25 |
0.0009834 |
0.1361 |
b3733 |
atpG |
-13.27 |
0.068654 |
183 -- 205 |
1 -- 22 |
F1 sector of membrane-bound ATP synthase gamma subunit |
|
_____________182_____________________206\n_____________|_______________________|\n5'-GGC...CGCAA________________UCA____CGGCG...GUA-3'\n______________GGCAUUGAGGAGAAGC___UGGC\n______________|:|||::|:||:||||___||||\n______________CUGUAGUUUCUUUUCG___ACCG\n3'-UUU...UACCC________________UC_____-5'\n_____________|______________________|\n_____________23_____________________1\n |
192 -- 198 |
7 -- 13 |
-25.5897 kcal/mol |
10.7799 kcal/mol |
1.54023 kcal/mol |
182 206@LB@ | |@LB@5'-GGC...CGCAA UCA CGGCG...GUA-3'@LB@ GGCAUUGAGGAGAAGC UGGC@LB@ |:|||::|:||:|||| ||||@LB@ CUGUAGUUUCUUUUCG ACCG@LB@3'-UUU...UACCC UC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -25.5897 kcal/mol@LB@Unfolding Energy - mRNA 10.7799 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
28 |
0.001242 |
0.1512 |
b0879 |
macB |
-8.34 |
0.466885 |
135 -- 159 |
1 -- 22 |
macrolide ABC transporter peremase/ATPase |
|
_____________134_________________________160\n_____________|___________________________|\n5'-AAU...GUUGA__U_________GCUU___________GAUGA...CGG-3'\n______________GA_UGUCAAAGG____GAAGC_G_GGC\n______________||_::||||||:____:||||_|_|||\n______________CU_GUAGUUUCU____UUUCG_C_CCG\n3'-UUU...UACCC_____________________U_A___-5'\n_____________|__________________________|\n_____________23_________________________1\n |
140 -- 146 |
12 -- 18 |
-17.2972 kcal/mol |
7.41924 kcal/mol |
1.54023 kcal/mol |
134 160@LB@ | |@LB@5'-AAU...GUUGA U GCUU GAUGA...CGG-3'@LB@ GA UGUCAAAGG GAAGC G GGC@LB@ || ::||||||: :|||| | |||@LB@ CU GUAGUUUCU UUUCG C CCG@LB@3'-UUU...UACCC U A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -8.34 kcal/mol@LB@Hybridization Energy -17.2972 kcal/mol@LB@Unfolding Energy - mRNA 7.41924 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 135 -- 159@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 12 -- 18@LB@ |
31 |
0.001481 |
0.1635 |
b3468 |
yhhN |
-14.35 |
0.039524 |
32 -- 52 |
1 -- 21 |
TMEM86 family putative inner membrane protein |
|
_____________31____________________53\n_____________|_____________________|\n5'-CGA...UGAUA___A__________A______UUGCU...UAA-3'\n______________ACA_UAAAGAAAAG_GGUGGU\n______________|||_:|||||||||_:||||:\n______________UGU_GUUUCUUUUC_UCACCG\n3'-UUU...ACCCC___A__________G______-5'\n_____________|____________________|\n_____________22___________________1\n |
39 -- 45 |
8 -- 14 |
-21.1877 kcal/mol |
5.32481 kcal/mol |
1.51103 kcal/mol |
31 53@LB@ | |@LB@5'-CGA...UGAUA A A UUGCU...UAA-3'@LB@ ACA UAAAGAAAAG GGUGGU@LB@ ||| :||||||||| :||||:@LB@ UGU GUUUCUUUUC UCACCG@LB@3'-UUU...ACCCC A G -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -21.1877 kcal/mol@LB@Unfolding Energy - mRNA 5.32481 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 32 -- 52@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 8 -- 14@LB@ |
33 |
0.001538 |
0.1635 |
b4141 |
yjeH |
-13.95 |
0.048780 |
254 -- 275 |
1 -- 22 |
putative transporter |
|
_____________253____________________276\n_____________|______________________|\n5'-CAG...CUAUC_______UUAUU_____C____GUGUU...CUG-3'\n______________GACGUCA_____AGGCA_UGGC\n______________|||:|||_____|:|||_||||\n______________CUGUAGU_____UUCGU_ACCG\n3'-UUU...UACCC_______UUCUU_____C____-5'\n_____________|_____________________|\n_____________23____________________1\n |
254 -- 260 |
16 -- 22 |
-22.2624 kcal/mol |
6.77205 kcal/mol |
1.54023 kcal/mol |
253 276@LB@ | |@LB@5'-CAG...CUAUC UUAUU C GUGUU...CUG-3'@LB@ GACGUCA AGGCA UGGC@LB@ |||:||| |:||| ||||@LB@ CUGUAGU UUCGU ACCG@LB@3'-UUU...UACCC UUCUU C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -22.2624 kcal/mol@LB@Unfolding Energy - mRNA 6.77205 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 254 -- 275@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 16 -- 22@LB@ |
34 |
0.001647 |
0.1648 |
b1218 |
chaC |
-13.74 |
0.054411 |
171 -- 189 |
1 -- 17 |
cation transport regulator |
|
_____________170_________________190\n_____________|___________________|\n5'-AUA...UGUCG________UAU________GGAAG...CGC-3'\n______________CAGGGAAG___GCAGUGGC\n______________||::|||:___||||||||\n______________GUUUCUUU___CGUCACCG\n3'-UUU...CUGUA________U__________-5'\n_____________|__________________|\n_____________18_________________1\n |
183 -- 189 |
1 -- 7 |
-23.3292 kcal/mol |
8.15416 kcal/mol |
1.43853 kcal/mol |
170 190@LB@ | |@LB@5'-AUA...UGUCG UAU GGAAG...CGC-3'@LB@ CAGGGAAG GCAGUGGC@LB@ ||::|||: ||||||||@LB@ GUUUCUUU CGUCACCG@LB@3'-UUU...CUGUA U -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -13.74 kcal/mol@LB@Hybridization Energy -23.3292 kcal/mol@LB@Unfolding Energy - mRNA 8.15416 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 171 -- 189@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 1 -- 7@LB@ |
36 |
0.001784 |
0.1648 |
b0785 |
moaE |
-14.28 |
0.040953 |
241 -- 264 |
1 -- 21 |
molybdopterin synthase large subunit |
|
_____________240______________________265\n_____________|________________________|\n5'-AGA...GUUCA____A___________CCC_____UGGCG...CCU-3'\n______________GCGU_GGAGAAGAGUA___GUGGC\n______________:|:|_::||||:||:|___|||||\n______________UGUA_UUUCUUUUCGU___CACCG\n3'-UUU...ACCCC____G___________________-5'\n_____________|_______________________|\n_____________22______________________1\n |
250 -- 256 |
6 -- 12 |
-21.7367 kcal/mol |
5.94077 kcal/mol |
1.51103 kcal/mol |
240 265@LB@ | |@LB@5'-AGA...GUUCA A CCC UGGCG...CCU-3'@LB@ GCGU GGAGAAGAGUA GUGGC@LB@ :|:| ::||||:||:| |||||@LB@ UGUA UUUCUUUUCGU CACCG@LB@3'-UUU...ACCCC G -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.28 kcal/mol@LB@Hybridization Energy -21.7367 kcal/mol@LB@Unfolding Energy - mRNA 5.94077 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 241 -- 264@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 6 -- 12@LB@ |
37 |
0.001785 |
0.1648 |
b3933 |
ftsN |
-15.64 |
0.019200 |
24 -- 52 |
1 -- 29 |
essential cell division protein |
|
_____________23______________________________53\n_____________|_______________________________|\n5'-AGC...UGAUC_____CA______A__CGUU___________UCUCG...CUC-3'\n______________AAAUG__GGGGCA_CA______GGCAGUGGC\n______________|||||__|||:||_||______:||||||||\n______________UUUAC__CCCUGU_GU______UCGUCACCG\n3'-UUU...GGUGU_____________A__UUCUUU_________-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
46 -- 52 |
1 -- 7 |
-29.0551 kcal/mol |
10.8938 kcal/mol |
2.51907 kcal/mol |
23 53@LB@ | |@LB@5'-AGC...UGAUC CA A CGUU UCUCG...CUC-3'@LB@ AAAUG GGGGCA CA GGCAGUGGC@LB@ ||||| |||:|| || :||||||||@LB@ UUUAC CCCUGU GU UCGUCACCG@LB@3'-UUU...GGUGU A UUCUUU -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -15.64 kcal/mol@LB@Hybridization Energy -29.0551 kcal/mol@LB@Unfolding Energy - mRNA 10.8938 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 24 -- 52@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 1 -- 7@LB@ |
38 |
0.001836 |
0.1648 |
b3188 |
sfsB |
-13.60 |
0.058336 |
253 -- 274 |
1 -- 32 |
malPQ operon transcriptional activator |
|
_____________252______________________________275\n_____________|________________________________|\n5'-CGG...UUUGC______A___A_____________________GGCGG...UGA-3'\n______________GCAAGA_GGG_ACGUCAA__________UGGC\n______________:|||:|_|||_||:||||__________||||\n______________UGUUUU_CCC_UGUAGUU__________ACCG\n3'-UUU...CGAGG______A___C_______UCUUUUCGUC____-5'\n_____________|_______________________________|\n_____________33______________________________1\n |
264 -- 270 |
15 -- 21 |
-21.5209 kcal/mol |
5.38314 kcal/mol |
2.53929 kcal/mol |
252 275@LB@ | |@LB@5'-CGG...UUUGC A A GGCGG...UGA-3'@LB@ GCAAGA GGG ACGUCAA UGGC@LB@ :|||:| ||| ||:|||| ||||@LB@ UGUUUU CCC UGUAGUU ACCG@LB@3'-UUU...CGAGG A C UCUUUUCGUC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -21.5209 kcal/mol@LB@Unfolding Energy - mRNA 5.38314 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 253 -- 274@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 15 -- 21@LB@ |
39 |
0.001912 |
0.1648 |
b2532 |
trmJ |
-14.54 |
0.035636 |
97 -- 121 |
1 -- 23 |
tRNA mC32 mU32 2'-O-methyltransferase SAM-dependent |
|
_____________96________________________122\n_____________|_________________________|\n5'-CGU...UCACU_____________C__G_AAAC___GCAGA...UGU-3'\n______________GGAUGUUAAAGAA_GG_A____GGC\n______________|||::|:||||||_:|_|____|||\n______________CCUGUAGUUUCUU_UC_U____CCG\n3'-UUU...UUACC_____________U__G_CA_____-5'\n_____________|________________________|\n_____________24_______________________1\n |
103 -- 109 |
11 -- 17 |
-19.8008 kcal/mol |
3.67656 kcal/mol |
1.57928 kcal/mol |
96 122@LB@ | |@LB@5'-CGU...UCACU C G AAAC GCAGA...UGU-3'@LB@ GGAUGUUAAAGAA GG A GGC@LB@ |||::|:|||||| :| | |||@LB@ CCUGUAGUUUCUU UC U CCG@LB@3'-UUU...UUACC U G CA -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -19.8008 kcal/mol@LB@Unfolding Energy - mRNA 3.67656 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 97 -- 121@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 11 -- 17@LB@ |
40 |
0.001973 |
0.1648 |
b1823 |
cspC |
-10.89 |
0.196769 |
199 -- 231 |
1 -- 29 |
stress protein member of the CspA-family |
|
_____________198_______________________________232\n_____________|_________________________________|\n5'-UAU...UUUUC______CAA_G________UC____UA______UCAAC...UCU-3'\n______________AAAUGG___A_AUUAAAGG__AGGU__AGUGGU\n______________||||||___|_||:||||:__|:|:__|||||:\n______________UUUACC___U_UAGUUUCU__UUCG__UCACCG\n3'-UUU...GGUGU______CC__G________U_____________-5'\n_____________|________________________________|\n_____________30_______________________________1\n |
210 -- 216 |
13 -- 19 |
-20.1954 kcal/mol |
6.78842 kcal/mol |
2.51907 kcal/mol |
198 232@LB@ | |@LB@5'-UAU...UUUUC CAA G UC UA UCAAC...UCU-3'@LB@ AAAUGG A AUUAAAGG AGGU AGUGGU@LB@ |||||| | ||:||||: |:|: |||||:@LB@ UUUACC U UAGUUUCU UUCG UCACCG@LB@3'-UUU...GGUGU CC G U -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -10.89 kcal/mol@LB@Hybridization Energy -20.1954 kcal/mol@LB@Unfolding Energy - mRNA 6.78842 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 199 -- 231@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 13 -- 19@LB@ |