30 |
0.0007612 |
0.08814 |
stm3909 |
ilvC |
-21.15 |
0.011132 |
166 -- 188 |
66 -- 89 |
ketol-acid reductoisomerase |
|
_____________165_____________________189\n_____________|_______________________|\n5'-CCA...AACAA_______________________GGAGU...GCU-3'\n______________UAAGCGCGAC_ACACAACAUCAC\n______________:||:|:|:||_||||||||||||\n______________GUUUGUGUUG_UGUGUUGUAGUG\n3'-UUU...UUAAC__________U____________UUGGC...UCA-5'\n_____________|_______________________|\n_____________90______________________65\n |
181 -- 187 |
67 -- 73 |
-29.859 kcal/mol |
2.61707 kcal/mol |
5.66809 kcal/mol |
165 189@LB@ | |@LB@5'-CCA...AACAA GGAGU...GCU-3'@LB@ UAAGCGCGAC ACACAACAUCAC@LB@ :||:|:|:|| ||||||||||||@LB@ GUUUGUGUUG UGUGUUGUAGUG@LB@3'-UUU...UUAAC U UUGGC...UCA-5'@LB@ | |@LB@ 90 65@LB@@LB@@LB@Energy -21.15 kcal/mol@LB@Hybridization Energy -29.859 kcal/mol@LB@Unfolding Energy - mRNA 2.61707 kcal/mol@LB@Unfolding Energy - sRNA 5.66809 kcal/mol@LB@@LB@Position - mRNA 166 -- 188@LB@Position - sRNA 66 -- 89@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 67 -- 73@LB@ |
32 |
0.001017 |
0.1132 |
stm1874 |
N/A |
-30.35 |
0.000300 |
5 -- 53 |
36 -- 83 |
putative inner membrane protein |
|
_____________4__________________________________________________54\n_____________|__________________________________________________|\n_______5'-GGUU___________C______U____CUC________________A_______CCGGC...CCG-3'\n______________CAGCGGCGCAA_CAUUAC_GGCC___AG_CAAGAGCUCAUCA_AACGCGC\n______________||:|::|:|||_|||:||_::||___||_|||:|||:|||||_|||:|||\n______________GUUGUUGUGUU_GUAGUG_UUGG___UC_GUUUUCGGGUAGU_UUGUGCG\n3'-UUU...UUUGU_______________________CAU__G_____________C_______UAAGG...UCA-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________35\n |
47 -- 53 |
36 -- 42 |
-54.7325 kcal/mol |
11.1988 kcal/mol |
22.0738 kcal/mol |
4 54@LB@ | |@LB@ 5'-GGUU C U CUC A CCGGC...CCG-3'@LB@ CAGCGGCGCAA CAUUAC GGCC AG CAAGAGCUCAUCA AACGCGC@LB@ ||:|::|:||| |||:|| ::|| || |||:|||:||||| |||:|||@LB@ GUUGUUGUGUU GUAGUG UUGG UC GUUUUCGGGUAGU UUGUGCG@LB@3'-UUU...UUUGU CAU G C UAAGG...UCA-5'@LB@ | |@LB@ 84 35@LB@@LB@@LB@Energy -30.35 kcal/mol@LB@Hybridization Energy -54.7325 kcal/mol@LB@Unfolding Energy - mRNA 11.1988 kcal/mol@LB@Unfolding Energy - sRNA 22.0738 kcal/mol@LB@@LB@Position - mRNA 5 -- 53@LB@Position - sRNA 36 -- 83@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 36 -- 42@LB@ |
33 |
0.001058 |
0.1142 |
stm0380 |
ddlA |
-21.71 |
0.008945 |
31 -- 67 |
39 -- 76 |
D-alanine--D-alanine ligase A |
|
_____________30____________________68\n_____________|_____________________|\n5'-AGC...GCCAA___C___C_____________AUCAG...AAA-3'\n______________UGC__GC_CAACAGCACAAUA\n______________|||__:|_|||||:|||||:|\n______________ACG__UG_GUUGUUGUGUUGU\n3'-UUU...GGUUA___UU__U_____________AGUGU...UCA-5'\n_____________|_____________________|\n_____________77____________________38\n |
64 -- 70 |
71 -- 77 |
-20.6082 kcal/mol |
2.86044 kcal/mol |
3.80854 kcal/mol |
30 68@LB@ | |@LB@5'-AGC...GCCAA C C AUCAG...AAA-3'@LB@ UGC GC CAACAGCACAAUA@LB@ ||| :| |||||:|||||:|@LB@ ACG UG GUUGUUGUGUUGU@LB@3'-UUU...GGUUA UU U AGUGU...UCA-5'@LB@ | |@LB@ 77 38@LB@@LB@@LB@Energy -21.71 kcal/mol@LB@Hybridization Energy -20.6082 kcal/mol@LB@Unfolding Energy - mRNA 2.86044 kcal/mol@LB@Unfolding Energy - sRNA 3.80854 kcal/mol@LB@@LB@Position - mRNA 31 -- 67@LB@Position - sRNA 39 -- 76@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 71 -- 77@LB@ |
34 |
0.001111 |
0.1164 |
stm2746 |
N/A |
-14.94 |
0.120804 |
53 -- 101 |
36 -- 90 |
putative excinuclease ATPase subunit |
stm4494 stm3753 |
_____________52_____________________102\n_____________|______________________|\n5'-GGA...UUGAA____UA_________U______UCAAG...AUG-3'\n______________GCAA__ACAACAACG__ACAUU\n______________||||__||||||||:__||||:\n______________CGUU__UGUUGUUGU__UGUAG\n3'-UUU...GUUAA____UG_________GU_____UGUUG...UCA-5'\n_____________|______________________|\n_____________91_____________________35\n |
61 -- 67 |
76 -- 82 |
-20.4267 kcal/mol |
3.3222 kcal/mol |
4.33922 kcal/mol |
52 102@LB@ | |@LB@5'-GGA...UUGAA UA U UCAAG...AUG-3'@LB@ GCAA ACAACAACG ACAUU@LB@ |||| ||||||||: ||||:@LB@ CGUU UGUUGUUGU UGUAG@LB@3'-UUU...GUUAA UG GU UGUUG...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -14.94 kcal/mol@LB@Hybridization Energy -20.4267 kcal/mol@LB@Unfolding Energy - mRNA 3.3222 kcal/mol@LB@Unfolding Energy - sRNA 4.33922 kcal/mol@LB@@LB@Position - mRNA 53 -- 101@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 76 -- 82@LB@ |
35 |
0.001151 |
0.1171 |
stm1336 |
rplT |
-16.07 |
0.079235 |
51 -- 96 |
49 -- 98 |
50S ribosomal protein L20 |
|
_____________50_________________________________________97\n_____________|__________________________________________|\n5'-ACC...AAAAA______UA____UA__________CUG_______________AUGGU...GCG-3'\n______________GC_GAC__AACG____AACGUCAC___CGU___CCGAAAGCC\n______________||_:||__|||:____|||:||||___|||___||:||||||\n______________CG_UUG__UUGU____UUGUAGUG___GCA___GGUUUUCGG\n3'-UUU...GUUAA__U___UG____UGUG________UUG___UUC_________GUAGU...UCA-5'\n_____________|__________________________________________|\n_____________99_________________________________________48\n |
75 -- 81 |
67 -- 73 |
-32.5949 kcal/mol |
8.04744 kcal/mol |
15.2217 kcal/mol |
50 97@LB@ | |@LB@5'-ACC...AAAAA UA UA CUG AUGGU...GCG-3'@LB@ GC GAC AACG AACGUCAC CGU CCGAAAGCC@LB@ || :|| |||: |||:|||| ||| ||:||||||@LB@ CG UUG UUGU UUGUAGUG GCA GGUUUUCGG@LB@3'-UUU...GUUAA U UG UGUG UUG UUC GUAGU...UCA-5'@LB@ | |@LB@ 99 48@LB@@LB@@LB@Energy -16.07 kcal/mol@LB@Hybridization Energy -32.5949 kcal/mol@LB@Unfolding Energy - mRNA 8.04744 kcal/mol@LB@Unfolding Energy - sRNA 15.2217 kcal/mol@LB@@LB@Position - mRNA 51 -- 96@LB@Position - sRNA 49 -- 98@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 67 -- 73@LB@ |
38 |
0.001379 |
0.1215 |
stm0150 |
aroP |
-12.21 |
0.313123 |
213 -- 232 |
63 -- 83 |
APC family aromatic amino acid transporter |
|
_____________212_________________________233\n_____________|___________________________|\n5'-CAU...UGAUG____GU_____________A_______CAAGC...UGU-3'\n______________GACA__CAGCAGCACGGCG__GCAGCU\n______________:|||__||:||:|||::|:__:||:|:\n______________UUGU__GUUGUUGUGUUGU__UGUUGG\n3'-UUU...AACGU___________________AG______CAUUC...UCA-5'\n_____________|___________________________|\n_____________84__________________________62\n |
219 -- 225 |
71 -- 77 |
-26.8853 kcal/mol |
7.73214 kcal/mol |
8.28637 kcal/mol |
212 233@LB@ | |@LB@5'-CAU...UGAUG GU A CAAGC...UGU-3'@LB@ GACA CAGCAGCACGGCG GCAGCU@LB@ :||| ||:||:|||::|: :||:|:@LB@ UUGU GUUGUUGUGUUGU UGUUGG@LB@3'-UUU...AACGU AG CAUUC...UCA-5'@LB@ | |@LB@ 84 62@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -26.8853 kcal/mol@LB@Unfolding Energy - mRNA 7.73214 kcal/mol@LB@Unfolding Energy - sRNA 8.28637 kcal/mol@LB@@LB@Position - mRNA 213 -- 232@LB@Position - sRNA 63 -- 83@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 71 -- 77@LB@ |
42 |
0.001433 |
0.1215 |
stm1318 |
katE |
-13.62 |
0.194137 |
191 -- 230 |
43 -- 82 |
catalase HPII |
|
_____________190_________231\n_____________|___________|\n5'-GGC...UCUGC___________UCCCC...AUC-3'\n______________CGUUCCG_CUC\n______________|||||||_|||\n______________GCAAGGC_GAG\n3'-UUU...GAAAA_______C___UCCUUCA-5'\n_____________|___________|\n_____________83__________42\n |
99 -- 105 |
12 -- 18 |
-14.968 kcal/mol |
1.4568 kcal/mol |
6.53351 kcal/mol |
190 231@LB@ | |@LB@5'-GGC...UCUGC UCCCC...AUC-3'@LB@ CGUUCCG CUC@LB@ ||||||| |||@LB@ GCAAGGC GAG@LB@3'-UUU...GAAAA C UCCUUCA-5'@LB@ | |@LB@ 83 42@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -14.968 kcal/mol@LB@Unfolding Energy - mRNA 1.4568 kcal/mol@LB@Unfolding Energy - sRNA 6.53351 kcal/mol@LB@@LB@Position - mRNA 191 -- 230@LB@Position - sRNA 43 -- 82@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 12 -- 18@LB@ |
37 |
0.001263 |
0.1215 |
stm2511 |
guaB |
-22.14 |
0.007548 |
255 -- 298 |
35 -- 73 |
IMP dehydrogenase |
|
_____________254___________________________________________299\n_____________|_____________________________________________|\n5'-GGC...UUCCC_______UCC_____UUU______UACU___G___UC________GU-3'\n______________GC_UCAC___ACCGU___GCCGAA____GCC_AUC__AGCACGCA\n______________:|_||||___|||||___|||:||____|||_|||__|:||||||\n______________UG_AGUG___UGGCA___CGGUUU____CGG_UAG__UUGUGCGU\n3'-UUU...UGUGU__U____U_______UU_______U______G___UC________AAGGC...UCA-5'\n_____________|_____________________________________________|\n_____________74____________________________________________34\n |
292 -- 298 |
35 -- 41 |
-39.0524 kcal/mol |
5.99157 kcal/mol |
19.7557 kcal/mol |
254 299@LB@ | |@LB@5'-GGC...UUCCC UCC UUU UACU G UC GU-3'@LB@ GC UCAC ACCGU GCCGAA GCC AUC AGCACGCA@LB@ :| |||| ||||| |||:|| ||| ||| |:||||||@LB@ UG AGUG UGGCA CGGUUU CGG UAG UUGUGCGU@LB@3'-UUU...UGUGU U U UU U G UC AAGGC...UCA-5'@LB@ | |@LB@ 74 34@LB@@LB@@LB@Energy -22.14 kcal/mol@LB@Hybridization Energy -39.0524 kcal/mol@LB@Unfolding Energy - mRNA 5.99157 kcal/mol@LB@Unfolding Energy - sRNA 19.7557 kcal/mol@LB@@LB@Position - mRNA 255 -- 298@LB@Position - sRNA 35 -- 73@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 35 -- 41@LB@ |
36 |
0.00125 |
0.1215 |
stm3523 |
glpR |
-16.55 |
0.065942 |
207 -- 266 |
37 -- 89 |
DeoR/GlpR family transcriptional regulator |
|
_____________206________________267\n_____________|__________________|\n5'-UUG...UGAAA__________________GCGAU...CGC-3'\n______________CAAACACAACGGCAUGAC\n______________||||||||||::||::||\n______________GUUUGUGUUGUUGUGUUG\n3'-UUU...UUAAC__________________UAGUG...UCA-5'\n_____________|__________________|\n_____________90_________________36\n |
218 -- 224 |
72 -- 78 |
-24.6143 kcal/mol |
5.8046 kcal/mol |
3.79561 kcal/mol |
206 267@LB@ | |@LB@5'-UUG...UGAAA GCGAU...CGC-3'@LB@ CAAACACAACGGCAUGAC@LB@ ||||||||||::||::||@LB@ GUUUGUGUUGUUGUGUUG@LB@3'-UUU...UUAAC UAGUG...UCA-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -16.55 kcal/mol@LB@Hybridization Energy -24.6143 kcal/mol@LB@Unfolding Energy - mRNA 5.8046 kcal/mol@LB@Unfolding Energy - sRNA 3.79561 kcal/mol@LB@@LB@Position - mRNA 207 -- 266@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 72 -- 78@LB@ |
41 |
0.001426 |
0.1215 |
stm3718 |
rfaI |
-15.09 |
0.114319 |
193 -- 209 |
157 -- 173 |
lipopolysaccharide 1 3-galactosyltransferase |
stm3717 |
_____________192_______________210\n_____________|_________________|\n5'-AUG...AAAAG___________A_____AAAUA...GGA-3'\n______________UGAUCACUAUG_GCAGA\n______________|:|||||||||_:||||\n______________AUUAGUGAUAC_UGUCU\n3'-UUU...AUGUA___________C_____GUCCC...UCA-5'\n_____________|_________________|\n_____________174_______________156\n |
197 -- 203 |
163 -- 169 |
-20.9664 kcal/mol |
2.81615 kcal/mol |
3.98136 kcal/mol |
192 210@LB@ | |@LB@5'-AUG...AAAAG A AAAUA...GGA-3'@LB@ UGAUCACUAUG GCAGA@LB@ |:||||||||| :||||@LB@ AUUAGUGAUAC UGUCU@LB@3'-UUU...AUGUA C GUCCC...UCA-5'@LB@ | |@LB@ 174 156@LB@@LB@@LB@Energy -15.09 kcal/mol@LB@Hybridization Energy -20.9664 kcal/mol@LB@Unfolding Energy - mRNA 2.81615 kcal/mol@LB@Unfolding Energy - sRNA 3.98136 kcal/mol@LB@@LB@Position - mRNA 193 -- 209@LB@Position - sRNA 157 -- 173@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 163 -- 169@LB@ |