42 |
0.0004615 |
0.03766 |
b3341 |
rpsG |
-11.13 |
0.020425 |
227 -- 249 |
53 -- 76 |
30S ribosomal subunit protein S7 |
|
_____________226______________________250\n_____________|________________________|\n5'-CGG...GGUCA__GU________U___________AGUUC...AUG-3'\n______________GC__AAA_AUUC_GCCGGAUCCGA\n______________||__|||_||||_|||::||||||\n______________CG__UUU_UAAG_CGGUUUAGGCU\n3'-AUU...CCCGC__AU___A____U___________AAUGC...AUG-5'\n_____________|________________________|\n_____________77_______________________52\n |
243 -- 249 |
53 -- 59 |
-23.8099 kcal/mol |
6.33566 kcal/mol |
6.36489 kcal/mol |
226 250@LB@ | |@LB@5'-CGG...GGUCA GU U AGUUC...AUG-3'@LB@ GC AAA AUUC GCCGGAUCCGA@LB@ || ||| |||| |||::||||||@LB@ CG UUU UAAG CGGUUUAGGCU@LB@3'-AUU...CCCGC AU A U AAUGC...AUG-5'@LB@ | |@LB@ 77 52@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -23.8099 kcal/mol@LB@Unfolding Energy - mRNA 6.33566 kcal/mol@LB@Unfolding Energy - sRNA 6.36489 kcal/mol@LB@@LB@Position - mRNA 227 -- 249@LB@Position - sRNA 53 -- 76@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 53 -- 59@LB@ |
39 |
0.0004396 |
0.03766 |
b3669 |
uhpA |
-8.50 |
0.116685 |
77 -- 96 |
47 -- 66 |
response regulator in two-component regulatory system wtih UhpB |
|
_____________76___________________97\n_____________|____________________|\n5'-UCA...CGUAA______C_______CG____UUAAC...UUG-3'\n______________UCAGUC_GAUCCGA__AUGU\n______________||||:|_:||||||__|:||\n______________AGUCGG_UUAGGCU__UGCA\n3'-AUU...UUAUA______U_______AA____CUUCA...AUG-5'\n_____________|____________________|\n_____________67___________________46\n |
84 -- 90 |
53 -- 59 |
-21.6061 kcal/mol |
5.63687 kcal/mol |
7.4916 kcal/mol |
76 97@LB@ | |@LB@5'-UCA...CGUAA C CG UUAAC...UUG-3'@LB@ UCAGUC GAUCCGA AUGU@LB@ ||||:| :|||||| |:||@LB@ AGUCGG UUAGGCU UGCA@LB@3'-AUU...UUAUA U AA CUUCA...AUG-5'@LB@ | |@LB@ 67 46@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -21.6061 kcal/mol@LB@Unfolding Energy - mRNA 5.63687 kcal/mol@LB@Unfolding Energy - sRNA 7.4916 kcal/mol@LB@@LB@Position - mRNA 77 -- 96@LB@Position - sRNA 47 -- 66@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 53 -- 59@LB@ |
44 |
0.000471 |
0.03766 |
b3624 |
waaZ |
-7.10 |
0.250129 |
289 -- 295 |
1 -- 7 |
lipopolysaccharide KdoIII transferase; lipopolysaccharide core biosynthesis protein |
|
_____________288_____296\n_____________|_______|\n5'-AGA...UUCGG_______AUCGC-3'\n______________GCCCUAC\n______________:||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
289 -- 295 |
1 -- 7 |
-11.6335 kcal/mol |
2.52016 kcal/mol |
2.03949 kcal/mol |
288 296@LB@ | |@LB@5'-AGA...UUCGG AUCGC-3'@LB@ GCCCUAC@LB@ :||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -7.10 kcal/mol@LB@Hybridization Energy -11.6335 kcal/mol@LB@Unfolding Energy - mRNA 2.52016 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 289 -- 295@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 1 -- 7@LB@ |
40 |
0.0004513 |
0.03766 |
b3291 |
mscL |
-6.99 |
0.263134 |
48 -- 58 |
55 -- 65 |
mechanosensitive channel protein high conductance |
|
_____________47__________59\n_____________|___________|\n5'-UGU...UCUUC________C__UUUCU...UCU-3'\n______________CAGCCAAG_CC\n______________|||||||:_||\n______________GUCGGUUU_GG\n3'-AUU...UAUAA________A__CUAAU...AUG-5'\n_____________|___________|\n_____________66__________54\n |
49 -- 55 |
58 -- 64 |
-14.9389 kcal/mol |
1.90813 kcal/mol |
6.05961 kcal/mol |
47 59@LB@ | |@LB@5'-UGU...UCUUC C UUUCU...UCU-3'@LB@ CAGCCAAG CC@LB@ |||||||: ||@LB@ GUCGGUUU GG@LB@3'-AUU...UAUAA A CUAAU...AUG-5'@LB@ | |@LB@ 66 54@LB@@LB@@LB@Energy -6.99 kcal/mol@LB@Hybridization Energy -14.9389 kcal/mol@LB@Unfolding Energy - mRNA 1.90813 kcal/mol@LB@Unfolding Energy - sRNA 6.05961 kcal/mol@LB@@LB@Position - mRNA 48 -- 58@LB@Position - sRNA 55 -- 65@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 58 -- 64@LB@ |
45 |
0.0004826 |
0.03773 |
b4133 |
cadC |
-9.27 |
0.072737 |
38 -- 110 |
5 -- 66 |
cadBA operon transcriptional activator |
|
_____________37______________________________________________________________________________111\n_____________|_______________________________________________________________________________|\n5'-GAU...GGUUC_____A______U_______AAUACUAUGUAAUCAA_____UUAU_______UAAAAAU__________A_________AAUAA...UAA-3'\n______________UCAGU_AAAUCC__UU_CGU________________GAAGU____GG_CUGG_______AACGUCUUGC_UUC___ACC\n______________||||:_||||||__||_|||________________|||||____||_|||:_______|||:||||:|_:||___|||\n______________AGUCG_UUUAGG__AA_GCA________________CUUCA____CC_GACU_______UUGUAGAAUG_GAG___UGG\n3'-AUU...UUAUA_____G______CU__U________________________UUUU__A____UUCUAUC______________ACA___GAUG-5'\n_____________|_______________________________________________________________________________|\n_____________67______________________________________________________________________________4\n |
97 -- 103 |
14 -- 20 |
-38.0459 kcal/mol |
10.2122 kcal/mol |
18.5819 kcal/mol |
37 111@LB@ | |@LB@5'-GAU...GGUUC A U AAUACUAUGUAAUCAA UUAU UAAAAAU A AAUAA...UAA-3'@LB@ UCAGU AAAUCC UU CGU GAAGU GG CUGG AACGUCUUGC UUC ACC@LB@ ||||: |||||| || ||| ||||| || |||: |||:||||:| :|| |||@LB@ AGUCG UUUAGG AA GCA CUUCA CC GACU UUGUAGAAUG GAG UGG@LB@3'-AUU...UUAUA G CU U UUUU A UUCUAUC ACA GAUG-5'@LB@ | |@LB@ 67 4@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -38.0459 kcal/mol@LB@Unfolding Energy - mRNA 10.2122 kcal/mol@LB@Unfolding Energy - sRNA 18.5819 kcal/mol@LB@@LB@Position - mRNA 38 -- 110@LB@Position - sRNA 5 -- 66@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 14 -- 20@LB@ |
47 |
0.0005047 |
0.03778 |
b1888 |
cheA |
-10.26 |
0.037926 |
179 -- 191 |
53 -- 66 |
fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
|
_____________178____________192\n_____________|______________|\n5'-GAU...UGCCA______________GGUGA...AAG-3'\n______________UCAGCCGAA_CCGA\n______________||||||:||_||||\n______________AGUCGGUUU_GGCU\n3'-AUU...UUAUA_________A____AAUGC...AUG-5'\n_____________|______________|\n_____________67_____________52\n |
181 -- 187 |
58 -- 64 |
-19.401 kcal/mol |
2.99348 kcal/mol |
6.16775 kcal/mol |
178 192@LB@ | |@LB@5'-GAU...UGCCA GGUGA...AAG-3'@LB@ UCAGCCGAA CCGA@LB@ ||||||:|| ||||@LB@ AGUCGGUUU GGCU@LB@3'-AUU...UUAUA A AAUGC...AUG-5'@LB@ | |@LB@ 67 52@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -19.401 kcal/mol@LB@Unfolding Energy - mRNA 2.99348 kcal/mol@LB@Unfolding Energy - sRNA 6.16775 kcal/mol@LB@@LB@Position - mRNA 179 -- 191@LB@Position - sRNA 53 -- 66@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 58 -- 64@LB@ |
46 |
0.0005017 |
0.03778 |
b1713 |
pheT |
-7.80 |
0.173677 |
95 -- 107 |
17 -- 29 |
phenylalanine tRNA synthetase beta subunit |
|
_____________94____________108\n_____________|_____________|\n5'-CUG...GAUGG_____________GACUA...ACG-3'\n______________GGAUGGAGCGUCU\n______________:|||:||:|:|||\n______________UCUAUCUUGUAGA\n3'-AUU...GACUU_____________AUGGA...AUG-5'\n_____________|_____________|\n_____________30____________16\n |
100 -- 106 |
18 -- 24 |
-17.5948 kcal/mol |
5.55471 kcal/mol |
4.26164 kcal/mol |
94 108@LB@ | |@LB@5'-CUG...GAUGG GACUA...ACG-3'@LB@ GGAUGGAGCGUCU@LB@ :|||:||:|:|||@LB@ UCUAUCUUGUAGA@LB@3'-AUU...GACUU AUGGA...AUG-5'@LB@ | |@LB@ 30 16@LB@@LB@@LB@Energy -7.80 kcal/mol@LB@Hybridization Energy -17.5948 kcal/mol@LB@Unfolding Energy - mRNA 5.55471 kcal/mol@LB@Unfolding Energy - sRNA 4.26164 kcal/mol@LB@@LB@Position - mRNA 95 -- 107@LB@Position - sRNA 17 -- 29@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 18 -- 24@LB@ |
49 |
0.0005477 |
0.03933 |
b2715 |
ascF |
-9.59 |
0.059292 |
173 -- 180 |
1 -- 8 |
cellobiose/arbutin/salicin-specific PTS enzymes IIB and IC components |
|
_____________172______181\n_____________|________|\n5'-UGC...ACAUC________UGAUA...GCU-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
174 -- 180 |
1 -- 7 |
-12.1729 kcal/mol |
0.486168 kcal/mol |
2.11603 kcal/mol |
172 181@LB@ | |@LB@5'-UGC...ACAUC UGAUA...GCU-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -12.1729 kcal/mol@LB@Unfolding Energy - mRNA 0.486168 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 173 -- 180@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 1 -- 7@LB@ |
48 |
0.0005438 |
0.03933 |
b0811 |
glnH |
-6.95 |
0.268265 |
70 -- 77 |
1 -- 8 |
glutamine transporter subunit |
|
_____________69_______78\n_____________|________|\n5'-AUC...GGUAU________AAAUC...CCG-3'\n______________UGCCCUAU\n______________|:|||||:\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
71 -- 77 |
1 -- 7 |
-10.5963 kcal/mol |
1.549 kcal/mol |
2.11603 kcal/mol |
69 78@LB@ | |@LB@5'-AUC...GGUAU AAAUC...CCG-3'@LB@ UGCCCUAU@LB@ |:|||||:@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -6.95 kcal/mol@LB@Hybridization Energy -10.5963 kcal/mol@LB@Unfolding Energy - mRNA 1.549 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 70 -- 77@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 1 -- 7@LB@ |
50 |
0.0006038 |
0.04249 |
b3755 |
yieP |
-5.20 |
0.556147 |
189 -- 196 |
25 -- 32 |
putative transcriptional regulator |
|
_____________188______197\n_____________|________|\n5'-UUC...AAAAA________AGUAA...CCG-3'\n______________GGAAGAUA\n______________|:||||||\n______________CUUUCUAU\n3'-AUU...CCAGA________CUUGU...AUG-5'\n_____________|________|\n_____________33_______24\n |
190 -- 196 |
25 -- 31 |
-8.32385 kcal/mol |
1.19727 kcal/mol |
1.85262 kcal/mol |
188 197@LB@ | |@LB@5'-UUC...AAAAA AGUAA...CCG-3'@LB@ GGAAGAUA@LB@ |:||||||@LB@ CUUUCUAU@LB@3'-AUU...CCAGA CUUGU...AUG-5'@LB@ | |@LB@ 33 24@LB@@LB@@LB@Energy -5.20 kcal/mol@LB@Hybridization Energy -8.32385 kcal/mol@LB@Unfolding Energy - mRNA 1.19727 kcal/mol@LB@Unfolding Energy - sRNA 1.85262 kcal/mol@LB@@LB@Position - mRNA 189 -- 196@LB@Position - sRNA 25 -- 32@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 25 -- 31@LB@ |