151 |
0.0157 |
0.3349 |
b0586 |
entF |
-8.26 |
0.051334 |
189 -- 199 |
37 -- 47 |
enterobactin synthase multienzyme complex component ATP-dependent |
|
_____________188_________200\n_____________|___________|\n5'-CCC...CAGUU___________AAUGA...UUG-3'\n______________GCAGGAGGCAC\n______________|||:||:||||\n______________CGUUCUUCGUG\n3'-UUU...GAAUU___________AAUUU...CAA-5'\n_____________|___________|\n_____________48__________36\n |
193 -- 199 |
37 -- 43 |
-17.6877 kcal/mol |
4.1913 kcal/mol |
5.23944 kcal/mol |
188 200@LB@ | |@LB@5'-CCC...CAGUU AAUGA...UUG-3'@LB@ GCAGGAGGCAC@LB@ |||:||:||||@LB@ CGUUCUUCGUG@LB@3'-UUU...GAAUU AAUUU...CAA-5'@LB@ | |@LB@ 48 36@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -17.6877 kcal/mol@LB@Unfolding Energy - mRNA 4.1913 kcal/mol@LB@Unfolding Energy - sRNA 5.23944 kcal/mol@LB@@LB@Position - mRNA 189 -- 199@LB@Position - sRNA 37 -- 47@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 37 -- 43@LB@ |
16 |
0.0003675 |
0.07398 |
b0566 |
envY |
-6.67 |
0.133095 |
149 -- 159 |
37 -- 47 |
porin thermoregulatory transcriptional activator |
b1499 b0564 b3515 b4116 b3516 |
_____________148_________160\n_____________|___________|\n5'-GGC...CUCAU___________AGAUC...ACU-3'\n______________GCAGGAAGCAU\n______________|||:||||||:\n______________CGUUCUUCGUG\n3'-UUU...GAAUU___________AAUUU...CAA-5'\n_____________|___________|\n_____________48__________36\n |
153 -- 159 |
37 -- 43 |
-16.6622 kcal/mol |
4.74809 kcal/mol |
5.23944 kcal/mol |
148 160@LB@ | |@LB@5'-GGC...CUCAU AGAUC...ACU-3'@LB@ GCAGGAAGCAU@LB@ |||:||||||:@LB@ CGUUCUUCGUG@LB@3'-UUU...GAAUU AAUUU...CAA-5'@LB@ | |@LB@ 48 36@LB@@LB@@LB@Energy -6.67 kcal/mol@LB@Hybridization Energy -16.6622 kcal/mol@LB@Unfolding Energy - mRNA 4.74809 kcal/mol@LB@Unfolding Energy - sRNA 5.23944 kcal/mol@LB@@LB@Position - mRNA 149 -- 159@LB@Position - sRNA 37 -- 47@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 37 -- 43@LB@ |
40 |
0.001639 |
0.1292 |
b0156 |
erpA |
-9.82 |
0.018424 |
105 -- 133 |
14 -- 48 |
iron-sulfur cluster insertion protein |
|
_____________104_________________________________134\n_____________|___________________________________|\n5'-UAG...CAGCC________________________AA_________UAUUA...UAC-3'\n______________AGCGAGAA_UACUUGAA_____CG__AUACCAGGG\n______________|||:||||_:||||:||_____||__|:||||||:\n______________UCGUUCUU_GUGAAUUU_____GC__UGUGGUCCU\n3'-UUU...CGAAU________C________UUUAA__AA_________UUAGA...CAA-5'\n_____________|___________________________________|\n_____________49__________________________________13\n |
127 -- 133 |
14 -- 20 |
-29.1703 kcal/mol |
5.55319 kcal/mol |
13.801 kcal/mol |
104 134@LB@ | |@LB@5'-UAG...CAGCC AA UAUUA...UAC-3'@LB@ AGCGAGAA UACUUGAA CG AUACCAGGG@LB@ |||:|||| :||||:|| || |:||||||:@LB@ UCGUUCUU GUGAAUUU GC UGUGGUCCU@LB@3'-UUU...CGAAU C UUUAA AA UUAGA...CAA-5'@LB@ | |@LB@ 49 13@LB@@LB@@LB@Energy -9.82 kcal/mol@LB@Hybridization Energy -29.1703 kcal/mol@LB@Unfolding Energy - mRNA 5.55319 kcal/mol@LB@Unfolding Energy - sRNA 13.801 kcal/mol@LB@@LB@Position - mRNA 105 -- 133@LB@Position - sRNA 14 -- 48@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 14 -- 20@LB@ |
133 |
0.0127 |
0.3077 |
b2452 |
eutH |
-4.80 |
0.352106 |
186 -- 194 |
38 -- 46 |
ethanolamine transporter |
|
_____________185_______195\n_____________|_________|\n5'-UUG...ACUAA_________AAGGC...UCC-3'\n______________CAGGGAGUA\n______________||:|:||:|\n______________GUUCUUCGU\n3'-UUU...AAUUC_________GAAUU...CAA-5'\n_____________|_________|\n_____________47________37\n |
188 -- 194 |
38 -- 44 |
-8.62764 kcal/mol |
1.2009 kcal/mol |
2.62609 kcal/mol |
185 195@LB@ | |@LB@5'-UUG...ACUAA AAGGC...UCC-3'@LB@ CAGGGAGUA@LB@ ||:|:||:|@LB@ GUUCUUCGU@LB@3'-UUU...AAUUC GAAUU...CAA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -4.80 kcal/mol@LB@Hybridization Energy -8.62764 kcal/mol@LB@Unfolding Energy - mRNA 1.2009 kcal/mol@LB@Unfolding Energy - sRNA 2.62609 kcal/mol@LB@@LB@Position - mRNA 186 -- 194@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 38 -- 44@LB@ |
83 |
0.005546 |
0.2146 |
b0221 |
fadE |
-11.24 |
0.006780 |
20 -- 32 |
37 -- 49 |
acyl coenzyme A dehydrogenase |
|
_____________19____________33\n_____________|_____________|\n5'-GUG...GCCAA_____________GGGCA...GGA-3'\n______________AAGCGAGAAGUAC\n______________||||:|||||:||\n______________UUCGUUCUUCGUG\n3'-UUU...ACGAA_____________AAUUU...CAA-5'\n_____________|_____________|\n_____________50____________36\n |
26 -- 32 |
37 -- 43 |
-19.9972 kcal/mol |
2.7283 kcal/mol |
6.03369 kcal/mol |
19 33@LB@ | |@LB@5'-GUG...GCCAA GGGCA...GGA-3'@LB@ AAGCGAGAAGUAC@LB@ ||||:|||||:||@LB@ UUCGUUCUUCGUG@LB@3'-UUU...ACGAA AAUUU...CAA-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -11.24 kcal/mol@LB@Hybridization Energy -19.9972 kcal/mol@LB@Unfolding Energy - mRNA 2.7283 kcal/mol@LB@Unfolding Energy - sRNA 6.03369 kcal/mol@LB@@LB@Position - mRNA 20 -- 32@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 37 -- 43@LB@ |
49 |
0.002267 |
0.1465 |
b0592 |
fepB |
-6.35 |
0.159662 |
143 -- 160 |
24 -- 40 |
ferrienterobactin ABC transporter periplasmic binding protein |
|
_____________142________________161\n_____________|__________________|\n5'-AUA...AUUGU______UGUC________CAUUA...UUA-3'\n______________GCGCUU____GAAUUUGU\n______________||:|||____:||||:||\n______________CGUGAA____UUUAAGCA\n3'-UUU...UUCUU______UUU_________AUGUG...CAA-5'\n_____________|__________________|\n_____________41_________________23\n |
154 -- 160 |
24 -- 30 |
-12.773 kcal/mol |
4.77335 kcal/mol |
1.64869 kcal/mol |
142 161@LB@ | |@LB@5'-AUA...AUUGU UGUC CAUUA...UUA-3'@LB@ GCGCUU GAAUUUGU@LB@ ||:||| :||||:||@LB@ CGUGAA UUUAAGCA@LB@3'-UUU...UUCUU UUU AUGUG...CAA-5'@LB@ | |@LB@ 41 23@LB@@LB@@LB@Energy -6.35 kcal/mol@LB@Hybridization Energy -12.773 kcal/mol@LB@Unfolding Energy - mRNA 4.77335 kcal/mol@LB@Unfolding Energy - sRNA 1.64869 kcal/mol@LB@@LB@Position - mRNA 143 -- 160@LB@Position - sRNA 24 -- 40@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 24 -- 30@LB@ |
9 |
7.531e-05 |
0.02695 |
b0491 |
fetB |
-11.86 |
0.004271 |
187 -- 209 |
25 -- 47 |
iron export ABC transporter permease; peroxide resistance protein |
|
_____________186_____________________210\n_____________|_______________________|\n5'-GCC...GAAAU___________GCUAU___C___CAUAA...AGA-3'\n______________GCAGGAAGCAC_____GAA_UCG\n______________|||:|||||||_____:||_|||\n______________CGUUCUUCGUG_____UUU_AGC\n3'-UUU...GAAUU___________AAUUU___A___AAUGU...CAA-5'\n_____________|_______________________|\n_____________48______________________24\n |
191 -- 197 |
37 -- 43 |
-22.8314 kcal/mol |
4.71887 kcal/mol |
6.25056 kcal/mol |
186 210@LB@ | |@LB@5'-GCC...GAAAU GCUAU C CAUAA...AGA-3'@LB@ GCAGGAAGCAC GAA UCG@LB@ |||:||||||| :|| |||@LB@ CGUUCUUCGUG UUU AGC@LB@3'-UUU...GAAUU AAUUU A AAUGU...CAA-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -22.8314 kcal/mol@LB@Unfolding Energy - mRNA 4.71887 kcal/mol@LB@Unfolding Energy - sRNA 6.25056 kcal/mol@LB@@LB@Position - mRNA 187 -- 209@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 37 -- 43@LB@ |
81 |
0.005437 |
0.2146 |
b1073 |
flgB |
-5.23 |
0.286610 |
229 -- 247 |
36 -- 53 |
flagellar component of cell-proximal portion of basal-body rod |
|
_____________228_________________248\n_____________|___________________|\n5'-UGA...CUUAC____UCAA___________CAAUC...CCG-3'\n______________GUUU____CAAGAGGCGCU\n______________|:||____|||||:||:||\n______________CGAA____GUUCUUCGUGA\n3'-UUU...UUGAA____UUC____________AUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________35\n |
241 -- 247 |
36 -- 42 |
-18.0666 kcal/mol |
6.73003 kcal/mol |
6.10238 kcal/mol |
228 248@LB@ | |@LB@5'-UGA...CUUAC UCAA CAAUC...CCG-3'@LB@ GUUU CAAGAGGCGCU@LB@ |:|| |||||:||:||@LB@ CGAA GUUCUUCGUGA@LB@3'-UUU...UUGAA UUC AUUUU...CAA-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -5.23 kcal/mol@LB@Hybridization Energy -18.0666 kcal/mol@LB@Unfolding Energy - mRNA 6.73003 kcal/mol@LB@Unfolding Energy - sRNA 6.10238 kcal/mol@LB@@LB@Position - mRNA 229 -- 247@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 36 -- 42@LB@ |
196 |
0.02353 |
0.3864 |
b1948 |
fliP |
-9.61 |
0.021211 |
171 -- 185 |
45 -- 59 |
flagellar biosynthesis protein |
|
_____________170_____________186\n_____________|_______________|\n5'-AUU...AUGAA_______________UAGCG...GCG-3'\n______________AAAUUUGCUUAAGCG\n______________|||:||||||||||:\n______________UUUGAACGAAUUCGU\n3'-UUU...CCUAC_______________UCUUC...CAA-5'\n_____________|_______________|\n_____________60______________44\n |
178 -- 184 |
46 -- 52 |
-18.3894 kcal/mol |
2.75936 kcal/mol |
6.02152 kcal/mol |
170 186@LB@ | |@LB@5'-AUU...AUGAA UAGCG...GCG-3'@LB@ AAAUUUGCUUAAGCG@LB@ |||:||||||||||:@LB@ UUUGAACGAAUUCGU@LB@3'-UUU...CCUAC UCUUC...CAA-5'@LB@ | |@LB@ 60 44@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -18.3894 kcal/mol@LB@Unfolding Energy - mRNA 2.75936 kcal/mol@LB@Unfolding Energy - sRNA 6.02152 kcal/mol@LB@@LB@Position - mRNA 171 -- 185@LB@Position - sRNA 45 -- 59@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 46 -- 52@LB@ |
125 |
0.01132 |
0.2916 |
b4152 |
frdC |
-8.74 |
0.037729 |
137 -- 154 |
25 -- 41 |
fumarate reductase (anaerobic) membrane anchor subunit |
|
_____________136________________155\n_____________|__________________|\n5'-AGA...AGCAG____AAG___________AAAGA...CGG-3'\n______________GGCA___UAGAAAGUUCG\n______________:|||___||:|||:||||\n______________UCGU___AUUUUUUAAGC\n3'-UUU...GUUCU____GA____________AAUGU...CAA-5'\n_____________|__________________|\n_____________42_________________24\n |
148 -- 154 |
25 -- 31 |
-13.3883 kcal/mol |
3.00162 kcal/mol |
1.64839 kcal/mol |
136 155@LB@ | |@LB@5'-AGA...AGCAG AAG AAAGA...CGG-3'@LB@ GGCA UAGAAAGUUCG@LB@ :||| ||:|||:||||@LB@ UCGU AUUUUUUAAGC@LB@3'-UUU...GUUCU GA AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -13.3883 kcal/mol@LB@Unfolding Energy - mRNA 3.00162 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 137 -- 154@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 25 -- 31@LB@ |