28 |
7.532e-05 |
0.01177 |
pa2865 |
N/A |
-15.38 |
0.007930 |
179 -- 247 |
40 -- 110 |
glycosylase |
|
_____________178__________________________________________________________________________248\n_____________|____________________________________________________________________________|\n5'-CCG...CAUCG_______CCUCU_____CCUGGA___C_C________________________U_____U______G_________CUUGC...AAC-3'\n______________AGCCUGG_____GGAGA______UGA_G_GUCUG_UUGC_UG___CUUUC_GC_UUGCC_GCUGGU_CUCGC_ACC\n______________||||||:_____|||||______|||_|_|||:|_:|||_||___||:||_||_||:||_||||:|_|||||_|||\n______________UCGGACU_____CCUCU______ACU_C_CAGGC_GACG_AC___GAGAG_CG_AAUGG_CGACUA_GAGCG_UGG\n3'-UUU...ACUAA_______ACU_______AUUAG____U_U_____U____C__CCA_____U________C____________C___UCAAC...GUU-5'\n_____________|____________________________________________________________________________|\n_____________111__________________________________________________________________________39\n |
179 -- 185 |
104 -- 110 |
-64.7758 kcal/mol |
26.0418 kcal/mol |
23.3621 kcal/mol |
178 248@LB@ | |@LB@5'-CCG...CAUCG CCUCU CCUGGA C C U U G CUUGC...AAC-3'@LB@ AGCCUGG GGAGA UGA G GUCUG UUGC UG CUUUC GC UUGCC GCUGGU CUCGC ACC@LB@ ||||||: ||||| ||| | |||:| :||| || ||:|| || ||:|| ||||:| ||||| |||@LB@ UCGGACU CCUCU ACU C CAGGC GACG AC GAGAG CG AAUGG CGACUA GAGCG UGG@LB@3'-UUU...ACUAA ACU AUUAG U U U C CCA U C C UCAAC...GUU-5'@LB@ | |@LB@ 111 39@LB@@LB@@LB@Energy -15.38 kcal/mol@LB@Hybridization Energy -64.7758 kcal/mol@LB@Unfolding Energy - mRNA 26.0418 kcal/mol@LB@Unfolding Energy - sRNA 23.3621 kcal/mol@LB@@LB@Position - mRNA 179 -- 247@LB@Position - sRNA 40 -- 110@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 104 -- 110@LB@ |
27 |
6.94e-05 |
0.01177 |
pa5535 |
N/A |
-11.95 |
0.066023 |
197 -- 251 |
53 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________196______________________________________________________________________252\n_____________|________________________________________________________________________|\n5'-GAG...UUACC________ACCAAC____AC_______________UCA______U_____CC__C_________________AAGAG...GGG-3'\n______________AACCGUGA______GCCU______________CUG______CCG_GCUGU__GG_UUUCUCGGC__GCCGGC\n______________||||||||______||||______________|||______|||_:|||:__||_|:||||:||__:|||||\n______________UUGGCACU______CGGA______________GAC______GGC_UGACG__CC_AGAGAGUCG__UGGCCG\n3'-UUU...AGUUU________AAU_______CUACUCCUCUAUUA___UUCUCA_________CA__C_________AA______ACUAG...GUU-5'\n_____________|________________________________________________________________________|\n_____________121______________________________________________________________________52\n |
239 -- 245 |
61 -- 67 |
-49.0988 kcal/mol |
18.4451 kcal/mol |
18.7053 kcal/mol |
196 252@LB@ | |@LB@5'-GAG...UUACC ACCAAC AC UCA U CC C AAGAG...GGG-3'@LB@ AACCGUGA GCCU CUG CCG GCUGU GG UUUCUCGGC GCCGGC@LB@ |||||||| |||| ||| ||| :|||: || |:||||:|| :|||||@LB@ UUGGCACU CGGA GAC GGC UGACG CC AGAGAGUCG UGGCCG@LB@3'-UUU...AGUUU AAU CUACUCCUCUAUUA UUCUCA CA C AA ACUAG...GUU-5'@LB@ | |@LB@ 121 52@LB@@LB@@LB@Energy -11.95 kcal/mol@LB@Hybridization Energy -49.0988 kcal/mol@LB@Unfolding Energy - mRNA 18.4451 kcal/mol@LB@Unfolding Energy - sRNA 18.7053 kcal/mol@LB@@LB@Position - mRNA 197 -- 251@LB@Position - sRNA 53 -- 120@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 61 -- 67@LB@ |
30 |
8.033e-05 |
0.01177 |
pa3717 |
N/A |
-10.05 |
0.175331 |
209 -- 216 |
75 -- 82 |
FkbP-type peptidyl-prolyl cis-trans isomerase |
|
_____________208______217\n_____________|________|\n5'-UCU...AACGA________AGAUC...AAG-3'\n______________CCGACUGC\n______________||||||||\n______________GGCUGACG\n3'-UUU...UCUCA________CACCC...GUU-5'\n_____________|________|\n_____________83_______74\n |
210 -- 216 |
75 -- 81 |
-16.1929 kcal/mol |
2.05248 kcal/mol |
4.09516 kcal/mol |
208 217@LB@ | |@LB@5'-UCU...AACGA AGAUC...AAG-3'@LB@ CCGACUGC@LB@ ||||||||@LB@ GGCUGACG@LB@3'-UUU...UCUCA CACCC...GUU-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -16.1929 kcal/mol@LB@Unfolding Energy - mRNA 2.05248 kcal/mol@LB@Unfolding Energy - sRNA 4.09516 kcal/mol@LB@@LB@Position - mRNA 209 -- 216@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 75 -- 81@LB@ |
35 |
0.0001057 |
0.01388 |
pa1103 |
N/A |
-18.12 |
0.000977 |
185 -- 207 |
81 -- 102 |
flagellar assembly protein FliH |
|
_____________184_____________________208\n_____________|_______________________|\n5'-CGA...GUGGC_________________U_____CCCAC...AGC-3'\n______________GAGGAGAUGAUCUGAGG_GGUCC\n______________||||||||:||||||:|_:||||\n______________CUCCUCUAUUAGACUUC_UCAGG\n3'-UUU...GACUA_______________________CUGAC...GUU-5'\n_____________|_______________________|\n_____________103_____________________80\n |
195 -- 201 |
86 -- 92 |
-35.642 kcal/mol |
10.0244 kcal/mol |
7.49511 kcal/mol |
184 208@LB@ | |@LB@5'-CGA...GUGGC U CCCAC...AGC-3'@LB@ GAGGAGAUGAUCUGAGG GGUCC@LB@ ||||||||:||||||:| :||||@LB@ CUCCUCUAUUAGACUUC UCAGG@LB@3'-UUU...GACUA CUGAC...GUU-5'@LB@ | |@LB@ 103 80@LB@@LB@@LB@Energy -18.12 kcal/mol@LB@Hybridization Energy -35.642 kcal/mol@LB@Unfolding Energy - mRNA 10.0244 kcal/mol@LB@Unfolding Energy - sRNA 7.49511 kcal/mol@LB@@LB@Position - mRNA 185 -- 207@LB@Position - sRNA 81 -- 102@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 86 -- 92@LB@ |
34 |
0.0001037 |
0.01388 |
pa0494 |
N/A |
-14.76 |
0.012046 |
49 -- 92 |
75 -- 117 |
acetyl-CoA carboxylase biotin carboxylase subunit |
|
_____________48_______________________________________________93\n_____________|________________________________________________|\n5'-CGA...GGCAG______C__G_____C________________C__UUU_____AG___AGGCC...CGG-3'\n______________CGUGAU_GG_CUGAU___GAGGUGA__UGAAG_AG___UCCGA__UGC\n______________||||||_:|_|||||___|||:|:|__|||||_||___|||||__|||\n______________GCACUA_UC_GACUA___CUCUAUU__ACUUC_UC___AGGCU__ACG\n3'-UUU...UUUUG______A__G_____CUC_______AG________________G____CACCC...GUU-5'\n_____________|________________________________________________|\n_____________118______________________________________________74\n |
65 -- 71 |
93 -- 99 |
-39.1416 kcal/mol |
12.2169 kcal/mol |
12.1721 kcal/mol |
48 93@LB@ | |@LB@5'-CGA...GGCAG C G C C UUU AG AGGCC...CGG-3'@LB@ CGUGAU GG CUGAU GAGGUGA UGAAG AG UCCGA UGC@LB@ |||||| :| ||||| |||:|:| ||||| || ||||| |||@LB@ GCACUA UC GACUA CUCUAUU ACUUC UC AGGCU ACG@LB@3'-UUU...UUUUG A G CUC AG G CACCC...GUU-5'@LB@ | |@LB@ 118 74@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -39.1416 kcal/mol@LB@Unfolding Energy - mRNA 12.2169 kcal/mol@LB@Unfolding Energy - sRNA 12.1721 kcal/mol@LB@@LB@Position - mRNA 49 -- 92@LB@Position - sRNA 75 -- 117@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 93 -- 99@LB@ |
36 |
0.0001485 |
0.01896 |
pa2147 |
katE |
-15.32 |
0.008256 |
177 -- 207 |
74 -- 109 |
catalase HPII |
|
_____________176_____________________________________208\n_____________|_______________________________________|\n5'-CGU...UUCAU___CAG_____________________AA_____GA___AGCAG...AUC-3'\n______________GCC___GAUGAGGAGA________GGA__CCGAU__GCG\n______________|||___||||||||||________:||__||||:__|||\n______________CGG___CUACUCCUCU________UCU__GGCUG__CGC\n3'-UUU...CUAAU___A____________AUUAGACU___CA_____A____ACCCA...GUU-5'\n_____________|_______________________________________|\n_____________110_____________________________________73\n |
186 -- 192 |
96 -- 102 |
-32.3599 kcal/mol |
5.50185 kcal/mol |
11.5406 kcal/mol |
176 208@LB@ | |@LB@5'-CGU...UUCAU CAG AA GA AGCAG...AUC-3'@LB@ GCC GAUGAGGAGA GGA CCGAU GCG@LB@ ||| |||||||||| :|| ||||: |||@LB@ CGG CUACUCCUCU UCU GGCUG CGC@LB@3'-UUU...CUAAU A AUUAGACU CA A ACCCA...GUU-5'@LB@ | |@LB@ 110 73@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -32.3599 kcal/mol@LB@Unfolding Energy - mRNA 5.50185 kcal/mol@LB@Unfolding Energy - sRNA 11.5406 kcal/mol@LB@@LB@Position - mRNA 177 -- 207@LB@Position - sRNA 74 -- 109@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 96 -- 102@LB@ |
37 |
0.0001556 |
0.01933 |
pa4880 |
N/A |
-12.85 |
0.039617 |
174 -- 244 |
39 -- 119 |
bacterioferritin |
|
_____________173_____________________________________________________________________________________245\n_____________|_______________________________________________________________________________________|\n5'-CGC...UUUUC________C_____CA________A____C__U__CCACC____A____A__GAC________________________________UGCCC...GCC-3'\n______________ACCG_GAU_AGCCU____AGGAGA_AA_C_GA_GA_____GUUC_ACUG_CG___GUC___CAG___ACC__CU____UCGCGACCG\n______________||||_|||_|||||____||||||_||_|_||_||_____||:|_||||_||___|||___|||___|||__||____||||||||:\n______________UGGC_CUA_UCGGA____UCCUCU_UU_G_CU_CU_____CAGG_UGAC_GC___CAG___GUC___UGG__GA____AGCGCUGGU\n3'-UUU...GUUUU____A___A_____CUAC______A__A_A__U___________C_______ACC___AGA___GAA___CC__CUAG_________CAACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________38\n |
238 -- 244 |
39 -- 45 |
-53.1463 kcal/mol |
16.8944 kcal/mol |
23.4063 kcal/mol |
173 245@LB@ | |@LB@5'-CGC...UUUUC C CA A C U CCACC A A GAC UGCCC...GCC-3'@LB@ ACCG GAU AGCCU AGGAGA AA C GA GA GUUC ACUG CG GUC CAG ACC CU UCGCGACCG@LB@ |||| ||| ||||| |||||| || | || || ||:| |||| || ||| ||| ||| || ||||||||:@LB@ UGGC CUA UCGGA UCCUCU UU G CU CU CAGG UGAC GC CAG GUC UGG GA AGCGCUGGU@LB@3'-UUU...GUUUU A A CUAC A A A U C ACC AGA GAA CC CUAG CAACU...GUU-5'@LB@ | |@LB@ 120 38@LB@@LB@@LB@Energy -12.85 kcal/mol@LB@Hybridization Energy -53.1463 kcal/mol@LB@Unfolding Energy - mRNA 16.8944 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 174 -- 244@LB@Position - sRNA 39 -- 119@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 39 -- 45@LB@ |
38 |
0.0001678 |
0.02029 |
pa4131 |
N/A |
-10.32 |
0.153559 |
164 -- 172 |
74 -- 82 |
iron-sulfur protein |
|
_____________163_______173\n_____________|_________|\n5'-CUC...GGGAA_________CCCCU...GCG-3'\n______________CCGGCUGCG\n______________|||:|||||\n______________GGCUGACGC\n3'-UUU...UCUCA_________ACCCA...GUU-5'\n_____________|_________|\n_____________83________73\n |
166 -- 172 |
74 -- 80 |
-17.7171 kcal/mol |
3.29242 kcal/mol |
4.10111 kcal/mol |
163 173@LB@ | |@LB@5'-CUC...GGGAA CCCCU...GCG-3'@LB@ CCGGCUGCG@LB@ |||:|||||@LB@ GGCUGACGC@LB@3'-UUU...UCUCA ACCCA...GUU-5'@LB@ | |@LB@ 83 73@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -17.7171 kcal/mol@LB@Unfolding Energy - mRNA 3.29242 kcal/mol@LB@Unfolding Energy - sRNA 4.10111 kcal/mol@LB@@LB@Position - mRNA 164 -- 172@LB@Position - sRNA 74 -- 82@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 74 -- 80@LB@ |
39 |
0.0001834 |
0.02162 |
pa3120 |
leuD |
-14.73 |
0.012246 |
171 -- 252 |
39 -- 118 |
isopropylmalate isomerase small subunit |
|
_____________170________________________________________________________________________________________253\n_____________|__________________________________________________________________________________________|\n5'-GGC...GAUGU___C_A____CUC______G___AACC_______AACCCUAUAC__A___GA_C________G________________A__________ACGUC...UCA-3'\n______________CCG_G_AUUG___GCCUGA_GAG____GAGAUGA__________CC_GAC__C___GGUCUC_UC_GCU__CC_GCUGG__UCGCG_CCA\n______________|||_|_|||:___||||||_|||____|||||:|__________||_|||__|___||||||_||_|||__||_||||:__|||||_|||\n______________GGC_C_UAAU___CGGACU_CUC____CUCUAUU__________GG_CUG__G___CCAGAG_AG_CGA__GG_CGACU__AGCGC_GGU\n3'-UUU...UUUUU___A_______________A______________AGACUUCUCA______AC_CAC_________U___AU__C_____AG_____U___CAACU...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________119________________________________________________________________________________________38\n |
198 -- 204 |
93 -- 99 |
-62.4738 kcal/mol |
24.3406 kcal/mol |
23.4063 kcal/mol |
170 253@LB@ | |@LB@5'-GGC...GAUGU C A CUC G AACC AACCCUAUAC A GA C G A ACGUC...UCA-3'@LB@ CCG G AUUG GCCUGA GAG GAGAUGA CC GAC C GGUCUC UC GCU CC GCUGG UCGCG CCA@LB@ ||| | |||: |||||| ||| |||||:| || ||| | |||||| || ||| || ||||: ||||| |||@LB@ GGC C UAAU CGGACU CUC CUCUAUU GG CUG G CCAGAG AG CGA GG CGACU AGCGC GGU@LB@3'-UUU...UUUUU A A AGACUUCUCA AC CAC U AU C AG U CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -62.4738 kcal/mol@LB@Unfolding Energy - mRNA 24.3406 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 171 -- 252@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 93 -- 99@LB@ |
40 |
0.0001908 |
0.02192 |
pa5015 |
aceE |
-12.88 |
0.038887 |
273 -- 297 |
101 -- 123 |
pyruvate dehydrogenase subunit E1 |
|
_____________272________________________298\n_____________|__________________________|\n5'-CCU...AAGGU________C_CUC_____________CCC-3'\n______________GAAGACCG_G___AUUA_CCUGAUGA\n______________:||:||||_|___||||_||||||||\n______________UUUUUGGC_C___UAAU_GGACUACU\n3'-UUU...CCCAG________A________C________CCUCU...GUU-5'\n_____________|__________________________|\n_____________124________________________100\n |
291 -- 297 |
101 -- 107 |
-21.2393 kcal/mol |
6.11337 kcal/mol |
2.24445 kcal/mol |
272 298@LB@ | |@LB@5'-CCU...AAGGU C CUC CCC-3'@LB@ GAAGACCG G AUUA CCUGAUGA@LB@ :||:|||| | |||| ||||||||@LB@ UUUUUGGC C UAAU GGACUACU@LB@3'-UUU...CCCAG A C CCUCU...GUU-5'@LB@ | |@LB@ 124 100@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -21.2393 kcal/mol@LB@Unfolding Energy - mRNA 6.11337 kcal/mol@LB@Unfolding Energy - sRNA 2.24445 kcal/mol@LB@@LB@Position - mRNA 273 -- 297@LB@Position - sRNA 101 -- 123@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 101 -- 107@LB@ |