| 195 |
0.01134 |
0.1946 |
b0633 |
rlpA |
-8.12 |
0.339483 |
43 -- 55 |
25 -- 37 |
septal ring protein suppressor of prc minor lipoprotein |
|
_____________42____________56\n_____________|_____________|\n5'-CGG...AAUAU_________A___GGUAU...CUG-3'\n______________UGGUAUGGU_AGC\n______________|||||::|:_|||\n______________ACCAUGUCG_UCG\n3'-UUU...CAAGG_________A___UAAAA...UCG-5'\n_____________|_____________|\n_____________38____________24\n |
45 -- 51 |
29 -- 35 |
-15.087 kcal/mol |
4.33932 kcal/mol |
2.62824 kcal/mol |
42 56@LB@ | |@LB@5'-CGG...AAUAU A GGUAU...CUG-3'@LB@ UGGUAUGGU AGC@LB@ |||||::|: |||@LB@ ACCAUGUCG UCG@LB@3'-UUU...CAAGG A UAAAA...UCG-5'@LB@ | |@LB@ 38 24@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -15.087 kcal/mol@LB@Unfolding Energy - mRNA 4.33932 kcal/mol@LB@Unfolding Energy - sRNA 2.62824 kcal/mol@LB@@LB@Position - mRNA 43 -- 55@LB@Position - sRNA 25 -- 37@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 159 |
0.008045 |
0.1694 |
b1780 |
yeaD |
-12.23 |
0.058242 |
44 -- 57 |
32 -- 44 |
D-hexose-6-phosphate epimerase-like protein |
|
_____________43_____________58\n_____________|______________|\n5'-GAU...GAAAC____A_________GACAA...AUC-3'\n______________UGGU_UCCUGGUAC\n______________||||_|||||||||\n______________ACCA_AGGACCAUG\n3'-UUU...CCUCC______________UCGAU...UCG-5'\n_____________|______________|\n_____________45_____________31\n |
51 -- 57 |
32 -- 38 |
-20.6656 kcal/mol |
5.17692 kcal/mol |
3.25604 kcal/mol |
43 58@LB@ | |@LB@5'-GAU...GAAAC A GACAA...AUC-3'@LB@ UGGU UCCUGGUAC@LB@ |||| |||||||||@LB@ ACCA AGGACCAUG@LB@3'-UUU...CCUCC UCGAU...UCG-5'@LB@ | |@LB@ 45 31@LB@@LB@@LB@Energy -12.23 kcal/mol@LB@Hybridization Energy -20.6656 kcal/mol@LB@Unfolding Energy - mRNA 5.17692 kcal/mol@LB@Unfolding Energy - sRNA 3.25604 kcal/mol@LB@@LB@Position - mRNA 44 -- 57@LB@Position - sRNA 32 -- 44@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 103 |
0.00377 |
0.123 |
b2922 |
yggE |
-10.91 |
0.111523 |
45 -- 69 |
24 -- 45 |
oxidative stress defense protein |
|
_____________44________________________70\n_____________|_________________________|\n5'-GCA...GUUAU_______AU__CCU___________AGAGA...CCG-3'\n______________GUGGUUU__UG___UGCAGCUGGCG\n______________||||||:__||___|:|||||:||:\n______________CACCAAG__AC___AUGUCGAUCGU\n3'-UUU...UCCUC_______G___C_____________AAAAU...UCG-5'\n_____________|_________________________|\n_____________46________________________23\n |
63 -- 69 |
24 -- 30 |
-26.0515 kcal/mol |
10.579 kcal/mol |
4.55794 kcal/mol |
44 70@LB@ | |@LB@5'-GCA...GUUAU AU CCU AGAGA...CCG-3'@LB@ GUGGUUU UG UGCAGCUGGCG@LB@ ||||||: || |:|||||:||:@LB@ CACCAAG AC AUGUCGAUCGU@LB@3'-UUU...UCCUC G C AAAAU...UCG-5'@LB@ | |@LB@ 46 23@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -26.0515 kcal/mol@LB@Unfolding Energy - mRNA 10.579 kcal/mol@LB@Unfolding Energy - sRNA 4.55794 kcal/mol@LB@@LB@Position - mRNA 45 -- 69@LB@Position - sRNA 24 -- 45@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 182 |
0.01043 |
0.1919 |
b1235 |
rssB |
-12.59 |
0.048266 |
47 -- 57 |
25 -- 36 |
PcnB-degradosome interaction factor; response regulator |
|
_____________46___________58\n_____________|____________|\n5'-AAU...CGGCC____________AGUGG...CAA-3'\n______________GG_ACAGCUGGC\n______________||_||||||:||\n______________CC_UGUCGAUCG\n3'-UUU...AAGGA__A_________UAAAA...UCG-5'\n_____________|____________|\n_____________37___________24\n |
51 -- 57 |
25 -- 31 |
-17.7308 kcal/mol |
3.71782 kcal/mol |
1.42738 kcal/mol |
46 58@LB@ | |@LB@5'-AAU...CGGCC AGUGG...CAA-3'@LB@ GG ACAGCUGGC@LB@ || ||||||:||@LB@ CC UGUCGAUCG@LB@3'-UUU...AAGGA A UAAAA...UCG-5'@LB@ | |@LB@ 37 24@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -17.7308 kcal/mol@LB@Unfolding Energy - mRNA 3.71782 kcal/mol@LB@Unfolding Energy - sRNA 1.42738 kcal/mol@LB@@LB@Position - mRNA 47 -- 57@LB@Position - sRNA 25 -- 36@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 42 |
0.000828 |
0.06626 |
b2129 |
yehX |
-13.83 |
0.023625 |
55 -- 85 |
15 -- 47 |
putative ABC transporter ATPase |
|
_____________54________________________________86\n_____________|_________________________________|\n5'-GGU...GGCGC___C___________________UUUCCAG___CUGCU...UUG-3'\n______________AGG_GGUU_UUGGUGC_GCUGGU_______GGG\n______________|||_||||_:||||:|_|||:|:_______|||\n______________UCC_CCAA_GACCAUG_CGAUCG_______CCC\n3'-UUU...AUUCC___A____G_______U______UAAAAUA___AAUAC...UCG-5'\n_____________|_________________________________|\n_____________48________________________________14\n |
63 -- 69 |
32 -- 38 |
-32.2293 kcal/mol |
13.8239 kcal/mol |
4.57348 kcal/mol |
54 86@LB@ | |@LB@5'-GGU...GGCGC C UUUCCAG CUGCU...UUG-3'@LB@ AGG GGUU UUGGUGC GCUGGU GGG@LB@ ||| |||| :||||:| |||:|: |||@LB@ UCC CCAA GACCAUG CGAUCG CCC@LB@3'-UUU...AUUCC A G U UAAAAUA AAUAC...UCG-5'@LB@ | |@LB@ 48 14@LB@@LB@@LB@Energy -13.83 kcal/mol@LB@Hybridization Energy -32.2293 kcal/mol@LB@Unfolding Energy - mRNA 13.8239 kcal/mol@LB@Unfolding Energy - sRNA 4.57348 kcal/mol@LB@@LB@Position - mRNA 55 -- 85@LB@Position - sRNA 15 -- 47@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 196 |
0.01135 |
0.1946 |
b1515 |
lsrD |
-9.63 |
0.194390 |
56 -- 86 |
16 -- 44 |
autoinducer 2 import system permease protein |
|
_____________55______________________________87\n_____________|_______________________________|\n5'-AGC...GGGUC_______GC___CGGU__________G____ACGCC...AUA-3'\n______________UGGUUCU__UGG____GCUGGUGUUU_AUGG\n______________||||||:__|||____|||:|::|||_||||\n______________ACCAAGG__ACC____CGAUCGUAAA_UACC\n3'-UUU...CCUCC____________AUGU__________A____CAAUA...UCG-5'\n_____________|_______________________________|\n_____________45______________________________15\n |
56 -- 62 |
38 -- 44 |
-28.9595 kcal/mol |
14.7558 kcal/mol |
4.57147 kcal/mol |
55 87@LB@ | |@LB@5'-AGC...GGGUC GC CGGU G ACGCC...AUA-3'@LB@ UGGUUCU UGG GCUGGUGUUU AUGG@LB@ ||||||: ||| |||:|::||| ||||@LB@ ACCAAGG ACC CGAUCGUAAA UACC@LB@3'-UUU...CCUCC AUGU A CAAUA...UCG-5'@LB@ | |@LB@ 45 15@LB@@LB@@LB@Energy -9.63 kcal/mol@LB@Hybridization Energy -28.9595 kcal/mol@LB@Unfolding Energy - mRNA 14.7558 kcal/mol@LB@Unfolding Energy - sRNA 4.57147 kcal/mol@LB@@LB@Position - mRNA 56 -- 86@LB@Position - sRNA 16 -- 44@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 96 |
0.003358 |
0.117 |
b3367 |
nirC |
-13.97 |
0.021706 |
56 -- 81 |
6 -- 37 |
nitrite transporter |
|
_____________55_________________________________82\n_____________|__________________________________|\n5'-AUG...CGGCG___________C______________A_______AACGG...UGG-3'\n______________UGGUGCAGCUG_GC________GGUU_AUGUUUU\n______________||||:|||||:_||________||||_|||||||\n______________ACCAUGUCGAU_CG________CCAA_UACAAAA\n3'-UUU...CAAGG______________UAAAAUAC____________AGUCG-5'\n_____________|__________________________________|\n_____________38_________________________________5\n |
75 -- 81 |
6 -- 12 |
-26.6239 kcal/mol |
9.95316 kcal/mol |
2.70019 kcal/mol |
55 82@LB@ | |@LB@5'-AUG...CGGCG C A AACGG...UGG-3'@LB@ UGGUGCAGCUG GC GGUU AUGUUUU@LB@ ||||:|||||: || |||| |||||||@LB@ ACCAUGUCGAU CG CCAA UACAAAA@LB@3'-UUU...CAAGG UAAAAUAC AGUCG-5'@LB@ | |@LB@ 38 5@LB@@LB@@LB@Energy -13.97 kcal/mol@LB@Hybridization Energy -26.6239 kcal/mol@LB@Unfolding Energy - mRNA 9.95316 kcal/mol@LB@Unfolding Energy - sRNA 2.70019 kcal/mol@LB@@LB@Position - mRNA 56 -- 81@LB@Position - sRNA 6 -- 37@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 53 |
0.001234 |
0.07744 |
b0884 |
infA |
-13.12 |
0.035785 |
57 -- 86 |
2 -- 40 |
translation initiation factor IF-1 |
|
_____________56_______________________________________87\n_____________|________________________________________|\n5'-UUU...UGCGC____________U____CG_____________________AGUAA...CUG-3'\n______________UUUUGGUGCGGC_UAGC___________UGUG_UUUUCGG\n______________|::||||:|:||_||||___________|:||_|||||:|\n______________AGGACCAUGUCG_AUCG___________AUAC_AAAAGUC\n3'-UUU...CACCA_________________UAAAAUACCCA____A_______G-5'\n_____________|________________________________________|\n_____________41_______________________________________1\n |
80 -- 86 |
2 -- 8 |
-28.8253 kcal/mol |
11.0921 kcal/mol |
4.60818 kcal/mol |
56 87@LB@ | |@LB@5'-UUU...UGCGC U CG AGUAA...CUG-3'@LB@ UUUUGGUGCGGC UAGC UGUG UUUUCGG@LB@ |::||||:|:|| |||| |:|| |||||:|@LB@ AGGACCAUGUCG AUCG AUAC AAAAGUC@LB@3'-UUU...CACCA UAAAAUACCCA A G-5'@LB@ | |@LB@ 41 1@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -28.8253 kcal/mol@LB@Unfolding Energy - mRNA 11.0921 kcal/mol@LB@Unfolding Energy - sRNA 4.60818 kcal/mol@LB@@LB@Position - mRNA 57 -- 86@LB@Position - sRNA 2 -- 40@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 131 |
0.005571 |
0.1429 |
b3102 |
yqjG |
-9.67 |
0.191738 |
57 -- 77 |
24 -- 46 |
putative S-transferase |
|
_____________56_______________________78\n_____________|________________________|\n5'-GCA...UUUCU__C__A______CU__________AUUAC...GGC-3'\n______________GG_GG_UUCCUG_____GCUGGCA\n______________||_||_||||||_____|||:|||\n______________CC_CC_AAGGAC_____CGAUCGU\n3'-UUU...UUCCU__A_________CAUGU_______AAAAU...UCG-5'\n_____________|________________________|\n_____________47_______________________23\n |
71 -- 77 |
24 -- 30 |
-24.338 kcal/mol |
10.1138 kcal/mol |
4.55813 kcal/mol |
56 78@LB@ | |@LB@5'-GCA...UUUCU C A CU AUUAC...GGC-3'@LB@ GG GG UUCCUG GCUGGCA@LB@ || || |||||| |||:|||@LB@ CC CC AAGGAC CGAUCGU@LB@3'-UUU...UUCCU A CAUGU AAAAU...UCG-5'@LB@ | |@LB@ 47 23@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -24.338 kcal/mol@LB@Unfolding Energy - mRNA 10.1138 kcal/mol@LB@Unfolding Energy - sRNA 4.55813 kcal/mol@LB@@LB@Position - mRNA 57 -- 77@LB@Position - sRNA 24 -- 46@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 155 |
0.007835 |
0.1694 |
b2239 |
glpQ |
-10.90 |
0.112133 |
59 -- 106 |
1 -- 45 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________58________________________________________________107\n_____________|_________________________________________________|\n5'-CGG...ACACC____AC_____C__CUG__A_____GC_______UA____A__GG____AGCAU...UCA-3'\n______________GUGG__UUCUU_GG___GG_UGGCG__UUUAUGG___AUG_UU__CGGC\n______________||||__|||:|_||___:|_|:||:__|||||||___|||_||__|:||\n______________CACC__AAGGA_CC___UC_AUCGU__AAAUACC___UAC_AA__GUCG\n3'-UUU...UCCUC______________AUG__G_____A________CAA___A__AA____-5'\n_____________|________________________________________________|\n_____________46_______________________________________________1\n |
86 -- 92 |
16 -- 22 |
-29.5358 kcal/mol |
14.0238 kcal/mol |
4.60935 kcal/mol |
58 107@LB@ | |@LB@5'-CGG...ACACC AC C CUG A GC UA A GG AGCAU...UCA-3'@LB@ GUGG UUCUU GG GG UGGCG UUUAUGG AUG UU CGGC@LB@ |||| |||:| || :| |:||: ||||||| ||| || |:||@LB@ CACC AAGGA CC UC AUCGU AAAUACC UAC AA GUCG@LB@3'-UUU...UCCUC AUG G A CAA A AA -5'@LB@ | |@LB@ 46 1@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -29.5358 kcal/mol@LB@Unfolding Energy - mRNA 14.0238 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 59 -- 106@LB@Position - sRNA 1 -- 45@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 16 -- 22@LB@ |
