30 |
0.001442 |
0.1635 |
b3458 |
livK |
-12.84 |
0.084462 |
180 -- 215 |
6 -- 33 |
leucine transporter subunit |
|
_____________179___________________________________216\n_____________|_____________________________________|\n5'-UGU...AACAU______________UUUUGACU__G___C____U___AAAAC...CGA-3'\n______________CAC_GAAUGGGGAU________AU_AAA_GGAA_GCG\n______________|||_:||||||||:________||_|||_|:||_||:\n______________GUG_UUUACCCCUG________UA_UUU_CUUU_CGU\n3'-UUU...CCGAG___U____________________G________U___CACCG-5'\n_____________|_____________________________________|\n_____________34____________________________________5\n |
186 -- 192 |
20 -- 26 |
-21.4141 kcal/mol |
5.49822 kcal/mol |
3.07787 kcal/mol |
179 216@LB@ | |@LB@5'-UGU...AACAU UUUUGACU G C U AAAAC...CGA-3'@LB@ CAC GAAUGGGGAU AU AAA GGAA GCG@LB@ ||| :||||||||: || ||| |:|| ||:@LB@ GUG UUUACCCCUG UA UUU CUUU CGU@LB@3'-UUU...CCGAG U G U CACCG-5'@LB@ | |@LB@ 34 5@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -21.4141 kcal/mol@LB@Unfolding Energy - mRNA 5.49822 kcal/mol@LB@Unfolding Energy - sRNA 3.07787 kcal/mol@LB@@LB@Position - mRNA 180 -- 215@LB@Position - sRNA 6 -- 33@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 20 -- 26@LB@ |
32 |
0.001499 |
0.1635 |
b0661 |
miaB |
-12.88 |
0.082685 |
213 -- 250 |
6 -- 36 |
tRNA-i(6)A37 methylthiotransferase |
|
_____________212____________________________________251\n_____________|______________________________________|\n5'-CGC...AAAAA_______UU_AAACC_____C_______U___C_____CGAUU...AAC-3'\n______________CUCCAUA__A_____UGGGG_UGUCAGA_GAA_GAGUA\n______________|||||:|__|_____|||||_::|||:|_|||_:||:|\n______________GAGGUGU__U_____ACCCC_GUAGUUU_CUU_UUCGU\n3'-UUU...UACCC_______UU___________U_________________CACCG-5'\n_____________|______________________________________|\n_____________37_____________________________________5\n |
234 -- 240 |
14 -- 20 |
-26.1374 kcal/mol |
6.57825 kcal/mol |
6.67617 kcal/mol |
212 251@LB@ | |@LB@5'-CGC...AAAAA UU AAACC C U C CGAUU...AAC-3'@LB@ CUCCAUA A UGGGG UGUCAGA GAA GAGUA@LB@ |||||:| | ||||| ::|||:| ||| :||:|@LB@ GAGGUGU U ACCCC GUAGUUU CUU UUCGU@LB@3'-UUU...UACCC UU U CACCG-5'@LB@ | |@LB@ 37 5@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -26.1374 kcal/mol@LB@Unfolding Energy - mRNA 6.57825 kcal/mol@LB@Unfolding Energy - sRNA 6.67617 kcal/mol@LB@@LB@Position - mRNA 213 -- 250@LB@Position - sRNA 6 -- 36@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 14 -- 20@LB@ |
33 |
0.001538 |
0.1635 |
b4141 |
yjeH |
-13.95 |
0.048780 |
254 -- 275 |
1 -- 22 |
putative transporter |
|
_____________253____________________276\n_____________|______________________|\n5'-CAG...CUAUC_______UUAUU_____C____GUGUU...CUG-3'\n______________GACGUCA_____AGGCA_UGGC\n______________|||:|||_____|:|||_||||\n______________CUGUAGU_____UUCGU_ACCG\n3'-UUU...UACCC_______UUCUU_____C____-5'\n_____________|_____________________|\n_____________23____________________1\n |
254 -- 260 |
16 -- 22 |
-22.2624 kcal/mol |
6.77205 kcal/mol |
1.54023 kcal/mol |
253 276@LB@ | |@LB@5'-CAG...CUAUC UUAUU C GUGUU...CUG-3'@LB@ GACGUCA AGGCA UGGC@LB@ |||:||| |:||| ||||@LB@ CUGUAGU UUCGU ACCG@LB@3'-UUU...UACCC UUCUU C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -22.2624 kcal/mol@LB@Unfolding Energy - mRNA 6.77205 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 254 -- 275@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 16 -- 22@LB@ |
45 |
0.002187 |
0.1648 |
b3391 |
hofQ |
-14.99 |
0.027914 |
2 -- 20 |
1 -- 20 |
DNA catabolic putative fimbrial transporter |
|
_____________1____________________21\n_____________|____________________|\n__________5'-C__________U_________GAGGC...UAG-3'\n______________UAUCAGGGGA_GGUAG_GGC\n______________:||||::|:|_:|:||_|||\n______________GUAGUUUCUU_UCGUC_CCG\n3'-UUU...CCCCU__________U_____A___-5'\n_____________|___________________|\n_____________21__________________1\n |
5 -- 11 |
11 -- 17 |
-22.4478 kcal/mol |
5.99969 kcal/mol |
1.45855 kcal/mol |
1 21@LB@ | |@LB@ 5'-C U GAGGC...UAG-3'@LB@ UAUCAGGGGA GGUAG GGC@LB@ :||||::|:| :|:|| |||@LB@ GUAGUUUCUU UCGUC CCG@LB@3'-UUU...CCCCU U A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -22.4478 kcal/mol@LB@Unfolding Energy - mRNA 5.99969 kcal/mol@LB@Unfolding Energy - sRNA 1.45855 kcal/mol@LB@@LB@Position - mRNA 2 -- 20@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 11 -- 17@LB@ |
44 |
0.002166 |
0.1648 |
b3349 |
slyD |
-19.18 |
0.001707 |
20 -- 41 |
5 -- 23 |
FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) |
|
_____________19_____________________42\n_____________|______________________|\n5'-UGU...AGUGC__________UGC_________ACAAA...ACU-3'\n______________GGACAUCAGA___GAGAAGCAG\n______________||||||||:|___||:||||||\n______________CCUGUAGUUU___CUUUUCGUC\n3'-UUU...UUACC______________________ACCG-5'\n_____________|______________________|\n_____________24_____________________4\n |
35 -- 41 |
5 -- 11 |
-25.7728 kcal/mol |
5.01574 kcal/mol |
1.57523 kcal/mol |
19 42@LB@ | |@LB@5'-UGU...AGUGC UGC ACAAA...ACU-3'@LB@ GGACAUCAGA GAGAAGCAG@LB@ ||||||||:| ||:||||||@LB@ CCUGUAGUUU CUUUUCGUC@LB@3'-UUU...UUACC ACCG-5'@LB@ | |@LB@ 24 4@LB@@LB@@LB@Energy -19.18 kcal/mol@LB@Hybridization Energy -25.7728 kcal/mol@LB@Unfolding Energy - mRNA 5.01574 kcal/mol@LB@Unfolding Energy - sRNA 1.57523 kcal/mol@LB@@LB@Position - mRNA 20 -- 41@LB@Position - sRNA 5 -- 23@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 5 -- 11@LB@ |
37 |
0.001785 |
0.1648 |
b3933 |
ftsN |
-15.64 |
0.019200 |
24 -- 52 |
1 -- 29 |
essential cell division protein |
|
_____________23______________________________53\n_____________|_______________________________|\n5'-AGC...UGAUC_____CA______A__CGUU___________UCUCG...CUC-3'\n______________AAAUG__GGGGCA_CA______GGCAGUGGC\n______________|||||__|||:||_||______:||||||||\n______________UUUAC__CCCUGU_GU______UCGUCACCG\n3'-UUU...GGUGU_____________A__UUCUUU_________-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
46 -- 52 |
1 -- 7 |
-29.0551 kcal/mol |
10.8938 kcal/mol |
2.51907 kcal/mol |
23 53@LB@ | |@LB@5'-AGC...UGAUC CA A CGUU UCUCG...CUC-3'@LB@ AAAUG GGGGCA CA GGCAGUGGC@LB@ ||||| |||:|| || :||||||||@LB@ UUUAC CCCUGU GU UCGUCACCG@LB@3'-UUU...GGUGU A UUCUUU -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -15.64 kcal/mol@LB@Hybridization Energy -29.0551 kcal/mol@LB@Unfolding Energy - mRNA 10.8938 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 24 -- 52@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 1 -- 7@LB@ |
46 |
0.002205 |
0.1648 |
b1662 |
ribC |
-17.71 |
0.005126 |
34 -- 61 |
2 -- 29 |
riboflavin synthase alpha subunit |
|
_____________33_____________________________62\n_____________|______________________________|\n5'-UUU...CGCCU_______CA___A_____A___________GAAAU...UGG-3'\n______________GAAUGGG__GCA__AAAG_AGAAGCAG_GG\n______________:||||||__:||__||||_|:||||||_||\n______________UUUACCC__UGU__UUUC_UUUUCGUC_CC\n3'-UUU...GGUGU_______C____AG_____________A__G-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
53 -- 59 |
5 -- 11 |
-25.8778 kcal/mol |
5.65259 kcal/mol |
2.51906 kcal/mol |
33 62@LB@ | |@LB@5'-UUU...CGCCU CA A A GAAAU...UGG-3'@LB@ GAAUGGG GCA AAAG AGAAGCAG GG@LB@ :|||||| :|| |||| |:|||||| ||@LB@ UUUACCC UGU UUUC UUUUCGUC CC@LB@3'-UUU...GGUGU C AG A G-5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -17.71 kcal/mol@LB@Hybridization Energy -25.8778 kcal/mol@LB@Unfolding Energy - mRNA 5.65259 kcal/mol@LB@Unfolding Energy - sRNA 2.51906 kcal/mol@LB@@LB@Position - mRNA 34 -- 61@LB@Position - sRNA 2 -- 29@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 5 -- 11@LB@ |
47 |
0.002271 |
0.1648 |
b3169 |
nusA |
-13.61 |
0.058009 |
55 -- 79 |
4 -- 28 |
transcription termination/antitermination L factor |
|
_____________54__________________________80\n_____________|___________________________|\n5'-UUG...UCGUA_____CA________UC__________AGACG...CAG-3'\n______________AAUGG__GGGCGUUA____AAAGCGGU\n______________|||||__||:|:|:|____|||||:||\n______________UUACC__CCUGUAGU____UUUCGUCA\n3'-UUU...GUGUU_______________UUCU________CCG-5'\n_____________|___________________________|\n_____________29__________________________3\n |
73 -- 79 |
4 -- 10 |
-21.8237 kcal/mol |
5.69952 kcal/mol |
2.51457 kcal/mol |
54 80@LB@ | |@LB@5'-UUG...UCGUA CA UC AGACG...CAG-3'@LB@ AAUGG GGGCGUUA AAAGCGGU@LB@ ||||| ||:|:|:| |||||:||@LB@ UUACC CCUGUAGU UUUCGUCA@LB@3'-UUU...GUGUU UUCU CCG-5'@LB@ | |@LB@ 29 3@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -21.8237 kcal/mol@LB@Unfolding Energy - mRNA 5.69952 kcal/mol@LB@Unfolding Energy - sRNA 2.51457 kcal/mol@LB@@LB@Position - mRNA 55 -- 79@LB@Position - sRNA 4 -- 28@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 4 -- 10@LB@ |
39 |
0.001912 |
0.1648 |
b2532 |
trmJ |
-14.54 |
0.035636 |
97 -- 121 |
1 -- 23 |
tRNA mC32 mU32 2'-O-methyltransferase SAM-dependent |
|
_____________96________________________122\n_____________|_________________________|\n5'-CGU...UCACU_____________C__G_AAAC___GCAGA...UGU-3'\n______________GGAUGUUAAAGAA_GG_A____GGC\n______________|||::|:||||||_:|_|____|||\n______________CCUGUAGUUUCUU_UC_U____CCG\n3'-UUU...UUACC_____________U__G_CA_____-5'\n_____________|________________________|\n_____________24_______________________1\n |
103 -- 109 |
11 -- 17 |
-19.8008 kcal/mol |
3.67656 kcal/mol |
1.57928 kcal/mol |
96 122@LB@ | |@LB@5'-CGU...UCACU C G AAAC GCAGA...UGU-3'@LB@ GGAUGUUAAAGAA GG A GGC@LB@ |||::|:|||||| :| | |||@LB@ CCUGUAGUUUCUU UC U CCG@LB@3'-UUU...UUACC U G CA -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -19.8008 kcal/mol@LB@Unfolding Energy - mRNA 3.67656 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 97 -- 121@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 11 -- 17@LB@ |
50 |
0.002349 |
0.1648 |
b2040 |
rfbD |
-20.63 |
0.000491 |
127 -- 157 |
3 -- 32 |
dTDP-L-rhamnose synthase NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit |
|
_____________126______________________________158\n_____________|________________________________|\n5'-GAU...CCAAU__________UU____AUGU____________CCUAU...CUA-3'\n______________ACAAAAUGGG__GAUA_____GAAAAGUGGUG\n______________||||||||||__||:|_____||||||::|||\n______________UGUUUUACCC__CUGU_____CUUUUCGUCAC\n3'-UUU...CGAGG________________AGUUU___________CG-5'\n_____________|________________________________|\n_____________33_______________________________2\n |
151 -- 157 |
3 -- 9 |
-27.2371 kcal/mol |
4.0691 kcal/mol |
2.53925 kcal/mol |
126 158@LB@ | |@LB@5'-GAU...CCAAU UU AUGU CCUAU...CUA-3'@LB@ ACAAAAUGGG GAUA GAAAAGUGGUG@LB@ |||||||||| ||:| ||||||::|||@LB@ UGUUUUACCC CUGU CUUUUCGUCAC@LB@3'-UUU...CGAGG AGUUU CG-5'@LB@ | |@LB@ 33 2@LB@@LB@@LB@Energy -20.63 kcal/mol@LB@Hybridization Energy -27.2371 kcal/mol@LB@Unfolding Energy - mRNA 4.0691 kcal/mol@LB@Unfolding Energy - sRNA 2.53925 kcal/mol@LB@@LB@Position - mRNA 127 -- 157@LB@Position - sRNA 3 -- 32@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 3 -- 9@LB@ |