41 |
0.002142 |
0.1727 |
b2153 |
folE |
-10.82 |
0.097170 |
217 -- 276 |
53 -- 121 |
GTP cyclohydrolase I |
|
_____________216________________________________________________________________________277\n_____________|__________________________________________________________________________|\n5'-CUG...CAGUA______C__________CAU__AG__UUA_U________G____GA____________________________CGCCC...ACG-3'\n______________AAGAAG_GGCCCUGGUU___GA__CG___G_UGCGCGAG_ACUG____AACACC____________GCUGCGCC\n______________||:||:_|:|||:||:|___||__||___|_|||||||:_||||____||||||____________||||||||\n______________UUUUUU_CUGGGGCCGA___CU__GC___C_ACGCGCUU_UGAC____UUGUGG____________CGACGCGG\n___________3'-______A__________U____G___C___C________A____GCGG______UCCCUUUAGAAC________CAUUU...GUG-5'\n______________|_________________________________________________________________________|\n______________121_______________________________________________________________________52\n |
270 -- 276 |
53 -- 59 |
-62.0592 kcal/mol |
19.5041 kcal/mol |
31.7353 kcal/mol |
216 277@LB@ | |@LB@5'-CUG...CAGUA C CAU AG UUA U G GA CGCCC...ACG-3'@LB@ AAGAAG GGCCCUGGUU GA CG G UGCGCGAG ACUG AACACC GCUGCGCC@LB@ ||:||: |:|||:||:| || || | |||||||: |||| |||||| ||||||||@LB@ UUUUUU CUGGGGCCGA CU GC C ACGCGCUU UGAC UUGUGG CGACGCGG@LB@ 3'- A U G C C A GCGG UCCCUUUAGAAC CAUUU...GUG-5'@LB@ | |@LB@ 121 52@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -62.0592 kcal/mol@LB@Unfolding Energy - mRNA 19.5041 kcal/mol@LB@Unfolding Energy - sRNA 31.7353 kcal/mol@LB@@LB@Position - mRNA 217 -- 276@LB@Position - sRNA 53 -- 121@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 53 -- 59@LB@ |
42 |
0.002147 |
0.1727 |
b0082 |
rsmH |
-13.18 |
0.033634 |
23 -- 49 |
70 -- 94 |
16S rRNA m(4)C1402 methyltransferase SAM-dependent |
|
_____________22__________________________50\n_____________|___________________________|\n5'-UGG...UAAUC____C_________G____AU______CUGAC...GUC-3'\n______________GCGC_AGUACUGCG_CAAC__GCCGGG\n______________||||_|:|||||||_||||__:||:||\n______________CGCG_UUAUGACGC_GUUG__UGGUCC\n3'-UUU...CCCCA____C_________G____________CUUUA...GUG-5'\n_____________|___________________________|\n_____________95__________________________69\n |
30 -- 36 |
81 -- 87 |
-36.7334 kcal/mol |
10.4772 kcal/mol |
13.036 kcal/mol |
22 50@LB@ | |@LB@5'-UGG...UAAUC C G AU CUGAC...GUC-3'@LB@ GCGC AGUACUGCG CAAC GCCGGG@LB@ |||| |:||||||| |||| :||:||@LB@ CGCG UUAUGACGC GUUG UGGUCC@LB@3'-UUU...CCCCA C G CUUUA...GUG-5'@LB@ | |@LB@ 95 69@LB@@LB@@LB@Energy -13.18 kcal/mol@LB@Hybridization Energy -36.7334 kcal/mol@LB@Unfolding Energy - mRNA 10.4772 kcal/mol@LB@Unfolding Energy - sRNA 13.036 kcal/mol@LB@@LB@Position - mRNA 23 -- 49@LB@Position - sRNA 70 -- 94@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 81 -- 87@LB@ |
43 |
0.002187 |
0.1727 |
b2222 |
atoA |
-7.38 |
0.400797 |
260 -- 273 |
68 -- 82 |
acetyl-CoA:acetoacetyl-CoA transferase beta subunit |
|
_____________259_____________274\n_____________|_______________|\n5'-CGC...GACAU_______________UCGGU...AUU-3'\n______________CGUUAAC_UUAGGGA\n______________||::|||_::|||||\n______________GCGGUUG_GGUCCCU\n3'-UUU...AUGAC_______U_______UUAGA...GUG-5'\n_____________|_______________|\n_____________83______________67\n |
267 -- 273 |
68 -- 74 |
-16.5153 kcal/mol |
2.15948 kcal/mol |
6.98098 kcal/mol |
259 274@LB@ | |@LB@5'-CGC...GACAU UCGGU...AUU-3'@LB@ CGUUAAC UUAGGGA@LB@ ||::||| ::|||||@LB@ GCGGUUG GGUCCCU@LB@3'-UUU...AUGAC U UUAGA...GUG-5'@LB@ | |@LB@ 83 67@LB@@LB@@LB@Energy -7.38 kcal/mol@LB@Hybridization Energy -16.5153 kcal/mol@LB@Unfolding Energy - mRNA 2.15948 kcal/mol@LB@Unfolding Energy - sRNA 6.98098 kcal/mol@LB@@LB@Position - mRNA 260 -- 273@LB@Position - sRNA 68 -- 82@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 68 -- 74@LB@ |
44 |
0.002208 |
0.1727 |
b1859 |
znuB |
-7.63 |
0.365449 |
19 -- 38 |
72 -- 88 |
zinc ABC transporter permease |
|
_____________18___________________39\n_____________|____________________|\n5'-AUG...AUGAA__________UGAAU_____CAUUU...AUU-3'\n______________GUGCUGUGCC_____CACCA\n______________:|:|||:|||_____|||||\n______________UAUGACGCGG_____GUGGU\n3'-UUU...GCGCU__________UU________CCCUU...GUG-5'\n_____________|____________________|\n_____________89___________________71\n |
22 -- 28 |
79 -- 85 |
-22.3137 kcal/mol |
7.44481 kcal/mol |
7.24148 kcal/mol |
18 39@LB@ | |@LB@5'-AUG...AUGAA UGAAU CAUUU...AUU-3'@LB@ GUGCUGUGCC CACCA@LB@ :|:|||:||| |||||@LB@ UAUGACGCGG GUGGU@LB@3'-UUU...GCGCU UU CCCUU...GUG-5'@LB@ | |@LB@ 89 71@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -22.3137 kcal/mol@LB@Unfolding Energy - mRNA 7.44481 kcal/mol@LB@Unfolding Energy - sRNA 7.24148 kcal/mol@LB@@LB@Position - mRNA 19 -- 38@LB@Position - sRNA 72 -- 88@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 79 -- 85@LB@ |
45 |
0.002234 |
0.1727 |
b0055 |
djlA |
-13.22 |
0.033048 |
207 -- 250 |
35 -- 76 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________206___________________________________________251\n_____________|_____________________________________________|\n5'-GAC...UGCAG_________AA____A_____GUG_______CCUUAC________CGGCG...UUG-3'\n______________UAUUGGGGA__AAUC_UUGGC___GCCGUGG_______UGAUGGG\n______________:|:::||||__||||_|||||___|||||::_______|||||:|\n______________GUGGUCCCU__UUAG_AACCG___CGGCAUU_______ACUACUC\n3'-UUU...CGGUU_____________________ACG_______UAAUAAU_______AAUGU...GUG-5'\n_____________|_____________________________________________|\n_____________77____________________________________________34\n |
244 -- 250 |
35 -- 41 |
-37.823 kcal/mol |
15.2445 kcal/mol |
9.3594 kcal/mol |
206 251@LB@ | |@LB@5'-GAC...UGCAG AA A GUG CCUUAC CGGCG...UUG-3'@LB@ UAUUGGGGA AAUC UUGGC GCCGUGG UGAUGGG@LB@ :|:::|||| |||| ||||| |||||:: |||||:|@LB@ GUGGUCCCU UUAG AACCG CGGCAUU ACUACUC@LB@3'-UUU...CGGUU ACG UAAUAAU AAUGU...GUG-5'@LB@ | |@LB@ 77 34@LB@@LB@@LB@Energy -13.22 kcal/mol@LB@Hybridization Energy -37.823 kcal/mol@LB@Unfolding Energy - mRNA 15.2445 kcal/mol@LB@Unfolding Energy - sRNA 9.3594 kcal/mol@LB@@LB@Position - mRNA 207 -- 250@LB@Position - sRNA 35 -- 76@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 35 -- 41@LB@ |
46 |
0.002359 |
0.1727 |
b4139 |
aspA |
-15.43 |
0.012067 |
239 -- 273 |
37 -- 76 |
aspartate ammonia-lyase |
|
_____________238_______________________________________274\n_____________|_________________________________________|\n5'-GAU...UUGGG_____________CCA____A____________C_______UUCAC...ACU-3'\n______________UACCAGGGAAGUU___GCUG_UGCC______UA_UAUGGUG\n______________:|||||||||:|:___||||_:|||______||_||||:||\n______________GUGGUCCCUUUAG___CGAC_GCGG______AU_AUACUAC\n3'-UUU...CGGUU_____________AAC_________CAUUUA__A_______UCAAU...GUG-5'\n_____________|_________________________________________|\n_____________77________________________________________36\n |
267 -- 273 |
37 -- 43 |
-35.8845 kcal/mol |
11.095 kcal/mol |
9.35931 kcal/mol |
238 274@LB@ | |@LB@5'-GAU...UUGGG CCA A C UUCAC...ACU-3'@LB@ UACCAGGGAAGUU GCUG UGCC UA UAUGGUG@LB@ :|||||||||:|: |||| :||| || ||||:||@LB@ GUGGUCCCUUUAG CGAC GCGG AU AUACUAC@LB@3'-UUU...CGGUU AAC CAUUUA A UCAAU...GUG-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -15.43 kcal/mol@LB@Hybridization Energy -35.8845 kcal/mol@LB@Unfolding Energy - mRNA 11.095 kcal/mol@LB@Unfolding Energy - sRNA 9.35931 kcal/mol@LB@@LB@Position - mRNA 239 -- 273@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 37 -- 43@LB@ |
47 |
0.002359 |
0.1727 |
b1520 |
yneE |
-16.33 |
0.007995 |
225 -- 237 |
50 -- 62 |
bestrophin family putative inner membrane protein |
|
_____________224___________238\n_____________|_____________|\n5'-CGU...AACAC_____________UUUUU...UCU-3'\n______________UGGCUGCGCCGUA\n______________|||||||||||||\n______________ACCGACGCGGCAU\n3'-UUU...UUAGA_____________UUAAU...GUG-5'\n_____________|_____________|\n_____________63____________49\n |
231 -- 237 |
50 -- 56 |
-27.5123 kcal/mol |
5.30923 kcal/mol |
5.87004 kcal/mol |
224 238@LB@ | |@LB@5'-CGU...AACAC UUUUU...UCU-3'@LB@ UGGCUGCGCCGUA@LB@ |||||||||||||@LB@ ACCGACGCGGCAU@LB@3'-UUU...UUAGA UUAAU...GUG-5'@LB@ | |@LB@ 63 49@LB@@LB@@LB@Energy -16.33 kcal/mol@LB@Hybridization Energy -27.5123 kcal/mol@LB@Unfolding Energy - mRNA 5.30923 kcal/mol@LB@Unfolding Energy - sRNA 5.87004 kcal/mol@LB@@LB@Position - mRNA 225 -- 237@LB@Position - sRNA 50 -- 62@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 50 -- 56@LB@ |
48 |
0.002388 |
0.1727 |
b2198 |
ccmD |
-12.59 |
0.043972 |
250 -- 282 |
36 -- 77 |
cytochrome c biogenesis protein; heme export ABC transporter holo-CcmE release factor |
|
_____________249________________________________________283\n_____________|__________________________________________|\n5'-UGG...CGGUU_____UUUUUU_____________G_________________CCGUU...UGG-3'\n______________ACGCC______GUC_UGGCUG_GC_GUG_______GUGAUGA\n______________||:||______:||_||||||_||_||:_______:||||||\n______________UGUGG______UAG_ACCGAC_CG_CAU_______UACUACU\n3'-UUU...GCGGU_____UCCCUU___A______G__G___UUAAUAA_______CAAUG...GUG-5'\n_____________|__________________________________________|\n_____________78_________________________________________35\n |
276 -- 282 |
36 -- 42 |
-31.2682 kcal/mol |
9.31707 kcal/mol |
9.36195 kcal/mol |
249 283@LB@ | |@LB@5'-UGG...CGGUU UUUUUU G CCGUU...UGG-3'@LB@ ACGCC GUC UGGCUG GC GUG GUGAUGA@LB@ ||:|| :|| |||||| || ||: :||||||@LB@ UGUGG UAG ACCGAC CG CAU UACUACU@LB@3'-UUU...GCGGU UCCCUU A G G UUAAUAA CAAUG...GUG-5'@LB@ | |@LB@ 78 35@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -31.2682 kcal/mol@LB@Unfolding Energy - mRNA 9.31707 kcal/mol@LB@Unfolding Energy - sRNA 9.36195 kcal/mol@LB@@LB@Position - mRNA 250 -- 282@LB@Position - sRNA 36 -- 77@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 36 -- 42@LB@ |
49 |
0.00252 |
0.1727 |
b3452 |
ugpA |
-14.40 |
0.019328 |
59 -- 78 |
52 -- 70 |
sn-glycerol-3-phosphate ABC transporter permease |
|
_____________58___________________79\n_____________|____________________|\n5'-GAG...AGCGU_______AGUU_________CUUUG...CGG-3'\n______________GGAAAUC____GCUGCGCCG\n______________|||||||____|||||||||\n______________CCUUUAG____CGACGCGGC\n3'-UUU...UGGUC_______AAC__________AUUUA...GUG-5'\n_____________|____________________|\n_____________71___________________51\n |
72 -- 78 |
52 -- 58 |
-27.9409 kcal/mol |
6.69662 kcal/mol |
6.84683 kcal/mol |
58 79@LB@ | |@LB@5'-GAG...AGCGU AGUU CUUUG...CGG-3'@LB@ GGAAAUC GCUGCGCCG@LB@ ||||||| |||||||||@LB@ CCUUUAG CGACGCGGC@LB@3'-UUU...UGGUC AAC AUUUA...GUG-5'@LB@ | |@LB@ 71 51@LB@@LB@@LB@Energy -14.40 kcal/mol@LB@Hybridization Energy -27.9409 kcal/mol@LB@Unfolding Energy - mRNA 6.69662 kcal/mol@LB@Unfolding Energy - sRNA 6.84683 kcal/mol@LB@@LB@Position - mRNA 59 -- 78@LB@Position - sRNA 52 -- 70@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 52 -- 58@LB@ |
50 |
0.002535 |
0.1727 |
b1879 |
flhA |
-12.13 |
0.054078 |
218 -- 247 |
64 -- 89 |
putative flagellar export pore protein |
|
_____________217______________________________248\n_____________|________________________________|\n5'-GCC...GCCGC___________U__CCGCAA___U________GACAC...CGA-3'\n______________GAUGCUGCGCC_GC______ACC___GAAAUC\n______________:||:|||||||_:|______|||___||||||\n______________UUAUGACGCGG_UG______UGG___CUUUAG\n3'-UUU...CGCGC___________U___________UCC______AACCG...GUG-5'\n_____________|________________________________|\n_____________90_______________________________63\n |
222 -- 228 |
79 -- 85 |
-26.8051 kcal/mol |
6.79061 kcal/mol |
7.88317 kcal/mol |
217 248@LB@ | |@LB@5'-GCC...GCCGC U CCGCAA U GACAC...CGA-3'@LB@ GAUGCUGCGCC GC ACC GAAAUC@LB@ :||:||||||| :| ||| ||||||@LB@ UUAUGACGCGG UG UGG CUUUAG@LB@3'-UUU...CGCGC U UCC AACCG...GUG-5'@LB@ | |@LB@ 90 63@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -26.8051 kcal/mol@LB@Unfolding Energy - mRNA 6.79061 kcal/mol@LB@Unfolding Energy - sRNA 7.88317 kcal/mol@LB@@LB@Position - mRNA 218 -- 247@LB@Position - sRNA 64 -- 89@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 79 -- 85@LB@ |