166 |
0.006804 |
0.1439 |
b0475 |
hemH |
-7.56 |
0.197603 |
220 -- 228 |
1 -- 9 |
ferrochelatase |
|
_____________219_______229\n_____________|_________|\n5'-CGG...AACCG_________UGGCA...GCG-3'\n______________GUAUCCUGC\n______________|||:|||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
222 -- 228 |
1 -- 7 |
-12.5413 kcal/mol |
2.87943 kcal/mol |
2.12872 kcal/mol |
219 229@LB@ | |@LB@5'-CGG...AACCG UGGCA...GCG-3'@LB@ GUAUCCUGC@LB@ |||:|||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.56 kcal/mol@LB@Hybridization Energy -12.5413 kcal/mol@LB@Unfolding Energy - mRNA 2.87943 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 220 -- 228@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 1 -- 7@LB@ |
13 |
4.485e-05 |
0.01183 |
b0511 |
ybbW |
-13.60 |
0.002717 |
173 -- 210 |
18 -- 58 |
putative allantoin transporter |
|
_____________172________________________________________211\n_____________|__________________________________________|\n5'-UGG...ACGUU_______________AU____________UUU__________AGAGA...UUA-3'\n______________AUUCGA_UACGUGAA__UAAGAGG___GA___AUGGAACAUC\n______________||:|||_||||||||__|||:|||___||___||:|||||||\n______________UAGGCU_AUGCACUU__AUUUUCC___CU___UAUCUUGUAG\n3'-AUU...CGGUU______A________C________AGA__UUC__________AAUGG...AUG-5'\n_____________|__________________________________________|\n_____________59_________________________________________17\n |
204 -- 210 |
18 -- 24 |
-34.0515 kcal/mol |
8.25655 kcal/mol |
12.1809 kcal/mol |
172 211@LB@ | |@LB@5'-UGG...ACGUU AU UUU AGAGA...UUA-3'@LB@ AUUCGA UACGUGAA UAAGAGG GA AUGGAACAUC@LB@ ||:||| |||||||| |||:||| || ||:|||||||@LB@ UAGGCU AUGCACUU AUUUUCC CU UAUCUUGUAG@LB@3'-AUU...CGGUU A C AGA UUC AAUGG...AUG-5'@LB@ | |@LB@ 59 17@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -34.0515 kcal/mol@LB@Unfolding Energy - mRNA 8.25655 kcal/mol@LB@Unfolding Energy - sRNA 12.1809 kcal/mol@LB@@LB@Position - mRNA 173 -- 210@LB@Position - sRNA 18 -- 58@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 18 -- 24@LB@ |
33 |
0.0003369 |
0.03519 |
b0523 |
purE |
-12.01 |
0.010423 |
150 -- 160 |
3 -- 13 |
N5-carboxyaminoimidazole ribonucleotide mutase |
|
_____________149__________161\n_____________|____________|\n5'-UGG...GCUAU____________CUAAA...UGA-3'\n______________UCUCUGUGCCCU\n______________:||||||:||||\n______________GGAGACAUGGGA\n3'-AUU...AGAAU____________UG-5'\n_____________|____________|\n_____________14___________2\n |
154 -- 160 |
3 -- 9 |
-20.2448 kcal/mol |
2.89849 kcal/mol |
5.35591 kcal/mol |
149 161@LB@ | |@LB@5'-UGG...GCUAU CUAAA...UGA-3'@LB@ UCUCUGUGCCCU@LB@ :||||||:||||@LB@ GGAGACAUGGGA@LB@3'-AUU...AGAAU UG-5'@LB@ | |@LB@ 14 2@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -20.2448 kcal/mol@LB@Unfolding Energy - mRNA 2.89849 kcal/mol@LB@Unfolding Energy - sRNA 5.35591 kcal/mol@LB@@LB@Position - mRNA 150 -- 160@LB@Position - sRNA 3 -- 13@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 3 -- 9@LB@ |
110 |
0.003442 |
0.1101 |
b0528 |
ybcJ |
-8.36 |
0.126664 |
258 -- 272 |
21 -- 34 |
ribosome-associated protein; putative RNA-binding protein |
|
_____________257_____________273\n_____________|_______________|\n5'-AGG...UGAAA________C______GAAAG...CGA-3'\n______________CUGGAAGG_UGGAGC\n______________|||:|||:_|:||:|\n______________GACUUUCU_AUCUUG\n3'-AUU...UUCCA_______________UAGAA...AUG-5'\n_____________|_______________|\n_____________35______________20\n |
259 -- 265 |
27 -- 33 |
-15.4755 kcal/mol |
3.05057 kcal/mol |
4.02417 kcal/mol |
257 273@LB@ | |@LB@5'-AGG...UGAAA C GAAAG...CGA-3'@LB@ CUGGAAGG UGGAGC@LB@ |||:|||: |:||:|@LB@ GACUUUCU AUCUUG@LB@3'-AUU...UUCCA UAGAA...AUG-5'@LB@ | |@LB@ 35 20@LB@@LB@@LB@Energy -8.36 kcal/mol@LB@Hybridization Energy -15.4755 kcal/mol@LB@Unfolding Energy - mRNA 3.05057 kcal/mol@LB@Unfolding Energy - sRNA 4.02417 kcal/mol@LB@@LB@Position - mRNA 258 -- 272@LB@Position - sRNA 21 -- 34@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 27 -- 33@LB@ |
163 |
0.006545 |
0.1413 |
b0532 |
sfmD |
-7.71 |
0.181786 |
104 -- 132 |
48 -- 76 |
putative outer membrane export usher protein |
b3144 b4317 b0940 |
_____________103____________________________133\n_____________|______________________________|\n5'-UCA...GGAAA______________A___UUAA________GUUCA...GCU-3'\n______________GCUGAAAU_UUCAG_CCG____UGAUUAUG\n______________|||:||||_|||||_||:____:|||||:|\n______________CGAUUUUA_AAGUC_GGU____GCUAAUGC\n3'-AUU...CCCGC________U_________UUAG________ACUUC...AUG-5'\n_____________|______________________________|\n_____________77_____________________________47\n |
126 -- 132 |
48 -- 54 |
-23.9612 kcal/mol |
8.59534 kcal/mol |
7.67378 kcal/mol |
103 133@LB@ | |@LB@5'-UCA...GGAAA A UUAA GUUCA...GCU-3'@LB@ GCUGAAAU UUCAG CCG UGAUUAUG@LB@ |||:|||| ||||| ||: :|||||:|@LB@ CGAUUUUA AAGUC GGU GCUAAUGC@LB@3'-AUU...CCCGC U UUAG ACUUC...AUG-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -7.71 kcal/mol@LB@Hybridization Energy -23.9612 kcal/mol@LB@Unfolding Energy - mRNA 8.59534 kcal/mol@LB@Unfolding Energy - sRNA 7.67378 kcal/mol@LB@@LB@Position - mRNA 104 -- 132@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 48 -- 54@LB@ |
90 |
0.002406 |
0.09404 |
b0551 |
quuD |
-13.47 |
0.003063 |
177 -- 196 |
40 -- 58 |
DLP12 prophage; putative antitermination protein |
|
_____________176__________________197\n_____________|____________________|\n5'-ACU...UUCUG________UU__________GUUGA...GAU-3'\n______________GUCUGAUU__UGUGGAGUAA\n______________:||:||||__:|||:|||||\n______________UAGGCUAA__GCACUUCAUU\n3'-AUU...CGGUU________U___________UUCCA...AUG-5'\n_____________|____________________|\n_____________59___________________39\n |
190 -- 196 |
40 -- 46 |
-19.625 kcal/mol |
2.82746 kcal/mol |
3.34877 kcal/mol |
176 197@LB@ | |@LB@5'-ACU...UUCUG UU GUUGA...GAU-3'@LB@ GUCUGAUU UGUGGAGUAA@LB@ :||:|||| :|||:|||||@LB@ UAGGCUAA GCACUUCAUU@LB@3'-AUU...CGGUU U UUCCA...AUG-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -13.47 kcal/mol@LB@Hybridization Energy -19.625 kcal/mol@LB@Unfolding Energy - mRNA 2.82746 kcal/mol@LB@Unfolding Energy - sRNA 3.34877 kcal/mol@LB@@LB@Position - mRNA 177 -- 196@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 40 -- 46@LB@ |
61 |
0.0009386 |
0.05413 |
b0574 |
cusB |
-12.39 |
0.007718 |
27 -- 84 |
1 -- 59 |
copper/silver efflux system membrane fusion protein |
|
_____________26_____________________________________________________________85\n_____________|______________________________________________________________|\n5'-AAA...AUCAC______________CC_____CU__C_G____U__CCAU___C______A_________C__AGACG...AAA-3'\n______________GAUCCGAUUGC_UG__GUGAA__GG_C_GAGA_GA____GCG_UUUACC_UC___ACCC_GC\n______________:||||||||:|_||__||:||__||_|_||:|_||____:|:_:|||||_||___||||_:|\n______________UUAGGCUAAUG_AC__CAUUU__CC_G_CUUU_CU____UGU_GAAUGG_AG___UGGG_UG\n3'-AUU...UCGGU___________C__UU_____U___A_A_______AUCU___A_________ACA____A__-5'\n_____________|_____________________________________________________________|\n_____________60____________________________________________________________1\n |
31 -- 37 |
49 -- 55 |
-39.7476 kcal/mol |
14.6812 kcal/mol |
12.7027 kcal/mol |
26 85@LB@ | |@LB@5'-AAA...AUCAC CC CU C G U CCAU C A C AGACG...AAA-3'@LB@ GAUCCGAUUGC UG GUGAA GG C GAGA GA GCG UUUACC UC ACCC GC@LB@ :||||||||:| || ||:|| || | ||:| || :|: :||||| || |||| :|@LB@ UUAGGCUAAUG AC CAUUU CC G CUUU CU UGU GAAUGG AG UGGG UG@LB@3'-AUU...UCGGU C UU U A A AUCU A ACA A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -39.7476 kcal/mol@LB@Unfolding Energy - mRNA 14.6812 kcal/mol@LB@Unfolding Energy - sRNA 12.7027 kcal/mol@LB@@LB@Position - mRNA 27 -- 84@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 49 -- 55@LB@ |
182 |
0.007896 |
0.1519 |
b0686 |
ybfF |
-7.34 |
0.221050 |
164 -- 170 |
2 -- 8 |
acyl-CoA esterase |
|
_____________163_____171\n_____________|_______|\n5'-CUU...CAUAA_______ACCCG...GCG-3'\n______________UACCCUA\n______________|||||||\n______________AUGGGAU\n3'-AUU...GAGAC_______G-5'\n_____________|_______|\n_____________9_______1\n |
164 -- 170 |
2 -- 8 |
-9.7212 kcal/mol |
0.292492 kcal/mol |
2.11083 kcal/mol |
163 171@LB@ | |@LB@5'-CUU...CAUAA ACCCG...GCG-3'@LB@ UACCCUA@LB@ |||||||@LB@ AUGGGAU@LB@3'-AUU...GAGAC G-5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -7.34 kcal/mol@LB@Hybridization Energy -9.7212 kcal/mol@LB@Unfolding Energy - mRNA 0.292492 kcal/mol@LB@Unfolding Energy - sRNA 2.11083 kcal/mol@LB@@LB@Position - mRNA 164 -- 170@LB@Position - sRNA 2 -- 8@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 2 -- 8@LB@ |
7 |
1.5e-05 |
0.00754 |
b0720 |
gltA |
-8.97 |
0.087950 |
70 -- 79 |
4 -- 13 |
citrate synthase |
|
_____________69_________80\n_____________|__________|\n5'-CGG...CAGAG__________AGGUU...GUA-3'\n______________CUCUGUACCC\n______________||||||||||\n______________GAGACAUGGG\n3'-AUU...GAAUG__________AUG-5'\n_____________|__________|\n_____________14_________3\n |
73 -- 79 |
4 -- 10 |
-18.8657 kcal/mol |
4.79377 kcal/mol |
5.12835 kcal/mol |
69 80@LB@ | |@LB@5'-CGG...CAGAG AGGUU...GUA-3'@LB@ CUCUGUACCC@LB@ ||||||||||@LB@ GAGACAUGGG@LB@3'-AUU...GAAUG AUG-5'@LB@ | |@LB@ 14 3@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -18.8657 kcal/mol@LB@Unfolding Energy - mRNA 4.79377 kcal/mol@LB@Unfolding Energy - sRNA 5.12835 kcal/mol@LB@@LB@Position - mRNA 70 -- 79@LB@Position - sRNA 4 -- 13@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 4 -- 10@LB@ |
20 |
9.41e-05 |
0.01655 |
b0721 |
sdhC |
-12.56 |
0.006704 |
146 -- 157 |
4 -- 15 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________145__________158\n_____________|____________|\n5'-UCC...AGUUA____________GUAGU...CCG-3'\n______________ACCUCUGUGCCC\n______________||||||||:|||\n______________UGGAGACAUGGG\n3'-AUU...UAGAA____________AUG-5'\n_____________|____________|\n_____________16___________3\n |
151 -- 157 |
4 -- 10 |
-23.3451 kcal/mol |
4.99288 kcal/mol |
5.82084 kcal/mol |
145 158@LB@ | |@LB@5'-UCC...AGUUA GUAGU...CCG-3'@LB@ ACCUCUGUGCCC@LB@ ||||||||:|||@LB@ UGGAGACAUGGG@LB@3'-AUU...UAGAA AUG-5'@LB@ | |@LB@ 16 3@LB@@LB@@LB@Energy -12.56 kcal/mol@LB@Hybridization Energy -23.3451 kcal/mol@LB@Unfolding Energy - mRNA 4.99288 kcal/mol@LB@Unfolding Energy - sRNA 5.82084 kcal/mol@LB@@LB@Position - mRNA 146 -- 157@LB@Position - sRNA 4 -- 15@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 4 -- 10@LB@ |