - sRNA 34 -- 42@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 34 -- 40@LB@ |
182 |
0.02157 |
0.3768 |
b0887 |
cydD |
-7.84 |
0.066788 |
30 -- 38 |
33 -- 41 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________29________39\n_____________|_________|\n5'-AUU...AUGGC_________UGCGG...UGA-3'\n______________AGCACUUGA\n______________|||||||:|\n______________UCGUGAAUU\n3'-UUU...GUUCU_________UUUUA...CAA-5'\n_____________|_________|\n_____________42________32\n |
32 -- 38 |
33 -- 39 |
-10.6359 kcal/mol |
1.18174 kcal/mol |
1.6188 kcal/mol |
29 39@LB@ | |@LB@5'-AUU...AUGGC UGCGG...UGA-3'@LB@ AGCACUUGA@LB@ |||||||:|@LB@ UCGUGAAUU@LB@3'-UUU...GUUCU UUUUA...CAA-5'@LB@ | |@LB@ 42 32@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -10.6359 kcal/mol@LB@Unfolding Energy - mRNA 1.18174 kcal/mol@LB@Unfolding Energy - sRNA 1.6188 kcal/mol@LB@@LB@Position - mRNA 30 -- 38@LB@Position - sRNA 33 -- 41@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 33 -- 39@LB@ |