92 |
0.006692 |
0.2343 |
b2421 |
cysM |
-10.79 |
0.009324 |
40 -- 63 |
37 -- 60 |
cysteine synthase B (O-acetylserine sulfhydrolase B) |
|
_____________39_______________________64\n_____________|________________________|\n5'-GCU...GAUGA__________CUC___CA______CUGAU...GCA-3'\n______________GGAACUUGCU___GCA__AAGCGC\n______________|:||||||||___|||__||||:|\n______________CUUUGAACGA___CGU__UUCGUG\n3'-UUU...CCCUA__________AUU___UC______AAUUU...CAA-5'\n_____________|________________________|\n_____________61_______________________36\n |
43 -- 49 |
51 -- 57 |
-24.0401 kcal/mol |
7.00094 kcal/mol |
6.24651 kcal/mol |
39 64@LB@ | |@LB@5'-GCU...GAUGA CUC CA CUGAU...GCA-3'@LB@ GGAACUUGCU GCA AAGCGC@LB@ |:|||||||| ||| ||||:|@LB@ CUUUGAACGA CGU UUCGUG@LB@3'-UUU...CCCUA AUU UC AAUUU...CAA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -24.0401 kcal/mol@LB@Unfolding Energy - mRNA 7.00094 kcal/mol@LB@Unfolding Energy - sRNA 6.24651 kcal/mol@LB@@LB@Position - mRNA 40 -- 63@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 51 -- 57@LB@ |
102 |
0.008217 |
0.2595 |
b4220 |
tamA |
-7.38 |
0.088103 |
40 -- 47 |
39 -- 46 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________39_______48\n_____________|________|\n5'-CGC...UGUAA________GUAUU...GAC-3'\n______________CAAGAGGC\n______________|||||:||\n______________GUUCUUCG\n3'-UUU...AAUUC________UGAAU...CAA-5'\n_____________|________|\n_____________47_______38\n |
41 -- 47 |
39 -- 45 |
-10.989 kcal/mol |
0.983473 kcal/mol |
2.62555 kcal/mol |
39 48@LB@ | |@LB@5'-CGC...UGUAA GUAUU...GAC-3'@LB@ CAAGAGGC@LB@ |||||:||@LB@ GUUCUUCG@LB@3'-UUU...AAUUC UGAAU...CAA-5'@LB@ | |@LB@ 47 38@LB@@LB@@LB@Energy -7.38 kcal/mol@LB@Hybridization Energy -10.989 kcal/mol@LB@Unfolding Energy - mRNA 0.983473 kcal/mol@LB@Unfolding Energy - sRNA 2.62555 kcal/mol@LB@@LB@Position - mRNA 40 -- 47@LB@Position - sRNA 39 -- 46@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 39 -- 45@LB@ |
120 |
0.01039 |
0.2788 |
b2314 |
dedD |
-6.27 |
0.167184 |
42 -- 54 |
45 -- 58 |
membrane-anchored periplasmic protein involved in septation |
|
_____________41_____________55\n_____________|______________|\n5'-UUG...AGAAC______________UUUGG...AUU-3'\n______________AAC_UGCUUGAGCA\n______________|||_|||||:||||\n______________UUG_ACGAAUUCGU\n3'-UUU...CUACU___A__________UCUUC...CAA-5'\n_____________|______________|\n_____________59_____________44\n |
47 -- 53 |
46 -- 52 |
-15.7533 kcal/mol |
3.46622 kcal/mol |
6.01947 kcal/mol |
41 55@LB@ | |@LB@5'-UUG...AGAAC UUUGG...AUU-3'@LB@ AAC UGCUUGAGCA@LB@ ||| |||||:||||@LB@ UUG ACGAAUUCGU@LB@3'-UUU...CUACU A UCUUC...CAA-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -15.7533 kcal/mol@LB@Unfolding Energy - mRNA 3.46622 kcal/mol@LB@Unfolding Energy - sRNA 6.01947 kcal/mol@LB@@LB@Position - mRNA 42 -- 54@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 46 -- 52@LB@ |
98 |
0.007325 |
0.239 |
b4171 |
miaA |
-8.40 |
0.046782 |
42 -- 58 |
5 -- 24 |
delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase |
|
_____________41___________________59\n_____________|____________________|\n5'-GAA...GUGGA____________________AGCGA...UUU-3'\n______________UUGCAC___GAAAUCUGAUG\n______________||:|||___|||||||||||\n______________AAUGUG___CUUUAGACUAC\n3'-UUU...UAAGC______GUC___________ACAA-5'\n_____________|____________________|\n_____________25___________________4\n |
52 -- 58 |
5 -- 11 |
-19.996 kcal/mol |
4.00751 kcal/mol |
7.58501 kcal/mol |
41 59@LB@ | |@LB@5'-GAA...GUGGA AGCGA...UUU-3'@LB@ UUGCAC GAAAUCUGAUG@LB@ ||:||| |||||||||||@LB@ AAUGUG CUUUAGACUAC@LB@3'-UUU...UAAGC GUC ACAA-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -19.996 kcal/mol@LB@Unfolding Energy - mRNA 4.00751 kcal/mol@LB@Unfolding Energy - sRNA 7.58501 kcal/mol@LB@@LB@Position - mRNA 42 -- 58@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 5 -- 11@LB@ |
108 |
0.009338 |
0.2693 |
b0639 |
nadD |
-9.48 |
0.023112 |
42 -- 61 |
34 -- 53 |
nicotinic acid mononucleotide adenylyltransferase NAD(P)-dependent |
|
_____________41___________________62\n_____________|____________________|\n5'-AUG...AAAUC________C___C___G___CGUCA...CGC-3'\n______________GCUUAAGU_AGA_GCA_UUA\n______________|||||||:_|||_|||_|||\n______________CGAAUUCG_UCU_CGU_AAU\n3'-UUU...UUGAA________U___U___G___UUUUU...CAA-5'\n_____________|____________________|\n_____________54___________________33\n |
42 -- 48 |
47 -- 53 |
-20.1483 kcal/mol |
4.55179 kcal/mol |
6.11529 kcal/mol |
41 62@LB@ | |@LB@5'-AUG...AAAUC C C G CGUCA...CGC-3'@LB@ GCUUAAGU AGA GCA UUA@LB@ |||||||: ||| ||| |||@LB@ CGAAUUCG UCU CGU AAU@LB@3'-UUU...UUGAA U U G UUUUU...CAA-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -20.1483 kcal/mol@LB@Unfolding Energy - mRNA 4.55179 kcal/mol@LB@Unfolding Energy - sRNA 6.11529 kcal/mol@LB@@LB@Position - mRNA 42 -- 61@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 47 -- 53@LB@ |
33 |
0.001071 |
0.1045 |
b2058 |
wcaB |
-10.41 |
0.012241 |
46 -- 64 |
25 -- 42 |
putative acyl transferase |
|
_____________45__________________65\n_____________|___________________|\n5'-ACC...ACCGC______AA___C_______ACCGC...AGA-3'\n______________AAGCAC__AGA_AAAUUCG\n______________||||||__|:|_|||||||\n______________UUCGUG__UUU_UUUAAGC\n3'-UUU...CGUUC______AA___________AAUGU...CAA-5'\n_____________|___________________|\n_____________43__________________24\n |
58 -- 64 |
25 -- 31 |
-12.8013 kcal/mol |
0.745291 kcal/mol |
1.64855 kcal/mol |
45 65@LB@ | |@LB@5'-ACC...ACCGC AA C ACCGC...AGA-3'@LB@ AAGCAC AGA AAAUUCG@LB@ |||||| |:| |||||||@LB@ UUCGUG UUU UUUAAGC@LB@3'-UUU...CGUUC AA AAUGU...CAA-5'@LB@ | |@LB@ 43 24@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -12.8013 kcal/mol@LB@Unfolding Energy - mRNA 0.745291 kcal/mol@LB@Unfolding Energy - sRNA 1.64855 kcal/mol@LB@@LB@Position - mRNA 46 -- 64@LB@Position - sRNA 25 -- 42@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 25 -- 31@LB@ |
119 |
0.01022 |
0.2766 |
b0123 |
cueO |
-7.29 |
0.093095 |
47 -- 59 |
29 -- 41 |
multicopper oxidase (laccase) |
|
_____________46____________60\n_____________|_____________|\n5'-CUG...UACCA__G__________GAUAA...CGU-3'\n______________GG_GCUUAAAGAA\n______________:|_:||||||:||\n______________UC_UGAAUUUUUU\n3'-UUU...GUUCU__G__________AAGCA...CAA-5'\n_____________|_____________|\n_____________42____________28\n |
53 -- 59 |
29 -- 35 |
-11.0144 kcal/mol |
2.10364 kcal/mol |
1.62306 kcal/mol |
46 60@LB@ | |@LB@5'-CUG...UACCA G GAUAA...CGU-3'@LB@ GG GCUUAAAGAA@LB@ :| :||||||:||@LB@ UC UGAAUUUUUU@LB@3'-UUU...GUUCU G AAGCA...CAA-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -7.29 kcal/mol@LB@Hybridization Energy -11.0144 kcal/mol@LB@Unfolding Energy - mRNA 2.10364 kcal/mol@LB@Unfolding Energy - sRNA 1.62306 kcal/mol@LB@@LB@Position - mRNA 47 -- 59@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 29 -- 35@LB@ |
200 |
0.02417 |
0.3893 |
b1747 |
astA |
-6.36 |
0.159223 |
49 -- 56 |
39 -- 46 |
arginine succinyltransferase |
|
_____________48_______57\n_____________|________|\n5'-GGC...UCUCU________GGCGA...AAG-3'\n______________CAGGAAGC\n______________||:|||||\n______________GUUCUUCG\n3'-UUU...AAUUC________UGAAU...CAA-5'\n_____________|________|\n_____________47_______38\n |
50 -- 56 |
39 -- 45 |
-10.5455 kcal/mol |
1.56403 kcal/mol |
2.62555 kcal/mol |
48 57@LB@ | |@LB@5'-GGC...UCUCU GGCGA...AAG-3'@LB@ CAGGAAGC@LB@ ||:|||||@LB@ GUUCUUCG@LB@3'-UUU...AAUUC UGAAU...CAA-5'@LB@ | |@LB@ 47 38@LB@@LB@@LB@Energy -6.36 kcal/mol@LB@Hybridization Energy -10.5455 kcal/mol@LB@Unfolding Energy - mRNA 1.56403 kcal/mol@LB@Unfolding Energy - sRNA 2.62555 kcal/mol@LB@@LB@Position - mRNA 49 -- 56@LB@Position - sRNA 39 -- 46@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 39 -- 45@LB@ |
24 |
0.000694 |
0.09021 |
b2531 |
iscR |
-7.21 |
0.097486 |
53 -- 65 |
27 -- 41 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________52______________66\n_____________|_______________|\n5'-AUG...AAAAU_______________AAAUA...AAC-3'\n______________GGCACU__GAAGGUU\n______________:|||||__:||::||\n______________UCGUGA__UUUUUAA\n3'-UUU...GUUCU______AU_______GCAAU...CAA-5'\n_____________|_______________|\n_____________42______________26\n |
59 -- 65 |
27 -- 33 |
-10.1429 kcal/mol |
1.29 kcal/mol |
1.6427 kcal/mol |
52 66@LB@ | |@LB@5'-AUG...AAAAU AAAUA...AAC-3'@LB@ GGCACU GAAGGUU@LB@ :||||| :||::||@LB@ UCGUGA UUUUUAA@LB@3'-UUU...GUUCU AU GCAAU...CAA-5'@LB@ | |@LB@ 42 26@LB@@LB@@LB@Energy -7.21 kcal/mol@LB@Hybridization Energy -10.1429 kcal/mol@LB@Unfolding Energy - mRNA 1.29 kcal/mol@LB@Unfolding Energy - sRNA 1.6427 kcal/mol@LB@@LB@Position - mRNA 53 -- 65@LB@Position - sRNA 27 -- 41@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 27 -- 33@LB@ |
58 |
0.002968 |
0.1645 |
b0421 |
ispA |
-9.70 |
0.019970 |
54 -- 76 |
25 -- 47 |
geranyltranstransferase |
|
_____________53______________________77\n_____________|_______________________|\n5'-CUG...CCGCU_G__________GAAC_______AACGC...UCG-3'\n______________G_AAGAGGCGCU____GAGUUCG\n______________|_||||:||:||____:|:||||\n______________C_UUCUUCGUGA____UUUAAGC\n3'-UUU...GAAUU_G__________AUUU_______AAUGU...CAA-5'\n_____________|_______________________|\n_____________48______________________24\n |
70 -- 76 |
25 -- 31 |
-22.3845 kcal/mol |
6.43631 kcal/mol |
6.25056 kcal/mol |
53 77@LB@ | |@LB@5'-CUG...CCGCU G GAAC AACGC...UCG-3'@LB@ G AAGAGGCGCU GAGUUCG@LB@ | ||||:||:|| :|:||||@LB@ C UUCUUCGUGA UUUAAGC@LB@3'-UUU...GAAUU G AUUU AAUGU...CAA-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -22.3845 kcal/mol@LB@Unfolding Energy - mRNA 6.43631 kcal/mol@LB@Unfolding Energy - sRNA 6.25056 kcal/mol@LB@@LB@Position - mRNA 54 -- 76@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 25 -- 31@LB@ |