| 105 |
0.00174 |
0.07531 |
pa4182 |
N/A |
-13.56 |
0.025913 |
222 -- 265 |
39 -- 89 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________221__________________________________________________266\n_____________|____________________________________________________|\n5'-ACG...AUUUC____________C___CA____________GCA__C__________G_____UCCGC...CGG-3'\n______________GAAGAGUCCGAC__CG__GG_C_____GCU___CG_GCUGAUC_CG_GACUA\n______________||||||||||||__||__||_|_____|||___||_|||||||_||_|||:|\n______________CUUCUCAGGCUG__GC__CC_G_____CGA___GC_CGACUAG_GC_CUGGU\n3'-UUU...UUAGA____________AC__AC__A_AGAGU___AUG__________A__G_____CAACU...GUU-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________38\n |
251 -- 257 |
48 -- 54 |
-52.115 kcal/mol |
19.5257 kcal/mol |
19.0319 kcal/mol |
221 266@LB@ | |@LB@5'-ACG...AUUUC C CA GCA C G UCCGC...CGG-3'@LB@ GAAGAGUCCGAC CG GG C GCU CG GCUGAUC CG GACUA@LB@ |||||||||||| || || | ||| || ||||||| || |||:|@LB@ CUUCUCAGGCUG GC CC G CGA GC CGACUAG GC CUGGU@LB@3'-UUU...UUAGA AC AC A AGAGU AUG A G CAACU...GUU-5'@LB@ | |@LB@ 90 38@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -52.115 kcal/mol@LB@Unfolding Energy - mRNA 19.5257 kcal/mol@LB@Unfolding Energy - sRNA 19.0319 kcal/mol@LB@@LB@Position - mRNA 222 -- 265@LB@Position - sRNA 39 -- 89@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 116 |
0.00199 |
0.07883 |
pa4478 |
N/A |
-13.34 |
0.029660 |
177 -- 225 |
39 -- 82 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________176____________________________________________________226\n_____________|______________________________________________________|\n5'-CAA...AUCGC__________UUCCC___AGC______________UC____U_______CU___CCUCG...AGU-3'\n______________CCGAC_GCGU_____GGG___CUC_CA___UGCCG__GCUG_AUCUCGC__CCG\n______________|||||_||||_____|||___|||_||___|:|||__||||_|||||||__||:\n______________GGCUG_CGCA_____CCC___GAG_GU___AUGGC__CGAC_UAGAGCG__GGU\n3'-UUU...UCUCA_____A____________A_____A__CGA___________________CU___CAACU...GUU-5'\n_____________|______________________________________________________|\n_____________83_____________________________________________________38\n |
214 -- 220 |
44 -- 50 |
-46.9389 kcal/mol |
14.7161 kcal/mol |
18.8872 kcal/mol |
176 226@LB@ | |@LB@5'-CAA...AUCGC UUCCC AGC UC U CU CCUCG...AGU-3'@LB@ CCGAC GCGU GGG CUC CA UGCCG GCUG AUCUCGC CCG@LB@ ||||| |||| ||| ||| || |:||| |||| ||||||| ||:@LB@ GGCUG CGCA CCC GAG GU AUGGC CGAC UAGAGCG GGU@LB@3'-UUU...UCUCA A A A CGA CU CAACU...GUU-5'@LB@ | |@LB@ 83 38@LB@@LB@@LB@Energy -13.34 kcal/mol@LB@Hybridization Energy -46.9389 kcal/mol@LB@Unfolding Energy - mRNA 14.7161 kcal/mol@LB@Unfolding Energy - sRNA 18.8872 kcal/mol@LB@@LB@Position - mRNA 177 -- 225@LB@Position - sRNA 39 -- 82@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 142 |
0.003054 |
0.09883 |
pa4939 |
N/A |
-10.79 |
0.122172 |
84 -- 99 |
39 -- 58 |
ATP phosphoribosyltransferase |
|
_____________83___________________100\n_____________|____________________|\n5'-CGC...CAUCG____________________UCACC...AUC-3'\n______________GCCGGCUGA____GCGACCG\n______________:||||||||____||||||:\n______________UGGCCGACU____CGCUGGU\n3'-UUU...UCGAA_________AGAG_______CAACU...GUU-5'\n_____________|____________________|\n_____________59___________________38\n |
93 -- 99 |
39 -- 45 |
-28.5021 kcal/mol |
6.65531 kcal/mol |
11.0618 kcal/mol |
83 100@LB@ | |@LB@5'-CGC...CAUCG UCACC...AUC-3'@LB@ GCCGGCUGA GCGACCG@LB@ :|||||||| ||||||:@LB@ UGGCCGACU CGCUGGU@LB@3'-UUU...UCGAA AGAG CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -28.5021 kcal/mol@LB@Unfolding Energy - mRNA 6.65531 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 84 -- 99@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 171 |
0.004404 |
0.117 |
pa3327 |
N/A |
-14.55 |
0.013827 |
159 -- 238 |
39 -- 118 |
non-ribosomal peptide synthetase |
|
_____________158_______________________________________________________________________________________239\n_____________|_________________________________________________________________________________________|\n5'-AUU...GGUGC________C___GA__C__U___UUG___________GA____A_G_A___UUC_____G_UC___________A_______CCU____ACGGG...GCU-3'\n______________CCGUG_UU_GCC__AU_GA_GGA______UUGAAGAG__CG_C_G_G_UGG___GUUUC_C__GCUUGCC_GCU____UCGC___ACCA\n______________|||||_||_|||__||_||_|||______:|||||||__||_|_|_|_|||___||:||_|__||||:||_|||____||||___||||\n______________GGCAC_AA_CGG__UA_CU_CCU______GACUUCUC__GC_G_C_C_ACC___CAGAG_G__CGAAUGG_CGA____AGCG___UGGU\n3'-UUU...UUUUU_____U__U___AC_________CUAUUA________AG__U_A_G_____________A_U________C___CUAG____C______CAACU...GUU-5'\n_____________|_________________________________________________________________________________________|\n_____________119_______________________________________________________________________________________38\n |
217 -- 223 |
56 -- 62 |
-61.1953 kcal/mol |
23.2465 kcal/mol |
23.4063 kcal/mol |
158 239@LB@ | |@LB@5'-AUU...GGUGC C GA C U UUG GA A G A UUC G UC A CCU ACGGG...GCU-3'@LB@ CCGUG UU GCC AU GA GGA UUGAAGAG CG C G G UGG GUUUC C GCUUGCC GCU UCGC ACCA@LB@ ||||| || ||| || || ||| :||||||| || | | | ||| ||:|| | ||||:|| ||| |||| ||||@LB@ GGCAC AA CGG UA CU CCU GACUUCUC GC G C C ACC CAGAG G CGAAUGG CGA AGCG UGGU@LB@3'-UUU...UUUUU U U AC CUAUUA AG U A G A U C CUAG C CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.55 kcal/mol@LB@Hybridization Energy -61.1953 kcal/mol@LB@Unfolding Energy - mRNA 23.2465 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 159 -- 238@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 172 |
0.004404 |
0.117 |
pa3327 |
N/A |
-14.55 |
0.013827 |
159 -- 238 |
39 -- 118 |
non-ribosomal peptide synthetase |
|
_____________158_______________________________________________________________________________________239\n_____________|_________________________________________________________________________________________|\n5'-AUU...GGUGC________C___GA__C__U___UUG___________GA____A_G_A___UUC_____G_UC___________A_______CCU____ACGGG...GCU-3'\n______________CCGUG_UU_GCC__AU_GA_GGA______UUGAAGAG__CG_C_G_G_UGG___GUUUC_C__GCUUGCC_GCU____UCGC___ACCA\n______________|||||_||_|||__||_||_|||______:|||||||__||_|_|_|_|||___||:||_|__||||:||_|||____||||___||||\n______________GGCAC_AA_CGG__UA_CU_CCU______GACUUCUC__GC_G_C_C_ACC___CAGAG_G__CGAAUGG_CGA____AGCG___UGGU\n3'-UUU...UUUUU_____U__U___AC_________CUAUUA________AG__U_A_G_____________A_U________C___CUAG____C______CAACU...GUU-5'\n_____________|_________________________________________________________________________________________|\n_____________119_______________________________________________________________________________________38\n |
217 -- 223 |
56 -- 62 |
-61.1953 kcal/mol |
23.2465 kcal/mol |
23.4063 kcal/mol |
158 239@LB@ | |@LB@5'-AUU...GGUGC C GA C U UUG GA A G A UUC G UC A CCU ACGGG...GCU-3'@LB@ CCGUG UU GCC AU GA GGA UUGAAGAG CG C G G UGG GUUUC C GCUUGCC GCU UCGC ACCA@LB@ ||||| || ||| || || ||| :||||||| || | | | ||| ||:|| | ||||:|| ||| |||| ||||@LB@ GGCAC AA CGG UA CU CCU GACUUCUC GC G C C ACC CAGAG G CGAAUGG CGA AGCG UGGU@LB@3'-UUU...UUUUU U U AC CUAUUA AG U A G A U C CUAG C CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.55 kcal/mol@LB@Hybridization Energy -61.1953 kcal/mol@LB@Unfolding Energy - mRNA 23.2465 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 159 -- 238@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 173 |
0.004404 |
0.117 |
pa3327 |
N/A |
-14.55 |
0.013827 |
159 -- 238 |
39 -- 118 |
non-ribosomal peptide synthetase |
|
_____________158_______________________________________________________________________________________239\n_____________|_________________________________________________________________________________________|\n5'-AUU...GGUGC________C___GA__C__U___UUG___________GA____A_G_A___UUC_____G_UC___________A_______CCU____ACGGG...GCU-3'\n______________CCGUG_UU_GCC__AU_GA_GGA______UUGAAGAG__CG_C_G_G_UGG___GUUUC_C__GCUUGCC_GCU____UCGC___ACCA\n______________|||||_||_|||__||_||_|||______:|||||||__||_|_|_|_|||___||:||_|__||||:||_|||____||||___||||\n______________GGCAC_AA_CGG__UA_CU_CCU______GACUUCUC__GC_G_C_C_ACC___CAGAG_G__CGAAUGG_CGA____AGCG___UGGU\n3'-UUU...UUUUU_____U__U___AC_________CUAUUA________AG__U_A_G_____________A_U________C___CUAG____C______CAACU...GUU-5'\n_____________|_________________________________________________________________________________________|\n_____________119_______________________________________________________________________________________38\n |
217 -- 223 |
56 -- 62 |
-61.1953 kcal/mol |
23.2465 kcal/mol |
23.4063 kcal/mol |
158 239@LB@ | |@LB@5'-AUU...GGUGC C GA C U UUG GA A G A UUC G UC A CCU ACGGG...GCU-3'@LB@ CCGUG UU GCC AU GA GGA UUGAAGAG CG C G G UGG GUUUC C GCUUGCC GCU UCGC ACCA@LB@ ||||| || ||| || || ||| :||||||| || | | | ||| ||:|| | ||||:|| ||| |||| ||||@LB@ GGCAC AA CGG UA CU CCU GACUUCUC GC G C C ACC CAGAG G CGAAUGG CGA AGCG UGGU@LB@3'-UUU...UUUUU U U AC CUAUUA AG U A G A U C CUAG C CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.55 kcal/mol@LB@Hybridization Energy -61.1953 kcal/mol@LB@Unfolding Energy - mRNA 23.2465 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 159 -- 238@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 184 |
0.004799 |
0.1199 |
pa1298 |
N/A |
-15.65 |
0.006528 |
2 -- 21 |
39 -- 58 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________1_____________________22\n_____________|_____________________|\n__________5'-C____________C________UCAUG...GCG-3'\n______________GCCGGC_GAUUU_CGCGACCA\n______________:|||||_|||:|_||||||||\n______________UGGCCG_CUAGA_GCGCUGGU\n3'-UUU...UCGAA______A______________CAACU...GUU-5'\n_____________|_____________________|\n_____________59____________________38\n |
15 -- 21 |
39 -- 45 |
-31.6445 kcal/mol |
4.93108 kcal/mol |
11.0618 kcal/mol |
1 22@LB@ | |@LB@ 5'-C C UCAUG...GCG-3'@LB@ GCCGGC GAUUU CGCGACCA@LB@ :||||| |||:| ||||||||@LB@ UGGCCG CUAGA GCGCUGGU@LB@3'-UUU...UCGAA A CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -31.6445 kcal/mol@LB@Unfolding Energy - mRNA 4.93108 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 15 |
2.583e-05 |
0.007914 |
pa3049 |
rmf |
-22.33 |
0.000014 |
230 -- 282 |
40 -- 88 |
ribosome modulation factor |
|
_____________229____________________________________________________283\n_____________|______________________________________________________|\n5'-CGA...UUGGA________UU_U_______UUA__AGAA____AUA______AA___________UUUGU...AUC-3'\n______________AAGAG_CC__C_UGCGUGG___UC____CGGC___ACCGGU__AUCUCGUGAUC\n______________|||||_||__|_|||||||___||____|:||___|||||:__||||||:||:|\n______________UUCUC_GG__G_ACGCACC___AG____GUCG___UGGCCG__UAGAGCGCUGG\n3'-UUU...UAGAC_____A__CU_________CAG__A_______AA_______AC___________UCAAC...GUU-5'\n_____________|______________________________________________________|\n_____________89_____________________________________________________39\n |
276 -- 282 |
40 -- 46 |
-52.7199 kcal/mol |
11.3783 kcal/mol |
19.0139 kcal/mol |
229 283@LB@ | |@LB@5'-CGA...UUGGA UU U UUA AGAA AUA AA UUUGU...AUC-3'@LB@ AAGAG CC C UGCGUGG UC CGGC ACCGGU AUCUCGUGAUC@LB@ ||||| || | ||||||| || |:|| |||||: ||||||:||:|@LB@ UUCUC GG G ACGCACC AG GUCG UGGCCG UAGAGCGCUGG@LB@3'-UUU...UAGAC A CU CAG A AA AC UCAAC...GUU-5'@LB@ | |@LB@ 89 39@LB@@LB@@LB@Energy -22.33 kcal/mol@LB@Hybridization Energy -52.7199 kcal/mol@LB@Unfolding Energy - mRNA 11.3783 kcal/mol@LB@Unfolding Energy - sRNA 19.0139 kcal/mol@LB@@LB@Position - mRNA 230 -- 282@LB@Position - sRNA 40 -- 88@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 28 |
7.532e-05 |
0.01177 |
pa2865 |
N/A |
-15.38 |
0.007930 |
179 -- 247 |
40 -- 110 |
glycosylase |
|
_____________178__________________________________________________________________________248\n_____________|____________________________________________________________________________|\n5'-CCG...CAUCG_______CCUCU_____CCUGGA___C_C________________________U_____U______G_________CUUGC...AAC-3'\n______________AGCCUGG_____GGAGA______UGA_G_GUCUG_UUGC_UG___CUUUC_GC_UUGCC_GCUGGU_CUCGC_ACC\n______________||||||:_____|||||______|||_|_|||:|_:|||_||___||:||_||_||:||_||||:|_|||||_|||\n______________UCGGACU_____CCUCU______ACU_C_CAGGC_GACG_AC___GAGAG_CG_AAUGG_CGACUA_GAGCG_UGG\n3'-UUU...ACUAA_______ACU_______AUUAG____U_U_____U____C__CCA_____U________C____________C___UCAAC...GUU-5'\n_____________|____________________________________________________________________________|\n_____________111__________________________________________________________________________39\n |
179 -- 185 |
104 -- 110 |
-64.7758 kcal/mol |
26.0418 kcal/mol |
23.3621 kcal/mol |
178 248@LB@ | |@LB@5'-CCG...CAUCG CCUCU CCUGGA C C U U G CUUGC...AAC-3'@LB@ AGCCUGG GGAGA UGA G GUCUG UUGC UG CUUUC GC UUGCC GCUGGU CUCGC ACC@LB@ ||||||: ||||| ||| | |||:| :||| || ||:|| || ||:|| ||||:| ||||| |||@LB@ UCGGACU CCUCU ACU C CAGGC GACG AC GAGAG CG AAUGG CGACUA GAGCG UGG@LB@3'-UUU...ACUAA ACU AUUAG U U U C CCA U C C UCAAC...GUU-5'@LB@ | |@LB@ 111 39@LB@@LB@@LB@Energy -15.38 kcal/mol@LB@Hybridization Energy -64.7758 kcal/mol@LB@Unfolding Energy - mRNA 26.0418 kcal/mol@LB@Unfolding Energy - sRNA 23.3621 kcal/mol@LB@@LB@Position - mRNA 179 -- 247@LB@Position - sRNA 40 -- 110@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 67 |
0.0007208 |
0.0493 |
pa0304 |
spuH |
-8.66 |
0.319981 |
266 -- 281 |
40 -- 54 |
polyamine transporter PotI |
|
_____________265______________282\n_____________|________________|\n5'-CAA...CCGAU_______C_G______UAUUC...CCA-3'\n______________GCUGAUC_U_GUGAUC\n______________|||||||_|_|:||:|\n______________CGACUAG_A_CGCUGG\n3'-UUU...AUGGC_________G______UCAAC...GUU-5'\n_____________|________________|\n_____________55_______________39\n |
266 -- 272 |
48 -- 54 |
-20.1848 kcal/mol |
3.44761 kcal/mol |
8.07324 kcal/mol |
265 282@LB@ | |@LB@5'-CAA...CCGAU C G UAUUC...CCA-3'@LB@ GCUGAUC U GUGAUC@LB@ ||||||| | |:||:|@LB@ CGACUAG A CGCUGG@LB@3'-UUU...AUGGC G UCAAC...GUU-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -20.1848 kcal/mol@LB@Unfolding Energy - mRNA 3.44761 kcal/mol@LB@Unfolding Energy - sRNA 8.07324 kcal/mol@LB@@LB@Position - mRNA 266 -- 281@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 48 -- 54@LB@ |
