| 11 |
0.000438 |
0.1262 |
b0467 |
priC |
-14.72 |
0.009297 |
1 -- 37 |
32 -- 65 |
primosomal replication protein N'' |
|
______________1____________________________________38\n______________|____________________________________|\n___________5'-______GAACG_____A___CCA___CG_________UAAAC...GUU-3'\n______________GGGGAA_____GGCAA_GCA___GGC__CCAGCAGGA\n______________||::||_____|||||_|||___|||__|||:|||:|\n______________CCUUUU_____CCGUU_CGU___CCG__GGUUGUCUU\n3'-UUU...UACAA______AGUCA_____A___UA_______________UUAUU...UUG-5'\n_____________|_____________________________________|\n_____________66____________________________________31\n |
30 -- 36 |
33 -- 39 |
-34.0772 kcal/mol |
8.3902 kcal/mol |
10.9649 kcal/mol |
1 38@LB@ | |@LB@ 5'- GAACG A CCA CG UAAAC...GUU-3'@LB@ GGGGAA GGCAA GCA GGC CCAGCAGGA@LB@ ||::|| ||||| ||| ||| |||:|||:|@LB@ CCUUUU CCGUU CGU CCG GGUUGUCUU@LB@3'-UUU...UACAA AGUCA A UA UUAUU...UUG-5'@LB@ | |@LB@ 66 31@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -34.0772 kcal/mol@LB@Unfolding Energy - mRNA 8.3902 kcal/mol@LB@Unfolding Energy - sRNA 10.9649 kcal/mol@LB@@LB@Position - mRNA 1 -- 37@LB@Position - sRNA 32 -- 65@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 122 |
0.01263 |
0.3462 |
b0537 |
intD |
-10.49 |
0.096065 |
54 -- 80 |
48 -- 76 |
DLP12 prophage; putative phage integrase |
|
_____________53____________________________81\n_____________|_____________________________|\n5'-GAG...AUUGG____________________A________ACGCA...AAG-3'\n______________UUUUGUAU_UUGGGGAG_CA_UGGCGAUG\n______________||||:|||_||||::|:_||_||||:|||\n______________AAAAUAUA_AACCUUUU_GU_ACCGUUAC\n3'-UUU...ACAGA________C________A__C________GUUAC...UUG-5'\n_____________|_____________________________|\n_____________77____________________________47\n |
74 -- 80 |
48 -- 54 |
-25.3626 kcal/mol |
9.83015 kcal/mol |
5.0412 kcal/mol |
53 81@LB@ | |@LB@5'-GAG...AUUGG A ACGCA...AAG-3'@LB@ UUUUGUAU UUGGGGAG CA UGGCGAUG@LB@ ||||:||| ||||::|: || ||||:|||@LB@ AAAAUAUA AACCUUUU GU ACCGUUAC@LB@3'-UUU...ACAGA C A C GUUAC...UUG-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -25.3626 kcal/mol@LB@Unfolding Energy - mRNA 9.83015 kcal/mol@LB@Unfolding Energy - sRNA 5.0412 kcal/mol@LB@@LB@Position - mRNA 54 -- 80@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 164 |
0.01912 |
0.392 |
b0585 |
fes |
-11.27 |
0.064985 |
233 -- 253 |
39 -- 56 |
enterobactin/ferrienterobactin esterase |
|
_____________232____________________254\n_____________|______________________|\n5'-CAU...AGCUG____________AACA______GGAAU...GGU-3'\n______________GUGGCAGU_CGA____UGGCCC\n______________||||||:|_|:|____||||||\n______________CACCGUUA_GUU____ACCGGG\n3'-UUU...UUAGU________C_____________UUGUC...UUG-5'\n_____________|______________________|\n_____________57_____________________38\n |
234 -- 240 |
49 -- 55 |
-24.6014 kcal/mol |
8.56812 kcal/mol |
4.76336 kcal/mol |
232 254@LB@ | |@LB@5'-CAU...AGCUG AACA GGAAU...GGU-3'@LB@ GUGGCAGU CGA UGGCCC@LB@ ||||||:| |:| ||||||@LB@ CACCGUUA GUU ACCGGG@LB@3'-UUU...UUAGU C UUGUC...UUG-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -24.6014 kcal/mol@LB@Unfolding Energy - mRNA 8.56812 kcal/mol@LB@Unfolding Energy - sRNA 4.76336 kcal/mol@LB@@LB@Position - mRNA 233 -- 253@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 165 |
0.01953 |
0.3981 |
b0603 |
ybdO |
-12.89 |
0.027143 |
166 -- 206 |
40 -- 73 |
putative DNA-binding transcriptional regulator |
|
_____________165_________________________________________207\n_____________|___________________________________________|\n5'-UCA...GUGAA_____CA_______AAAAUAUAAC___A_______________AAUCU...CAC-3'\n______________UAUAU__UGGAAGA__________CGG__GUAGUGUA_UGGCC\n______________|||||__|||||:|__________|:|__|:|:||:|_|||||\n______________AUAUA__ACCUUUU__________GUC__CGUUACGU_ACCGG\n3'-UUU...GAAAA_____CA_______A____________AC________U_____GUUGU...UUG-5'\n_____________|___________________________________________|\n_____________74__________________________________________39\n |
195 -- 201 |
46 -- 52 |
-24.6879 kcal/mol |
4.92423 kcal/mol |
6.86861 kcal/mol |
165 207@LB@ | |@LB@5'-UCA...GUGAA CA AAAAUAUAAC A AAUCU...CAC-3'@LB@ UAUAU UGGAAGA CGG GUAGUGUA UGGCC@LB@ ||||| |||||:| |:| |:|:||:| |||||@LB@ AUAUA ACCUUUU GUC CGUUACGU ACCGG@LB@3'-UUU...GAAAA CA A AC U GUUGU...UUG-5'@LB@ | |@LB@ 74 39@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -24.6879 kcal/mol@LB@Unfolding Energy - mRNA 4.92423 kcal/mol@LB@Unfolding Energy - sRNA 6.86861 kcal/mol@LB@@LB@Position - mRNA 166 -- 206@LB@Position - sRNA 40 -- 73@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 60 |
0.004583 |
0.2539 |
b0674 |
asnB |
-9.07 |
0.186262 |
281 -- 298 |
39 -- 51 |
asparagine synthetase B |
|
_____________280________________299\n_____________|__________________|\n5'-ACA...CGCCU______UCAUC_______GG-3'\n______________GAUGCG_____GUGGCCC\n______________:||||:_____:||||||\n______________UUACGU_____UACCGGG\n3'-UUU...CACCG__________________UUGUC...UUG-5'\n_____________|__________________|\n_____________52_________________38\n |
292 -- 298 |
39 -- 45 |
-18.7239 kcal/mol |
4.90882 kcal/mol |
4.74571 kcal/mol |
280 299@LB@ | |@LB@5'-ACA...CGCCU UCAUC GG-3'@LB@ GAUGCG GUGGCCC@LB@ :||||: :||||||@LB@ UUACGU UACCGGG@LB@3'-UUU...CACCG UUGUC...UUG-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -9.07 kcal/mol@LB@Hybridization Energy -18.7239 kcal/mol@LB@Unfolding Energy - mRNA 4.90882 kcal/mol@LB@Unfolding Energy - sRNA 4.74571 kcal/mol@LB@@LB@Position - mRNA 281 -- 298@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 99 |
0.009334 |
0.3118 |
b0675 |
umpH |
-9.49 |
0.153954 |
143 -- 172 |
39 -- 66 |
UMP phosphatase |
|
_____________142____________________________173\n_____________|______________________________|\n5'-AGC...UUUGC__________A__U__UUUUA_______G_UUAUU...AUA-3'\n______________UGGAAAAUUA_UG_GC_____UAGUGGC_C\n______________||||||||:|_||_||_____:|:||||_|\n______________ACCUUUUAGU_AC_CG_____GUUACCG_G\n3'-UUU...AUACA__________C_____UUAC________G_UUGUC...UUG-5'\n_____________|______________________________|\n_____________67_____________________________38\n |
145 -- 151 |
58 -- 64 |
-25.171 kcal/mol |
9.00393 kcal/mol |
6.67256 kcal/mol |
142 173@LB@ | |@LB@5'-AGC...UUUGC A U UUUUA G UUAUU...AUA-3'@LB@ UGGAAAAUUA UG GC UAGUGGC C@LB@ ||||||||:| || || :|:|||| |@LB@ ACCUUUUAGU AC CG GUUACCG G@LB@3'-UUU...AUACA C UUAC G UUGUC...UUG-5'@LB@ | |@LB@ 67 38@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -25.171 kcal/mol@LB@Unfolding Energy - mRNA 9.00393 kcal/mol@LB@Unfolding Energy - sRNA 6.67256 kcal/mol@LB@@LB@Position - mRNA 143 -- 172@LB@Position - sRNA 39 -- 66@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 166 |
0.01968 |
0.3987 |
b0784 |
moaD |
-8.29 |
0.259720 |
116 -- 144 |
39 -- 53 |
molybdopterin synthase small subunit |
|
_____________115___________________________145\n_____________|_____________________________|\n5'-GCA...GCAAA_________AAAGAUAUGGUGAU______GGUAC...AGC-3'\n______________GCGGUGCAA______________UGGUCC\n______________||::|||||______________|||:||\n______________CGUUACGUU______________ACCGGG\n3'-UUU...GUCAC_____________________________UUGUC...UUG-5'\n_____________|_____________________________|\n_____________54____________________________38\n |
118 -- 124 |
45 -- 51 |
-19.827 kcal/mol |
6.7839 kcal/mol |
4.75794 kcal/mol |
115 145@LB@ | |@LB@5'-GCA...GCAAA AAAGAUAUGGUGAU GGUAC...AGC-3'@LB@ GCGGUGCAA UGGUCC@LB@ ||::||||| |||:||@LB@ CGUUACGUU ACCGGG@LB@3'-UUU...GUCAC UUGUC...UUG-5'@LB@ | |@LB@ 54 38@LB@@LB@@LB@Energy -8.29 kcal/mol@LB@Hybridization Energy -19.827 kcal/mol@LB@Unfolding Energy - mRNA 6.7839 kcal/mol@LB@Unfolding Energy - sRNA 4.75794 kcal/mol@LB@@LB@Position - mRNA 116 -- 144@LB@Position - sRNA 39 -- 53@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 83 |
0.007014 |
0.2822 |
b0815 |
opgE |
-11.11 |
0.070482 |
164 -- 204 |
2 -- 58 |
OPG biosynthetic transmembrane phosphoethanolamine transferase |
|
_____________163________________________________________________________205\n_____________|__________________________________________________________|\n5'-UUU...GACGC_____________C__________________________U_______U_________AUUUA...GCU-3'\n______________CAG_GGUAA_GCA_AUGGC_______________GUUUGU_ACGAUAG_GGCAUAUGA\n______________|||_||:||_|||_|||||_______________:|:|||_||:|||:_|||||||:|\n______________GUC_CCGUU_CGU_UACCG_______________UAGACA_UGUUAUU_CCGUAUAUU\n3'-UUU...UUUUA___A_____A_________GGUUGUCUUUUAUUU______C_______U_________G-5'\n_____________|__________________________________________________________|\n_____________59_________________________________________________________1\n |
197 -- 203 |
3 -- 9 |
-40.5172 kcal/mol |
17.2586 kcal/mol |
12.1475 kcal/mol |
163 205@LB@ | |@LB@5'-UUU...GACGC C U U AUUUA...GCU-3'@LB@ CAG GGUAA GCA AUGGC GUUUGU ACGAUAG GGCAUAUGA@LB@ ||| ||:|| ||| ||||| :|:||| ||:|||: |||||||:|@LB@ GUC CCGUU CGU UACCG UAGACA UGUUAUU CCGUAUAUU@LB@3'-UUU...UUUUA A A GGUUGUCUUUUAUUU C U G-5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -40.5172 kcal/mol@LB@Unfolding Energy - mRNA 17.2586 kcal/mol@LB@Unfolding Energy - sRNA 12.1475 kcal/mol@LB@@LB@Position - mRNA 164 -- 204@LB@Position - sRNA 2 -- 58@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 69 |
0.005697 |
0.2777 |
b0829 |
gsiA |
-9.42 |
0.158982 |
246 -- 287 |
28 -- 64 |
glutathione ABC transporter ATPase |
|
_____________245__________________________________________288\n_____________|____________________________________________|\n5'-CGG...CGGUU_______UGAAUAUU__CUUU_________A_____________GCUGC...GCA-3'\n______________GAAAAUC________GC____AUGCA__GG_CCAGCAGAAAAUA\n______________|||||||________||____|||||__||_|||:|||||||||\n______________CUUUUAG________CG____UACGU__CC_GGUUGUCUUUUAU\n3'-UUU...ACAAC_______UCAC______U________UA__G_____________UUUAG...UUG-5'\n_____________|____________________________________________|\n_____________65___________________________________________27\n |
246 -- 252 |
58 -- 64 |
-27.8415 kcal/mol |
7.44564 kcal/mol |
10.972 kcal/mol |
245 288@LB@ | |@LB@5'-CGG...CGGUU UGAAUAUU CUUU A GCUGC...GCA-3'@LB@ GAAAAUC GC AUGCA GG CCAGCAGAAAAUA@LB@ ||||||| || ||||| || |||:|||||||||@LB@ CUUUUAG CG UACGU CC GGUUGUCUUUUAU@LB@3'-UUU...ACAAC UCAC U UA G UUUAG...UUG-5'@LB@ | |@LB@ 65 27@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -27.8415 kcal/mol@LB@Unfolding Energy - mRNA 7.44564 kcal/mol@LB@Unfolding Energy - sRNA 10.972 kcal/mol@LB@@LB@Position - mRNA 246 -- 287@LB@Position - sRNA 28 -- 64@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 107 |
0.009921 |
0.3118 |
b0836 |
bssR |
-14.44 |
0.011050 |
12 -- 65 |
14 -- 65 |
repressor of biofilm formation by indole transport regulation |
|
_____________11____________________________________________________________66\n_____________|_____________________________________________________________|\n5'-AUU...UUACA_____G___________________A___U______UUCUG____________AUC_____CUCAU...ACA-3'\n______________GGAAA_GUCAG_GGCAG______GG_UUC_ACAGAG_____GAUAAAAUUUGU___GCAAU\n______________|||||_:||||_||||:______||_::|_|||||:_____:|||||||:|||___:||||\n______________CCUUU_UAGUC_CCGUU______CC_GGG_UGUCUU_____UUAUUUUAGACA___UGUUA\n3'-UUU...UACAA___________A_____ACGUUA______U_______________________C_______UUUCC...UUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________13\n |
46 -- 52 |
25 -- 31 |
-37.4064 kcal/mol |
11.8508 kcal/mol |
11.1173 kcal/mol |
11 66@LB@ | |@LB@5'-AUU...UUACA G A U UUCUG AUC CUCAU...ACA-3'@LB@ GGAAA GUCAG GGCAG GG UUC ACAGAG GAUAAAAUUUGU GCAAU@LB@ ||||| :|||| ||||: || ::| |||||: :|||||||:||| :||||@LB@ CCUUU UAGUC CCGUU CC GGG UGUCUU UUAUUUUAGACA UGUUA@LB@3'-UUU...UACAA A ACGUUA U C UUUCC...UUG-5'@LB@ | |@LB@ 66 13@LB@@LB@@LB@Energy -14.44 kcal/mol@LB@Hybridization Energy -37.4064 kcal/mol@LB@Unfolding Energy - mRNA 11.8508 kcal/mol@LB@Unfolding Energy - sRNA 11.1173 kcal/mol@LB@@LB@Position - mRNA 12 -- 65@LB@Position - sRNA 14 -- 65@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 25 -- 31@LB@ |
