21 |
0.001755 |
0.2633 |
b3037 |
ygiB |
-10.05 |
0.269263 |
126 -- 141 |
3 -- 15 |
DUF1190 family protein |
|
_____________125______________142\n_____________|________________|\n5'-AAA...UUCUU_______CUC______AUUUC...UGC-3'\n______________CCCCCUU___GCUUCA\n______________|||||||___||||||\n______________GGGGGAA___CGAAGU\n3'-UUU...CCCGU________________AG-5'\n_____________|________________|\n_____________16_______________2\n |
126 -- 132 |
9 -- 15 |
-20.0074 kcal/mol |
1.89647 kcal/mol |
7.00663 kcal/mol |
125 142@LB@ | |@LB@5'-AAA...UUCUU CUC AUUUC...UGC-3'@LB@ CCCCCUU GCUUCA@LB@ ||||||| ||||||@LB@ GGGGGAA CGAAGU@LB@3'-UUU...CCCGU AG-5'@LB@ | |@LB@ 16 2@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -20.0074 kcal/mol@LB@Unfolding Energy - mRNA 1.89647 kcal/mol@LB@Unfolding Energy - sRNA 7.00663 kcal/mol@LB@@LB@Position - mRNA 126 -- 141@LB@Position - sRNA 3 -- 15@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 9 -- 15@LB@ |
22 |
0.001812 |
0.2633 |
b2566 |
era |
-10.12 |
0.260747 |
283 -- 292 |
16 -- 26 |
membrane-associated 16S rRNA-binding GTPase |
|
_____________282________________293\n_____________|__________________|\n5'-UUG...AAUGA_________AA_______UGCGG...UCU-3'\n______________GCAUCGAUA___AGUUAC\n______________:||:|:|||___|||:||\n______________UGUGGUUAU___UCAGUG\n3'-UUU...UAAAA_________GAG______UGUAC...UAG-5'\n_____________|__________________|\n_____________27_________________15\n |
205 -- 211 |
181 -- 187 |
-15.5423 kcal/mol |
3.87874 kcal/mol |
4.86686 kcal/mol |
282 293@LB@ | |@LB@5'-UUG...AAUGA AA UGCGG...UCU-3'@LB@ GCAUCGAUA AGUUAC@LB@ :||:|:||| |||:||@LB@ UGUGGUUAU UCAGUG@LB@3'-UUU...UAAAA GAG UGUAC...UAG-5'@LB@ | |@LB@ 27 15@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -15.5423 kcal/mol@LB@Unfolding Energy - mRNA 3.87874 kcal/mol@LB@Unfolding Energy - sRNA 4.86686 kcal/mol@LB@@LB@Position - mRNA 283 -- 292@LB@Position - sRNA 16 -- 26@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 181 -- 187@LB@ |
23 |
0.00185 |
0.2633 |
b3492 |
yhiN |
-11.85 |
0.119629 |
108 -- 154 |
124 -- 161 |
putative oxidoreductase |
|
_____________107_______________________________________155\n_____________|_________________________________________|\n5'-CGG...GGAAA_____G______U____AUAG____________________AUGUU...AUA-3'\n______________GGUUU_AUGCCA_UAUU_____GCGC_UGGUGC_GGCGGGU\n______________|:|||_|::|||_||:|_____:|:|_||:|||_|||::||\n______________CUAAA_UGUGGU_AUGA_____UGUG_ACUACG_CCGUUCA\n3'-UUU...GCCCA_____A______U____GUCAG____U______U_______GUUGA...UAG-5'\n_____________|_________________________________________|\n_____________162_______________________________________123\n |
239 -- 245 |
153 -- 159 |
-35.0652 kcal/mol |
11.4478 kcal/mol |
11.9045 kcal/mol |
107 155@LB@ | |@LB@5'-CGG...GGAAA G U AUAG AUGUU...AUA-3'@LB@ GGUUU AUGCCA UAUU GCGC UGGUGC GGCGGGU@LB@ |:||| |::||| ||:| :|:| ||:||| |||::||@LB@ CUAAA UGUGGU AUGA UGUG ACUACG CCGUUCA@LB@3'-UUU...GCCCA A U GUCAG U U GUUGA...UAG-5'@LB@ | |@LB@ 162 123@LB@@LB@@LB@Energy -11.85 kcal/mol@LB@Hybridization Energy -35.0652 kcal/mol@LB@Unfolding Energy - mRNA 11.4478 kcal/mol@LB@Unfolding Energy - sRNA 11.9045 kcal/mol@LB@@LB@Position - mRNA 108 -- 154@LB@Position - sRNA 124 -- 161@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 153 -- 159@LB@ |
24 |
0.001922 |
0.2633 |
b3017 |
ftsP |
-19.79 |
0.002953 |
203 -- 291 |
63 -- 135 |
septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
|
_____________202__________________________________________________________________________________________292\n_____________|____________________________________________________________________________________________|\n5'-GAC...AAUAU_________GUCG__________A_________C__G______CACU_____CA______GUUCCCCUGAAG____________________AGCAA...CGC-3'\n______________GUCA_CUCA____GCGUCAGUUC_UUCAGGCAU_GG__GAUUG____UUGUG__GGCGCU____________GCCAGCGCAGCCGG_GCAAC\n______________||||_|:||____||:|||||:|_||||:||||_||__:||:|____|||||__|:||||____________:|||:||||:||:|_:||||\n______________CAGU_GGGU____CGUAGUCAGG_AAGUUCGUA_CC__UUAGC____AACAC__CUGCGA____________UGGUUGCGUUGGUC_UGUUG\n3'-UUU...AACGC____A____GA_________________________AA______________C_______AU________________________G_____AAGCG...UAG-5'\n_____________|____________________________________________________________________________________________|\n_____________136__________________________________________________________________________________________62\n |
278 -- 284 |
71 -- 77 |
-82.7619 kcal/mol |
32.3928 kcal/mol |
37.2191 kcal/mol |
202 292@LB@ | |@LB@5'-GAC...AAUAU GUCG A C G CACU CA GUUCCCCUGAAG AGCAA...CGC-3'@LB@ GUCA CUCA GCGUCAGUUC UUCAGGCAU GG GAUUG UUGUG GGCGCU GCCAGCGCAGCCGG GCAAC@LB@ |||| |:|| ||:|||||:| ||||:|||| || :||:| ||||| |:|||| :|||:||||:||:| :||||@LB@ CAGU GGGU CGUAGUCAGG AAGUUCGUA CC UUAGC AACAC CUGCGA UGGUUGCGUUGGUC UGUUG@LB@3'-UUU...AACGC A GA AA C AU G AAGCG...UAG-5'@LB@ | |@LB@ 136 62@LB@@LB@@LB@Energy -19.79 kcal/mol@LB@Hybridization Energy -82.7619 kcal/mol@LB@Unfolding Energy - mRNA 32.3928 kcal/mol@LB@Unfolding Energy - sRNA 37.2191 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 63 -- 135@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 71 -- 77@LB@ |
25 |
0.002009 |
0.2633 |
b0134 |
panB |
-9.88 |
0.290153 |
57 -- 67 |
176 -- 186 |
3-methyl-2-oxobutanoate hydroxymethyltransferase |
|
_____________56__________68\n_____________|___________|\n5'-CAG...AAAGC___________UCCAG...UUG-3'\n______________CACCAGUACUU\n______________|||||:||||:\n______________GUGGUUAUGAG\n3'-UUU...AAAAU___________UCAGU...UAG-5'\n_____________|___________|\n_____________187_________175\n |
61 -- 67 |
176 -- 182 |
-15.2136 kcal/mol |
0.973349 kcal/mol |
3.38772 kcal/mol |
56 68@LB@ | |@LB@5'-CAG...AAAGC UCCAG...UUG-3'@LB@ CACCAGUACUU@LB@ |||||:||||:@LB@ GUGGUUAUGAG@LB@3'-UUU...AAAAU UCAGU...UAG-5'@LB@ | |@LB@ 187 175@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -15.2136 kcal/mol@LB@Unfolding Energy - mRNA 0.973349 kcal/mol@LB@Unfolding Energy - sRNA 3.38772 kcal/mol@LB@@LB@Position - mRNA 57 -- 67@LB@Position - sRNA 176 -- 186@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 176 -- 182@LB@ |
26 |
0.002141 |
0.2633 |
b0183 |
rnhB |
-16.17 |
0.015603 |
251 -- 292 |
123 -- 175 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
______________251_______________________________________________________293\n______________|_________________________________________________________|\n___________5'-____________________________AG_G_______AAGAAUUAU__________AGUGU...UCC-3'\n______________AAUCUGCUGGCGGG___________CAG__A_UUAGUCA_________UGCAGG_AAG\n______________||||||||||||||___________||:__|_|:|||||_________||||||_|||\n______________UUAGACGACCGCCC___________GUU__U_AGUCAGU_________ACGUCC_UUC\n3'-UUU...CCAUA______________ACUAAAAUGUG___A__G_______GUGUACU________G___AGUUG...UAG-5'\n_____________|__________________________________________________________|\n_____________176________________________________________________________122\n |
22 -- 28 |
171 -- 177 |
-46.3072 kcal/mol |
12.4456 kcal/mol |
20.994 kcal/mol |
251 293@LB@ | |@LB@ 5'- AG G AAGAAUUAU AGUGU...UCC-3'@LB@ AAUCUGCUGGCGGG CAG A UUAGUCA UGCAGG AAG@LB@ |||||||||||||| ||: | |:||||| |||||| |||@LB@ UUAGACGACCGCCC GUU U AGUCAGU ACGUCC UUC@LB@3'-UUU...CCAUA ACUAAAAUGUG A G GUGUACU G AGUUG...UAG-5'@LB@ | |@LB@ 176 122@LB@@LB@@LB@Energy -16.17 kcal/mol@LB@Hybridization Energy -46.3072 kcal/mol@LB@Unfolding Energy - mRNA 12.4456 kcal/mol@LB@Unfolding Energy - sRNA 20.994 kcal/mol@LB@@LB@Position - mRNA 251 -- 292@LB@Position - sRNA 123 -- 175@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 171 -- 177@LB@ |
27 |
0.002233 |
0.2633 |
b3525 |
yhjH |
-10.03 |
0.271118 |
185 -- 216 |
151 -- 171 |
cyclic-di-GMP phosphodiesterase FlhDC-regulated |
|
_____________184_______________________________217\n_____________|_________________________________|\n5'-UUA...UUUAA__A___G_____CUU_____AUA__________UCCAG...CCU-3'\n______________AC_CAG__ACAU___UGAUG___AGGCAGGUUA\n______________||_|||__|||:___|||||___|||||:||:|\n______________UG_GUC__UGUG___ACUAC___UCCGUUCAGU\n3'-UUU...GGUUA__A___AG____U_______G____________UGAAA...UAG-5'\n_____________|_________________________________|\n_____________172_______________________________150\n |
209 -- 215 |
152 -- 158 |
-24.6278 kcal/mol |
4.97701 kcal/mol |
8.14531 kcal/mol |
184 217@LB@ | |@LB@5'-UUA...UUUAA A G CUU AUA UCCAG...CCU-3'@LB@ AC CAG ACAU UGAUG AGGCAGGUUA@LB@ || ||| |||: ||||| |||||:||:|@LB@ UG GUC UGUG ACUAC UCCGUUCAGU@LB@3'-UUU...GGUUA A AG U G UGAAA...UAG-5'@LB@ | |@LB@ 172 150@LB@@LB@@LB@Energy -10.03 kcal/mol@LB@Hybridization Energy -24.6278 kcal/mol@LB@Unfolding Energy - mRNA 4.97701 kcal/mol@LB@Unfolding Energy - sRNA 8.14531 kcal/mol@LB@@LB@Position - mRNA 185 -- 216@LB@Position - sRNA 151 -- 171@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 152 -- 158@LB@ |
28 |
0.002284 |
0.2633 |
b1114 |
mfd |
-18.81 |
0.004608 |
253 -- 297 |
50 -- 95 |
transcription-repair coupling factor |
|
_____________252______________298\n_____________|________________|\n5'-UUC...GCGUC___U____________CGGCG...AAA-3'\n______________UGC_GGGCGAGUUAAC\n______________|||_:|||:|||:|||\n______________ACG_UCCGUUCAGUUG\n3'-UUU...GUACU________________AAAGU...UAG-5'\n_____________|________________|\n_____________96_______________49\n |
262 -- 268 |
149 -- 155 |
-20.6961 kcal/mol |
4.60584 kcal/mol |
7.12854 kcal/mol |
252 298@LB@ | |@LB@5'-UUC...GCGUC U CGGCG...AAA-3'@LB@ UGC GGGCGAGUUAAC@LB@ ||| :|||:|||:|||@LB@ ACG UCCGUUCAGUUG@LB@3'-UUU...GUACU AAAGU...UAG-5'@LB@ | |@LB@ 96 49@LB@@LB@@LB@Energy -18.81 kcal/mol@LB@Hybridization Energy -20.6961 kcal/mol@LB@Unfolding Energy - mRNA 4.60584 kcal/mol@LB@Unfolding Energy - sRNA 7.12854 kcal/mol@LB@@LB@Position - mRNA 253 -- 297@LB@Position - sRNA 50 -- 95@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 149 -- 155@LB@ |
29 |
0.002294 |
0.2633 |
b0624 |
flc |
-16.49 |
0.013425 |
233 -- 293 |
118 -- 176 |
fluoride efflux channel dual topology membrane protein |
|
_____________232_____________________294\n_____________|_______________________|\n5'-AAA...CGGCG_______UA______C_______AAUCA...UUC-3'\n______________UUACACU_____UCA_UCAUACA\n______________||||||:_____|||_|||:|||\n______________AAUGUGG_____AGU_AGUGUGU\n3'-UUU...ACUAA_______UUAUG___C_______ACUAC...UAG-5'\n_____________|_______________________|\n_____________177_____________________117\n |
172 -- 178 |
167 -- 173 |
-16.8792 kcal/mol |
2.93634 kcal/mol |
5.08824 kcal/mol |
232 294@LB@ | |@LB@5'-AAA...CGGCG UA C AAUCA...UUC-3'@LB@ UUACACU UCA UCAUACA@LB@ ||||||: ||| |||:|||@LB@ AAUGUGG AGU AGUGUGU@LB@3'-UUU...ACUAA UUAUG C ACUAC...UAG-5'@LB@ | |@LB@ 177 117@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -16.8792 kcal/mol@LB@Unfolding Energy - mRNA 2.93634 kcal/mol@LB@Unfolding Energy - sRNA 5.08824 kcal/mol@LB@@LB@Position - mRNA 233 -- 293@LB@Position - sRNA 118 -- 176@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 167 -- 173@LB@ |
30 |
0.002398 |
0.2633 |
b0494 |
tesA |
-12.69 |
0.080698 |
14 -- 26 |
126 -- 138 |
acyl-CoA thioesterase 1 and protease I and lysophospholipase L1 |
|
_____________13____________27\n_____________|_____________|\n5'-UCC...AUGUA_____________CAGAC...UGG-3'\n______________GCGGUUGUCCCAC\n______________|||||::||||||\n______________CGCCAGUAGGGUG\n3'-UUU...CUUAA_____________ACGUA...UAG-5'\n_____________|_____________|\n_____________139___________125\n |
20 -- 26 |
126 -- 132 |
-24.3083 kcal/mol |
5.59054 kcal/mol |
8.249 kcal/mol |
13 27@LB@ | |@LB@5'-UCC...AUGUA CAGAC...UGG-3'@LB@ GCGGUUGUCCCAC@LB@ |||||::||||||@LB@ CGCCAGUAGGGUG@LB@3'-UUU...CUUAA ACGUA...UAG-5'@LB@ | |@LB@ 139 125@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -24.3083 kcal/mol@LB@Unfolding Energy - mRNA 5.59054 kcal/mol@LB@Unfolding Energy - sRNA 8.249 kcal/mol@LB@@LB@Position - mRNA 14 -- 26@LB@Position - sRNA 126 -- 138@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 126 -- 132@LB@ |