42 |
0.000828 |
0.06626 |
b2129 |
yehX |
-13.83 |
0.023625 |
55 -- 85 |
15 -- 47 |
putative ABC transporter ATPase |
|
_____________54________________________________86\n_____________|_________________________________|\n5'-GGU...GGCGC___C___________________UUUCCAG___CUGCU...UUG-3'\n______________AGG_GGUU_UUGGUGC_GCUGGU_______GGG\n______________|||_||||_:||||:|_|||:|:_______|||\n______________UCC_CCAA_GACCAUG_CGAUCG_______CCC\n3'-UUU...AUUCC___A____G_______U______UAAAAUA___AAUAC...UCG-5'\n_____________|_________________________________|\n_____________48________________________________14\n |
63 -- 69 |
32 -- 38 |
-32.2293 kcal/mol |
13.8239 kcal/mol |
4.57348 kcal/mol |
54 86@LB@ | |@LB@5'-GGU...GGCGC C UUUCCAG CUGCU...UUG-3'@LB@ AGG GGUU UUGGUGC GCUGGU GGG@LB@ ||| |||| :||||:| |||:|: |||@LB@ UCC CCAA GACCAUG CGAUCG CCC@LB@3'-UUU...AUUCC A G U UAAAAUA AAUAC...UCG-5'@LB@ | |@LB@ 48 14@LB@@LB@@LB@Energy -13.83 kcal/mol@LB@Hybridization Energy -32.2293 kcal/mol@LB@Unfolding Energy - mRNA 13.8239 kcal/mol@LB@Unfolding Energy - sRNA 4.57348 kcal/mol@LB@@LB@Position - mRNA 55 -- 85@LB@Position - sRNA 15 -- 47@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 32 -- 38@LB@ |
40 |
0.0008246 |
0.06626 |
b4019 |
metH |
-11.44 |
0.086775 |
244 -- 271 |
15 -- 42 |
homocysteine-N5-methyltetrahydrofolate transmethylase B12-dependent |
|
_____________243____________________________272\n_____________|______________________________|\n5'-UGA...UGAAC__A_________U__AC____G________CACCA...ACG-3'\n______________GU_UUCUGGUGC_GG__GGCG___UAUGGG\n______________||_|:|||||:|_:|__:||:___||||||\n______________CA_AGGACCAUG_UC__UCGU___AUACCC\n3'-UUU...UCCAC_______________GA____AAA______AAUAC...UCG-5'\n_____________|______________________________|\n_____________43_____________________________14\n |
249 -- 255 |
32 -- 38 |
-26.1297 kcal/mol |
10.116 kcal/mol |
4.57031 kcal/mol |
243 272@LB@ | |@LB@5'-UGA...UGAAC A U AC G CACCA...ACG-3'@LB@ GU UUCUGGUGC GG GGCG UAUGGG@LB@ || |:|||||:| :| :||: ||||||@LB@ CA AGGACCAUG UC UCGU AUACCC@LB@3'-UUU...UCCAC GA AAA AAUAC...UCG-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -26.1297 kcal/mol@LB@Unfolding Energy - mRNA 10.116 kcal/mol@LB@Unfolding Energy - sRNA 4.57031 kcal/mol@LB@@LB@Position - mRNA 244 -- 271@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 32 -- 38@LB@ |
43 |
0.0008959 |
0.07003 |
b3068 |
mug |
-12.52 |
0.050096 |
232 -- 248 |
1 -- 17 |
G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase |
|
_____________231_______________249\n_____________|_________________|\n5'-UGG...GUUAC____C_______G____AUCAA...CGG-3'\n______________GGGU_GUGUUUU_CGGU\n______________||||_:||||||_|:|:\n______________CCCA_UACAAAA_GUCG\n3'-UUU...AAAUA____A_______A____-5'\n_____________|________________|\n_____________18_______________1\n |
237 -- 243 |
6 -- 12 |
-17.5569 kcal/mol |
4.10869 kcal/mol |
0.931609 kcal/mol |
231 249@LB@ | |@LB@5'-UGG...GUUAC C G AUCAA...CGG-3'@LB@ GGGU GUGUUUU CGGU@LB@ |||| :|||||| |:|:@LB@ CCCA UACAAAA GUCG@LB@3'-UUU...AAAUA A A -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -12.52 kcal/mol@LB@Hybridization Energy -17.5569 kcal/mol@LB@Unfolding Energy - mRNA 4.10869 kcal/mol@LB@Unfolding Energy - sRNA 0.931609 kcal/mol@LB@@LB@Position - mRNA 232 -- 248@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 6 -- 12@LB@ |
44 |
0.0009392 |
0.07174 |
b3453 |
ugpB |
-12.21 |
0.059079 |
239 -- 268 |
1 -- 32 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________238_______________________________269\n_____________|_________________________________|\n5'-UUC...GCGCU___A________A______GA___CACA_____AGUGA...UGG-3'\n______________CGG_CUGGCGUU__AUGGG__AUG______GGC\n______________|:|_||:||:||__|||||__|||______:||\n______________GUC_GAUCGUAA__UACCC__UAC______UCG\n3'-UUU...ACCAU____________AA_____AA___AAAAAG___-5'\n_____________|________________________________|\n_____________33_______________________________1\n |
244 -- 250 |
22 -- 28 |
-24.6308 kcal/mol |
10.9347 kcal/mol |
1.49075 kcal/mol |
238 269@LB@ | |@LB@5'-UUC...GCGCU A A GA CACA AGUGA...UGG-3'@LB@ CGG CUGGCGUU AUGGG AUG GGC@LB@ |:| ||:||:|| ||||| ||| :||@LB@ GUC GAUCGUAA UACCC UAC UCG@LB@3'-UUU...ACCAU AA AA AAAAAG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -24.6308 kcal/mol@LB@Unfolding Energy - mRNA 10.9347 kcal/mol@LB@Unfolding Energy - sRNA 1.49075 kcal/mol@LB@@LB@Position - mRNA 239 -- 268@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 22 -- 28@LB@ |
47 |
0.001093 |
0.07744 |
b0128 |
yadH |
-6.67 |
0.521304 |
272 -- 286 |
25 -- 36 |
putative ABC transporter permease |
|
_____________271_____________287\n_____________|_______________|\n5'-UUA...AUCUG_______ACG_____GCCGC...UCA-3'\n______________GGUGCAG___CUGGU\n______________|||:|||___||:|:\n______________CCAUGUC___GAUCG\n3'-UUU...AAGGA_______________UAAAA...UCG-5'\n_____________|_______________|\n_____________37______________24\n |
272 -- 278 |
30 -- 36 |
-13.5693 kcal/mol |
5.47586 kcal/mol |
1.42738 kcal/mol |
271 287@LB@ | |@LB@5'-UUA...AUCUG ACG GCCGC...UCA-3'@LB@ GGUGCAG CUGGU@LB@ |||:||| ||:|:@LB@ CCAUGUC GAUCG@LB@3'-UUU...AAGGA UAAAA...UCG-5'@LB@ | |@LB@ 37 24@LB@@LB@@LB@Energy -6.67 kcal/mol@LB@Hybridization Energy -13.5693 kcal/mol@LB@Unfolding Energy - mRNA 5.47586 kcal/mol@LB@Unfolding Energy - sRNA 1.42738 kcal/mol@LB@@LB@Position - mRNA 272 -- 286@LB@Position - sRNA 25 -- 36@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 30 -- 36@LB@ |
45 |
0.001037 |
0.07744 |
b0857 |
potI |
-11.49 |
0.084883 |
37 -- 88 |
3 -- 46 |
putrescine ABC transporter permease |
|
_____________36______________________________________________________89\n_____________|_______________________________________________________|\n5'-CCG...UGCUC_________C________AUCAUGAUCGGGC____GC_____CAAGA________AUAAC...AUU-3'\n______________GGUGG__CC_GG_ACAGC_____________GCGU__UAUGG_____GUUUUUCA\n______________|||||__||_||_|||||_____________||:|__|||||_____||||||||\n______________CCACC__GG_CC_UGUCG_____________CGUA__AUACC_____CAAAAAGU\n3'-UUU...UUCCU_____AA__A__A_____AU_______________AA_____CAAUA________CG-5'\n_____________|_______________________________________________________|\n_____________47______________________________________________________2\n |
82 -- 88 |
3 -- 9 |
-33.7321 kcal/mol |
17.6344 kcal/mol |
4.60931 kcal/mol |
36 89@LB@ | |@LB@5'-CCG...UGCUC C AUCAUGAUCGGGC GC CAAGA AUAAC...AUU-3'@LB@ GGUGG CC GG ACAGC GCGU UAUGG GUUUUUCA@LB@ ||||| || || ||||| ||:| ||||| ||||||||@LB@ CCACC GG CC UGUCG CGUA AUACC CAAAAAGU@LB@3'-UUU...UUCCU AA A A AU AA CAAUA CG-5'@LB@ | |@LB@ 47 2@LB@@LB@@LB@Energy -11.49 kcal/mol@LB@Hybridization Energy -33.7321 kcal/mol@LB@Unfolding Energy - mRNA 17.6344 kcal/mol@LB@Unfolding Energy - sRNA 4.60931 kcal/mol@LB@@LB@Position - mRNA 37 -- 88@LB@Position - sRNA 3 -- 46@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 3 -- 9@LB@ |
53 |
0.001234 |
0.07744 |
b0884 |
infA |
-13.12 |
0.035785 |
57 -- 86 |
2 -- 40 |
translation initiation factor IF-1 |
|
_____________56_______________________________________87\n_____________|________________________________________|\n5'-UUU...UGCGC____________U____CG_____________________AGUAA...CUG-3'\n______________UUUUGGUGCGGC_UAGC___________UGUG_UUUUCGG\n______________|::||||:|:||_||||___________|:||_|||||:|\n______________AGGACCAUGUCG_AUCG___________AUAC_AAAAGUC\n3'-UUU...CACCA_________________UAAAAUACCCA____A_______G-5'\n_____________|________________________________________|\n_____________41_______________________________________1\n |
80 -- 86 |
2 -- 8 |
-28.8253 kcal/mol |
11.0921 kcal/mol |
4.60818 kcal/mol |
56 87@LB@ | |@LB@5'-UUU...UGCGC U CG AGUAA...CUG-3'@LB@ UUUUGGUGCGGC UAGC UGUG UUUUCGG@LB@ |::||||:|:|| |||| |:|| |||||:|@LB@ AGGACCAUGUCG AUCG AUAC AAAAGUC@LB@3'-UUU...CACCA UAAAAUACCCA A G-5'@LB@ | |@LB@ 41 1@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -28.8253 kcal/mol@LB@Unfolding Energy - mRNA 11.0921 kcal/mol@LB@Unfolding Energy - sRNA 4.60818 kcal/mol@LB@@LB@Position - mRNA 57 -- 86@LB@Position - sRNA 2 -- 40@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 2 -- 8@LB@ |
54 |
0.001244 |
0.07744 |
b1874 |
cutC |
-11.77 |
0.073856 |
3 -- 15 |
22 -- 35 |
copper homeostasis protein |
|
_____________2______________16\n_____________|______________|\n_________5'-CC______________GCUUU...AGG-3'\n______________GUGC_GCUGGCAUU\n______________||:|_|||:|||||\n______________CAUG_CGAUCGUAA\n3'-UUU...AGGAC____U_________AAUAC...UCG-5'\n_____________|______________|\n_____________36_____________21\n |
9 -- 15 |
22 -- 28 |
-17.4456 kcal/mol |
4.24515 kcal/mol |
1.43095 kcal/mol |
2 16@LB@ | |@LB@ 5'-CC GCUUU...AGG-3'@LB@ GUGC GCUGGCAUU@LB@ ||:| |||:|||||@LB@ CAUG CGAUCGUAA@LB@3'-UUU...AGGAC U AAUAC...UCG-5'@LB@ | |@LB@ 36 21@LB@@LB@@LB@Energy -11.77 kcal/mol@LB@Hybridization Energy -17.4456 kcal/mol@LB@Unfolding Energy - mRNA 4.24515 kcal/mol@LB@Unfolding Energy - sRNA 1.43095 kcal/mol@LB@@LB@Position - mRNA 3 -- 15@LB@Position - sRNA 22 -- 35@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 22 -- 28@LB@ |
51 |
0.001198 |
0.07744 |
b2174 |
lpxT |
-10.53 |
0.132559 |
260 -- 270 |
31 -- 41 |
lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase |
|
_____________259_________271\n_____________|___________|\n5'-GAA...UUUCU___________UCCCC...CGA-3'\n______________UUCCUGGUAUA\n______________|||||||||:|\n______________AAGGACCAUGU\n3'-UUU...CCACC___________CGAUC...UCG-5'\n_____________|___________|\n_____________42__________30\n |
264 -- 270 |
31 -- 37 |
-15.7095 kcal/mol |
1.92057 kcal/mol |
3.2552 kcal/mol |
259 271@LB@ | |@LB@5'-GAA...UUUCU UCCCC...CGA-3'@LB@ UUCCUGGUAUA@LB@ |||||||||:|@LB@ AAGGACCAUGU@LB@3'-UUU...CCACC CGAUC...UCG-5'@LB@ | |@LB@ 42 30@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -15.7095 kcal/mol@LB@Unfolding Energy - mRNA 1.92057 kcal/mol@LB@Unfolding Energy - sRNA 3.2552 kcal/mol@LB@@LB@Position - mRNA 260 -- 270@LB@Position - sRNA 31 -- 41@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 31 -- 37@LB@ |
52 |
0.001222 |
0.07744 |
b2217 |
rcsB |
-14.74 |
0.013297 |
68 -- 91 |
9 -- 38 |
response regulator in two-component regulatory system with RcsC and YojN |
|
_____________67_______________________________92\n_____________|________________________________|\n5'-AAC...UAAAU_______CC___A___________________GAAAC...GCG-3'\n______________CUGGUAC__GGC_AGCA________GUUAUGU\n______________|||||||__:||_||||________|||||||\n______________GACCAUG__UCG_UCGU________CAAUACA\n3'-UUU...CCAAG____________A____AAAAUACC_______AAAAGUCG-5'\n_____________|________________________________|\n_____________39_______________________________8\n |
85 -- 91 |
9 -- 15 |
-24.0406 kcal/mol |
4.76673 kcal/mol |
4.53501 kcal/mol |
67 92@LB@ | |@LB@5'-AAC...UAAAU CC A GAAAC...GCG-3'@LB@ CUGGUAC GGC AGCA GUUAUGU@LB@ ||||||| :|| |||| |||||||@LB@ GACCAUG UCG UCGU CAAUACA@LB@3'-UUU...CCAAG A AAAAUACC AAAAGUCG-5'@LB@ | |@LB@ 39 8@LB@@LB@@LB@Energy -14.74 kcal/mol@LB@Hybridization Energy -24.0406 kcal/mol@LB@Unfolding Energy - mRNA 4.76673 kcal/mol@LB@Unfolding Energy - sRNA 4.53501 kcal/mol@LB@@LB@Position - mRNA 68 -- 91@LB@Position - sRNA 9 -- 38@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 9 -- 15@LB@ |