| 15 |
0.000269 |
0.06194 |
stm3630 |
dppA |
-21.81 |
0.008578 |
158 -- 199 |
51 -- 92 |
ABC transporter substrate-binding protein |
|
_____________157_____________________________________200\n_____________|_______________________________________|\n5'-AUU...AGCCU______AGG___A__________________________AGAAG...AUU-3'\n______________UUGCAA___GCA_AACAACAU_ACAUCACAAUUG_GAGC\n______________||||||___:||_|||||||:_|||||||||::|_:|||\n______________AACGUU___UGU_UUGUUGUG_UGUAGUGUUGGC_UUCG\n3'-UUU...UGGUU____________G________U____________A____GUUUU...UCA-5'\n_____________|_______________________________________|\n_____________93______________________________________50\n |
183 -- 189 |
63 -- 69 |
-36.2763 kcal/mol |
6.81868 kcal/mol |
11.5217 kcal/mol |
157 200@LB@ | |@LB@5'-AUU...AGCCU AGG A AGAAG...AUU-3'@LB@ UUGCAA GCA AACAACAU ACAUCACAAUUG GAGC@LB@ |||||| :|| |||||||: |||||||||::| :|||@LB@ AACGUU UGU UUGUUGUG UGUAGUGUUGGC UUCG@LB@3'-UUU...UGGUU G U A GUUUU...UCA-5'@LB@ | |@LB@ 93 50@LB@@LB@@LB@Energy -21.81 kcal/mol@LB@Hybridization Energy -36.2763 kcal/mol@LB@Unfolding Energy - mRNA 6.81868 kcal/mol@LB@Unfolding Energy - sRNA 11.5217 kcal/mol@LB@@LB@Position - mRNA 158 -- 199@LB@Position - sRNA 51 -- 92@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 133 |
0.006689 |
0.1774 |
stm0831 |
dps |
-13.05 |
0.236755 |
141 -- 176 |
159 -- 184 |
DNA starvation/stationary phase protection protein Dps |
|
_____________140________________________177\n_____________|__________________________|\n5'-CAU...UUACC___CA_______AACU__________AAUUG...UUA-3'\n______________CAC__AACAGCA____CGUC_UAACC\n______________|||__||||:||____|:||_:||||\n______________GUG__UUGUUGU____GUAG_GUUGG\n3'-UUU...CGUUU____________GUU_____U_____CAUUC...UCA-5'\n_____________|__________________________|\n_____________185________________________158\n |
37 -- 43 |
76 -- 82 |
-18.4678 kcal/mol |
1.39739 kcal/mol |
8.25195 kcal/mol |
140 177@LB@ | |@LB@5'-CAU...UUACC CA AACU AAUUG...UUA-3'@LB@ CAC AACAGCA CGUC UAACC@LB@ ||| ||||:|| |:|| :||||@LB@ GUG UUGUUGU GUAG GUUGG@LB@3'-UUU...CGUUU GUU U CAUUC...UCA-5'@LB@ | |@LB@ 185 158@LB@@LB@@LB@Energy -13.05 kcal/mol@LB@Hybridization Energy -18.4678 kcal/mol@LB@Unfolding Energy - mRNA 1.39739 kcal/mol@LB@Unfolding Energy - sRNA 8.25195 kcal/mol@LB@@LB@Position - mRNA 141 -- 176@LB@Position - sRNA 159 -- 184@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 46 |
0.001637 |
0.1267 |
stm2313 |
elaC |
-17.21 |
0.051329 |
250 -- 300 |
51 -- 90 |
ribonuclease Z |
stm1109 |
_____________249_____________________________________________301\n_____________|_______________________________________________|\n5'-UCG...CUCAC____UGUA________UUUAUUACAUCU________CAAC_______GGAG-3'\n______________GCAA____ACGGCAAU____________GCAACAUC____GCAGCCG\n______________||||____||::|||:____________:|||||||____:||:|||\n______________CGUU____UGUUGUUG____________UGUUGUAG____UGUUGGC\n3'-UUU...GUUAA____UG_________________________________________AUUCG...UCA-5'\n_____________|_______________________________________________|\n_____________91______________________________________________50\n |
290 -- 296 |
62 -- 68 |
-28.5454 kcal/mol |
7.10881 kcal/mol |
8.62576 kcal/mol |
249 301@LB@ | |@LB@5'-UCG...CUCAC UGUA UUUAUUACAUCU CAAC GGAG-3'@LB@ GCAA ACGGCAAU GCAACAUC GCAGCCG@LB@ |||| ||::|||: :||||||| :||:|||@LB@ CGUU UGUUGUUG UGUUGUAG UGUUGGC@LB@3'-UUU...GUUAA UG AUUCG...UCA-5'@LB@ | |@LB@ 91 50@LB@@LB@@LB@Energy -17.21 kcal/mol@LB@Hybridization Energy -28.5454 kcal/mol@LB@Unfolding Energy - mRNA 7.10881 kcal/mol@LB@Unfolding Energy - sRNA 8.62576 kcal/mol@LB@@LB@Position - mRNA 250 -- 300@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 163 |
0.008532 |
0.1864 |
stm3093 |
endA |
-16.58 |
0.065141 |
135 -- 160 |
72 -- 101 |
deoxyribonuclease I |
|
_____________134___________________________________161\n_____________|_____________________________________|\n5'-CCA...CUUUC_____________________U_______________UUUCG...CGG-3'\n______________CUGA___GCGGACUGAUUGCA_ACA____GACACAAC\n______________||||___||:|||::||||||_|||____:|||||||\n______________GACU___CGUCUGGUUAACGU_UGU____UUGUGUUG\n3'-UUU...CACCA____UAG______________U___GUUG________UAGUG...UCA-5'\n_____________|_____________________________________|\n_____________102___________________________________71\n |
154 -- 160 |
72 -- 78 |
-36.4155 kcal/mol |
5.60666 kcal/mol |
13.5432 kcal/mol |
134 161@LB@ | |@LB@5'-CCA...CUUUC U UUUCG...CGG-3'@LB@ CUGA GCGGACUGAUUGCA ACA GACACAAC@LB@ |||| ||:|||::|||||| ||| :|||||||@LB@ GACU CGUCUGGUUAACGU UGU UUGUGUUG@LB@3'-UUU...CACCA UAG U GUUG UAGUG...UCA-5'@LB@ | |@LB@ 102 71@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -36.4155 kcal/mol@LB@Unfolding Energy - mRNA 5.60666 kcal/mol@LB@Unfolding Energy - sRNA 13.5432 kcal/mol@LB@@LB@Position - mRNA 135 -- 160@LB@Position - sRNA 72 -- 101@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 84 |
0.003893 |
0.1596 |
stm2015 |
erfK |
-27.15 |
0.001054 |
109 -- 172 |
35 -- 90 |
L D-transpeptidase |
|
_____________108____________________________________________________173\n_____________|______________________________________________________|\n5'-GAA...GGAAC____________UAACCCGGGC________________AU_____AA_______AUACU...UGG-3'\n______________GCAAACGCAACA__________GCACAACA_C_CAGCC__GUGAG__AAAAGCU\n______________||||||:|||||__________:|||||||_|_||:||__||:||__||||||:\n______________CGUUUGUGUUGU__________UGUGUUGU_G_GUUGG__CAUUC__UUUUCGG\n3'-UUU...GUUAA______________________________A_U____________GG_______GUAGU...UCA-5'\n_____________|______________________________________________________|\n_____________91_____________________________________________________34\n |
154 -- 160 |
49 -- 55 |
-46.562 kcal/mol |
9.44521 kcal/mol |
15.2217 kcal/mol |
108 173@LB@ | |@LB@5'-GAA...GGAAC UAACCCGGGC AU AA AUACU...UGG-3'@LB@ GCAAACGCAACA GCACAACA C CAGCC GUGAG AAAAGCU@LB@ ||||||:||||| :||||||| | ||:|| ||:|| ||||||:@LB@ CGUUUGUGUUGU UGUGUUGU G GUUGG CAUUC UUUUCGG@LB@3'-UUU...GUUAA A U GG GUAGU...UCA-5'@LB@ | |@LB@ 91 34@LB@@LB@@LB@Energy -27.15 kcal/mol@LB@Hybridization Energy -46.562 kcal/mol@LB@Unfolding Energy - mRNA 9.44521 kcal/mol@LB@Unfolding Energy - sRNA 15.2217 kcal/mol@LB@@LB@Position - mRNA 109 -- 172@LB@Position - sRNA 35 -- 90@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 185 |
0.01043 |
0.1967 |
stm1700 |
fabI |
-13.03 |
0.238331 |
75 -- 107 |
38 -- 76 |
enoyl-[acyl-carrier-protein] reductase |
|
_____________74______________________________108\n_____________|_______________________________|\n5'-AGU...AGCGU____C______C___________________UAUAA...CUG-3'\n______________GACA_ACGGGG________CA_GGAGUGGGA\n______________||||_||:|||________||_|:||||::|\n______________CUGU_UGUCCC________GU_CUUCACUUU\n3'-UUU...GAUAC____C______AUUUACAU__C_________UUCCC...UCA-5'\n_____________|_______________________________|\n_____________77______________________________37\n |
96 -- 102 |
134 -- 140 |
-20.8604 kcal/mol |
6.05685 kcal/mol |
6.0649 kcal/mol |
74 108@LB@ | |@LB@5'-AGU...AGCGU C C UAUAA...CUG-3'@LB@ GACA ACGGGG CA GGAGUGGGA@LB@ |||| ||:||| || |:||||::|@LB@ CUGU UGUCCC GU CUUCACUUU@LB@3'-UUU...GAUAC C AUUUACAU C UUCCC...UCA-5'@LB@ | |@LB@ 77 37@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -20.8604 kcal/mol@LB@Unfolding Energy - mRNA 6.05685 kcal/mol@LB@Unfolding Energy - sRNA 6.0649 kcal/mol@LB@@LB@Position - mRNA 75 -- 107@LB@Position - sRNA 38 -- 76@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 134 -- 140@LB@ |
| 132 |
0.006673 |
0.1774 |
stm2677 |
ffh |
-17.54 |
0.045291 |
232 -- 275 |
38 -- 86 |
4.5S-RNP protein |
|
_____________231_________________________________________________________________________________________________276\n_____________|___________________________________________________________________________________________________|\n5'-UAG...CAAAA_______UA__U_____CG____UU__CC__________A_A____A___A__G___UACG___C______CU____CC__U____________AA___GGCUU...AAG-3'\n______________ACGGGCA__GU__GUGU__ACAG__GA__AGUGAGAAAG_G_AG_C__GU_UA_CGU____UGA__CGCAG__CCAA__GU__GCAUAACAACA__GAC\n______________||:|:||__||__:|||__||||__||__|||||:||||_|_||_|__|:_||_|||____|||__|||||__||||__|:__:||:|||||||__:||\n______________UGUCUGU__CA__UACA__UGUC__CU__UCACUUUUUC_C_UC_G__CG_AU_GCA____ACU__GCGUC__GGUU__CG__UGUGUUGUUGU__UUG\n3'-UUU...AUACC_______CC__UU__________________________C_A__A_AG_____G___CCAG___UA_____U_____AA__UU___________G____UAGUG...UCA-5'\n_____________|___________________________________________________________________________________________________|\n_____________87__________________________________________________________________________________________________37\n |
110 -- 116 |
76 -- 82 |
-60.3799 kcal/mol |
23.7315 kcal/mol |
24.6218 kcal/mol |
231 276@LB@ | |@LB@5'-UAG...CAAAA UA U CG UU CC A A A A G UACG C CU CC U AA GGCUU...AAG-3'@LB@ ACGGGCA GU GUGU ACAG GA AGUGAGAAAG G AG C GU UA CGU UGA CGCAG CCAA GU GCAUAACAACA GAC@LB@ ||:|:|| || :||| |||| || |||||:|||| | || | |: || ||| ||| ||||| |||| |: :||:||||||| :||@LB@ UGUCUGU CA UACA UGUC CU UCACUUUUUC C UC G CG AU GCA ACU GCGUC GGUU CG UGUGUUGUUGU UUG@LB@3'-UUU...AUACC CC UU C A A AG G CCAG UA U AA UU G UAGUG...UCA-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -17.54 kcal/mol@LB@Hybridization Energy -60.3799 kcal/mol@LB@Unfolding Energy - mRNA 23.7315 kcal/mol@LB@Unfolding Energy - sRNA 24.6218 kcal/mol@LB@@LB@Position - mRNA 232 -- 275@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 134 |
0.006725 |
0.1774 |
stm0546 |
fimD |
-17.45 |
0.046766 |
176 -- 200 |
37 -- 60 |
outer membrane usher protein |
stm0301 stm0175 stm4593 stm3638 stm0023 |
_____________175_____________201\n_____________|_______________|\n5'-UCA...AAGCC______G________GAAGA...CGA-3'\n______________ACACGA_AACACGAU\n______________||||:|_|||||:|:\n______________UGUGUU_UUGUGUUG\n3'-UUU...ACGUU______G________UAGUG...UCA-5'\n_____________|_______________|\n_____________61______________36\n |
196 -- 202 |
72 -- 78 |
-17.1314 kcal/mol |
2.16166 kcal/mol |
3.50587 kcal/mol |
175 201@LB@ | |@LB@5'-UCA...AAGCC G GAAGA...CGA-3'@LB@ ACACGA AACACGAU@LB@ ||||:| |||||:|:@LB@ UGUGUU UUGUGUUG@LB@3'-UUU...ACGUU G UAGUG...UCA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -17.45 kcal/mol@LB@Hybridization Energy -17.1314 kcal/mol@LB@Unfolding Energy - mRNA 2.16166 kcal/mol@LB@Unfolding Energy - sRNA 3.50587 kcal/mol@LB@@LB@Position - mRNA 176 -- 200@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 195 |
0.01085 |
0.197 |
stm0549 |
fimZ |
-13.17 |
0.226725 |
219 -- 235 |
155 -- 171 |
DNA-binding response regulator |
|
_____________218___________236\n_____________|_____________|\n5'-CAG...CUGUU_____________AACAC...UGA-3'\n______________AUCAUUAUGGACG\n______________||||:|||||||:\n______________UAGUGAUACCUGU\n3'-UUU...GUAAU_____________CUGUC...UCA-5'\n_____________|_____________|\n_____________172___________154\n |
225 -- 231 |
159 -- 165 |
-17.3187 kcal/mol |
3.33371 kcal/mol |
3.42647 kcal/mol |
218 236@LB@ | |@LB@5'-CAG...CUGUU AACAC...UGA-3'@LB@ AUCAUUAUGGACG@LB@ ||||:|||||||:@LB@ UAGUGAUACCUGU@LB@3'-UUU...GUAAU CUGUC...UCA-5'@LB@ | |@LB@ 172 154@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -17.3187 kcal/mol@LB@Unfolding Energy - mRNA 3.33371 kcal/mol@LB@Unfolding Energy - sRNA 3.42647 kcal/mol@LB@@LB@Position - mRNA 219 -- 235@LB@Position - sRNA 155 -- 171@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 159 -- 165@LB@ |
| 166 |
0.009028 |
0.1932 |
stm1173 |
flgA |
-14.00 |
0.169768 |
53 -- 102 |
33 -- 85 |
flagella basal body P-ring formation protein FlgA |
|
_____________52__________________103\n_____________|___________________|\n5'-GCU...CCCUG___________GG______ACGCC...CCC-3'\n______________ACAAUGGCGCA__ACAUCA\n______________||||:::|:||__||||||\n______________UGUUGUUGUGU__UGUAGU\n3'-UUU...GUUUG___________________GUUGG...UCA-5'\n_____________|___________________|\n_____________86__________________32\n |
259 -- 265 |
74 -- 80 |
-16.6955 kcal/mol |
2.54166 kcal/mol |
4.84988 kcal/mol |
52 103@LB@ | |@LB@5'-GCU...CCCUG GG ACGCC...CCC-3'@LB@ ACAAUGGCGCA ACAUCA@LB@ ||||:::|:|| ||||||@LB@ UGUUGUUGUGU UGUAGU@LB@3'-UUU...GUUUG GUUGG...UCA-5'@LB@ | |@LB@ 86 32@LB@@LB@@LB@Energy -14.00 kcal/mol@LB@Hybridization Energy -16.6955 kcal/mol@LB@Unfolding Energy - mRNA 2.54166 kcal/mol@LB@Unfolding Energy - sRNA 4.84988 kcal/mol@LB@@LB@Position - mRNA 53 -- 102@LB@Position - sRNA 33 -- 85@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 74 -- 80@LB@ |
