| 158 |
0.007987 |
0.1694 |
b0756 |
galM |
-12.34 |
0.055034 |
97 -- 122 |
25 -- 48 |
aldose 1-epimerase; type-1 mutarotase; galactose mutarotase |
|
_____________96_________________________123\n_____________|__________________________|\n5'-CUG...CGGAA___C____G____CC_______A___UGUCG...GGG-3'\n______________GAG_UGGU_CCUG__GUACAGC_AGC\n______________|||_||||_||||__|||||||_|||\n______________CUC_ACCA_GGAC__CAUGUCG_UCG\n3'-UUU...GAUUC___C____A_____________A___UAAAA...UCG-5'\n_____________|__________________________|\n_____________49_________________________24\n |
112 -- 118 |
29 -- 35 |
-29.4823 kcal/mol |
12.5844 kcal/mol |
4.55759 kcal/mol |
96 123@LB@ | |@LB@5'-CUG...CGGAA C G CC A UGUCG...GGG-3'@LB@ GAG UGGU CCUG GUACAGC AGC@LB@ ||| |||| |||| ||||||| |||@LB@ CUC ACCA GGAC CAUGUCG UCG@LB@3'-UUU...GAUUC C A A UAAAA...UCG-5'@LB@ | |@LB@ 49 24@LB@@LB@@LB@Energy -12.34 kcal/mol@LB@Hybridization Energy -29.4823 kcal/mol@LB@Unfolding Energy - mRNA 12.5844 kcal/mol@LB@Unfolding Energy - sRNA 4.55759 kcal/mol@LB@@LB@Position - mRNA 97 -- 122@LB@Position - sRNA 25 -- 48@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 16 |
0.000101 |
0.02121 |
b3428 |
glgP |
-10.27 |
0.148738 |
91 -- 131 |
1 -- 46 |
glycogen phosphorylase |
|
_____________90_____________________________________________132\n_____________|______________________________________________|\n5'-CCA...ACUGU__C_____G__CA___UCA____________CA____GA_______UGGCA...CGG-3'\n______________GG_GGUUU_UG__ACG___GGC____UAUGG___AUG__UUUUAGC\n______________||_||||:_||__||:___:||____|||||___|||__|||:|||\n______________CC_CCAAG_AC__UGU___UCG____AUACC___UAC__AAAGUCG\n3'-UUU...UUCCU__A_____G__CA___CGA___UAAA_____CAA___AA_______-5'\n_____________|_____________________________________________|\n_____________47____________________________________________1\n |
125 -- 131 |
1 -- 7 |
-28.7783 kcal/mol |
13.8975 kcal/mol |
4.60935 kcal/mol |
90 132@LB@ | |@LB@5'-CCA...ACUGU C G CA UCA CA GA UGGCA...CGG-3'@LB@ GG GGUUU UG ACG GGC UAUGG AUG UUUUAGC@LB@ || ||||: || ||: :|| ||||| ||| |||:|||@LB@ CC CCAAG AC UGU UCG AUACC UAC AAAGUCG@LB@3'-UUU...UUCCU A G CA CGA UAAA CAA AA -5'@LB@ | |@LB@ 47 1@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -28.7783 kcal/mol@LB@Unfolding Energy - mRNA 13.8975 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 91 -- 131@LB@Position - sRNA 1 -- 46@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 155 |
0.007835 |
0.1694 |
b2239 |
glpQ |
-10.90 |
0.112133 |
59 -- 106 |
1 -- 45 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________58________________________________________________107\n_____________|_________________________________________________|\n5'-CGG...ACACC____AC_____C__CUG__A_____GC_______UA____A__GG____AGCAU...UCA-3'\n______________GUGG__UUCUU_GG___GG_UGGCG__UUUAUGG___AUG_UU__CGGC\n______________||||__|||:|_||___:|_|:||:__|||||||___|||_||__|:||\n______________CACC__AAGGA_CC___UC_AUCGU__AAAUACC___UAC_AA__GUCG\n3'-UUU...UCCUC______________AUG__G_____A________CAA___A__AA____-5'\n_____________|________________________________________________|\n_____________46_______________________________________________1\n |
86 -- 92 |
16 -- 22 |
-29.5358 kcal/mol |
14.0238 kcal/mol |
4.60935 kcal/mol |
58 107@LB@ | |@LB@5'-CGG...ACACC AC C CUG A GC UA A GG AGCAU...UCA-3'@LB@ GUGG UUCUU GG GG UGGCG UUUAUGG AUG UU CGGC@LB@ |||| |||:| || :| |:||: ||||||| ||| || |:||@LB@ CACC AAGGA CC UC AUCGU AAAUACC UAC AA GUCG@LB@3'-UUU...UCCUC AUG G A CAA A AA -5'@LB@ | |@LB@ 46 1@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -29.5358 kcal/mol@LB@Unfolding Energy - mRNA 14.0238 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 59 -- 106@LB@Position - sRNA 1 -- 45@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 79 |
0.002261 |
0.09621 |
b2556 |
glrK |
-15.72 |
0.006745 |
240 -- 258 |
20 -- 38 |
sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR |
|
_____________239_________________259\n_____________|___________________|\n5'-CUA...GACAA______AU___________UGCUG...CCU-3'\n______________CUGGUA__GCUGGCAUUUU\n______________||||||__|||:|||||||\n______________GACCAU__CGAUCGUAAAA\n3'-UUU...CCAAG______GU___________UACCC...UCG-5'\n_____________|___________________|\n_____________39__________________19\n |
252 -- 258 |
20 -- 26 |
-25.6316 kcal/mol |
5.4283 kcal/mol |
4.48821 kcal/mol |
239 259@LB@ | |@LB@5'-CUA...GACAA AU UGCUG...CCU-3'@LB@ CUGGUA GCUGGCAUUUU@LB@ |||||| |||:|||||||@LB@ GACCAU CGAUCGUAAAA@LB@3'-UUU...CCAAG GU UACCC...UCG-5'@LB@ | |@LB@ 39 19@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -25.6316 kcal/mol@LB@Unfolding Energy - mRNA 5.4283 kcal/mol@LB@Unfolding Energy - sRNA 4.48821 kcal/mol@LB@@LB@Position - mRNA 240 -- 258@LB@Position - sRNA 20 -- 38@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 78 |
0.002256 |
0.09621 |
b0509 |
glxR |
-14.00 |
0.021344 |
191 -- 236 |
14 -- 48 |
tartronate semialdehyde reductase NADH-dependent |
b3882 b3125 |
_____________190______________________________________________237\n_____________|________________________________________________|\n5'-AGG...UAAAA_____UAAUUAUGAAA____GAUUUAU_____UA______________ACACC...CGG-3'\n______________GAGGU___________CUGG_______UGGCU__GGCAU__UAUGGGU\n______________|||||___________||||_______::|||__:||||__|||||||\n______________CUCCA___________GACC_______GUCGA__UCGUA__AUACCCA\n3'-UUU...GAUUC_____CCAAG__________AU_________________AA_______AUACA...UCG-5'\n_____________|________________________________________________|\n_____________49_______________________________________________13\n |
230 -- 236 |
14 -- 20 |
-26.1649 kcal/mol |
7.59311 kcal/mol |
4.57384 kcal/mol |
190 237@LB@ | |@LB@5'-AGG...UAAAA UAAUUAUGAAA GAUUUAU UA ACACC...CGG-3'@LB@ GAGGU CUGG UGGCU GGCAU UAUGGGU@LB@ ||||| |||| ::||| :|||| |||||||@LB@ CUCCA GACC GUCGA UCGUA AUACCCA@LB@3'-UUU...GAUUC CCAAG AU AA AUACA...UCG-5'@LB@ | |@LB@ 49 13@LB@@LB@@LB@Energy -14.00 kcal/mol@LB@Hybridization Energy -26.1649 kcal/mol@LB@Unfolding Energy - mRNA 7.59311 kcal/mol@LB@Unfolding Energy - sRNA 4.57384 kcal/mol@LB@@LB@Position - mRNA 191 -- 236@LB@Position - sRNA 14 -- 48@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 90 |
0.002979 |
0.1113 |
b3328 |
gspG |
-12.13 |
0.061461 |
284 -- 293 |
37 -- 46 |
pseudopilin cryptic general secretion pathway |
|
_____________283________294\n_____________|__________|\n5'-AAA...AGCCU__________AACCUAA-3'\n______________GGUGGUUCCU\n______________||||||||||\n______________CCACCAAGGA\n3'-UUU...UUCCU__________CCAUG...UCG-5'\n_____________|__________|\n_____________47_________36\n |
287 -- 293 |
37 -- 43 |
-18.4741 kcal/mol |
3.21142 kcal/mol |
3.13317 kcal/mol |
283 294@LB@ | |@LB@5'-AAA...AGCCU AACCUAA-3'@LB@ GGUGGUUCCU@LB@ ||||||||||@LB@ CCACCAAGGA@LB@3'-UUU...UUCCU CCAUG...UCG-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -18.4741 kcal/mol@LB@Unfolding Energy - mRNA 3.21142 kcal/mol@LB@Unfolding Energy - sRNA 3.13317 kcal/mol@LB@@LB@Position - mRNA 284 -- 293@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 187 |
0.01074 |
0.1919 |
b2536 |
hcaT |
-7.74 |
0.383266 |
275 -- 291 |
25 -- 41 |
putative 3-phenylpropionic transporter |
|
_____________274_______________292\n_____________|_________________|\n5'-UCG...CUACC_______A___U_____UUAAA...GGA-3'\n______________UUUCUGG_GCG_CUGGC\n______________||:||||_:|:_||:||\n______________AAGGACC_UGU_GAUCG\n3'-UUU...CCACC_______A___C_____UAAAA...UCG-5'\n_____________|_________________|\n_____________42________________24\n |
275 -- 281 |
35 -- 41 |
-17.8602 kcal/mol |
5.56231 kcal/mol |
4.55428 kcal/mol |
274 292@LB@ | |@LB@5'-UCG...CUACC A U UUAAA...GGA-3'@LB@ UUUCUGG GCG CUGGC@LB@ ||:|||| :|: ||:||@LB@ AAGGACC UGU GAUCG@LB@3'-UUU...CCACC A C UAAAA...UCG-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -17.8602 kcal/mol@LB@Unfolding Energy - mRNA 5.56231 kcal/mol@LB@Unfolding Energy - sRNA 4.55428 kcal/mol@LB@@LB@Position - mRNA 275 -- 291@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 98 |
0.003416 |
0.1172 |
b2024 |
hisA |
-13.42 |
0.030138 |
147 -- 168 |
25 -- 49 |
N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase |
|
_____________146_______________________169\n_____________|_________________________|\n5'-CAG...CACCC____C_____________C______GCUAA...CGC-3'\n______________GGAG___GUU_CUGGUGC_GCUGGU\n______________||||___|||_|||||:|_|||:|:\n______________CCUC___CAA_GACCAUG_CGAUCG\n3'-UUU...CGAUU____CAC___G_______U______UAAAA...UCG-5'\n_____________|_________________________|\n_____________50________________________24\n |
155 -- 161 |
32 -- 38 |
-27.4512 kcal/mol |
9.47045 kcal/mol |
4.5577 kcal/mol |
146 169@LB@ | |@LB@5'-CAG...CACCC C C GCUAA...CGC-3'@LB@ GGAG GUU CUGGUGC GCUGGU@LB@ |||| ||| |||||:| |||:|:@LB@ CCUC CAA GACCAUG CGAUCG@LB@3'-UUU...CGAUU CAC G U UAAAA...UCG-5'@LB@ | |@LB@ 50 24@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -27.4512 kcal/mol@LB@Unfolding Energy - mRNA 9.47045 kcal/mol@LB@Unfolding Energy - sRNA 4.5577 kcal/mol@LB@@LB@Position - mRNA 147 -- 168@LB@Position - sRNA 25 -- 49@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 24 |
0.0003458 |
0.04652 |
b2308 |
hisQ |
-16.60 |
0.003436 |
190 -- 219 |
2 -- 36 |
histidine ABC transporter permease |
|
_____________189___________________________________220\n_____________|_____________________________________|\n5'-GAU...CGACA_______GC_____GUUG___________________GUGUU...UUG-3'\n______________GG_ACAG__AGCAU____UAUGGGUU______UUCAG\n______________||_||||__|||||____||||||||______|||||\n______________CC_UGUC__UCGUA____AUACCCAA______AAGUC\n3'-UUU...AAGGA__A____GA_____AA__________UACAAA_____G-5'\n_____________|_____________________________________|\n_____________37____________________________________1\n |
208 -- 214 |
13 -- 19 |
-26.4576 kcal/mol |
8.3674 kcal/mol |
1.49503 kcal/mol |
189 220@LB@ | |@LB@5'-GAU...CGACA GC GUUG GUGUU...UUG-3'@LB@ GG ACAG AGCAU UAUGGGUU UUCAG@LB@ || |||| ||||| |||||||| |||||@LB@ CC UGUC UCGUA AUACCCAA AAGUC@LB@3'-UUU...AAGGA A GA AA UACAAA G-5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -26.4576 kcal/mol@LB@Unfolding Energy - mRNA 8.3674 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 190 -- 219@LB@Position - sRNA 2 -- 36@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 77 |
0.002255 |
0.09621 |
b3052 |
hldE |
-16.16 |
0.004835 |
103 -- 144 |
10 -- 48 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________102___________________________________________145\n_____________|_____________________________________________|\n5'-GCG...CCGCA___C___AA_________GGGCA________GAA_____CUG___GAAGA...CGC-3'\n______________GAG_GUG____CUGGUGC_____AGCUGGCA____GUGG___GUG\n______________|||_|||____|||||:|_____||||:|||____:|||___:||\n______________CUC_CAC____GACCAUG_____UCGAUCGU____UACC___UAC\n3'-UUU...GAUUC_______CAAG____________________AAAA____CAA___AAAAA...UCG-5'\n_____________|_____________________________________________|\n_____________49____________________________________________9\n |
125 -- 131 |
24 -- 30 |
-34.5885 kcal/mol |
13.822 kcal/mol |
4.60637 kcal/mol |
102 145@LB@ | |@LB@5'-GCG...CCGCA C AA GGGCA GAA CUG GAAGA...CGC-3'@LB@ GAG GUG CUGGUGC AGCUGGCA GUGG GUG@LB@ ||| ||| |||||:| ||||:||| :||| :||@LB@ CUC CAC GACCAUG UCGAUCGU UACC UAC@LB@3'-UUU...GAUUC CAAG AAAA CAA AAAAA...UCG-5'@LB@ | |@LB@ 49 9@LB@@LB@@LB@Energy -16.16 kcal/mol@LB@Hybridization Energy -34.5885 kcal/mol@LB@Unfolding Energy - mRNA 13.822 kcal/mol@LB@Unfolding Energy - sRNA 4.60637 kcal/mol@LB@@LB@Position - mRNA 103 -- 144@LB@Position - sRNA 10 -- 48@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 24 -- 30@LB@ |
