21 |
0.001192 |
0.1727 |
b2526 |
hscA |
-14.48 |
0.018641 |
235 -- 259 |
63 -- 88 |
DnaK-like molecular chaperone specific for IscU |
|
_____________234________________________260\n_____________|__________________________|\n5'-AGC...UUUGA__________________C_UC____GGCGG...UGG-3'\n______________GUGCUGCGCC_GCAUCAG_G__GUCU\n______________:|:|||||||_:||:|||_|__:|||\n______________UAUGACGCGG_UGUGGUC_C__UAGA\n3'-UUU...GCGCU__________U_______C_UU____ACCGA...GUG-5'\n_____________|__________________________|\n_____________89_________________________62\n |
245 -- 251 |
71 -- 77 |
-31.0682 kcal/mol |
9.20475 kcal/mol |
7.38674 kcal/mol |
234 260@LB@ | |@LB@5'-AGC...UUUGA C UC GGCGG...UGG-3'@LB@ GUGCUGCGCC GCAUCAG G GUCU@LB@ :|:||||||| :||:||| | :|||@LB@ UAUGACGCGG UGUGGUC C UAGA@LB@3'-UUU...GCGCU U C UU ACCGA...GUG-5'@LB@ | |@LB@ 89 62@LB@@LB@@LB@Energy -14.48 kcal/mol@LB@Hybridization Energy -31.0682 kcal/mol@LB@Unfolding Energy - mRNA 9.20475 kcal/mol@LB@Unfolding Energy - sRNA 7.38674 kcal/mol@LB@@LB@Position - mRNA 235 -- 259@LB@Position - sRNA 63 -- 88@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 71 -- 77@LB@ |
22 |
0.001393 |
0.1727 |
b0794 |
ybhF |
-14.07 |
0.022426 |
148 -- 164 |
67 -- 84 |
putative ABC transporter ATPase |
|
_____________147________________165\n_____________|__________________|\n5'-UAC...GAUGA__________________UGCCA...GUU-3'\n______________UGCGUU_ACGCCAGGGAA\n______________||||::_||:||||||||\n______________ACGCGG_UGUGGUCCCUU\n3'-UUU...UUAUG______U___________UAGAA...GUG-5'\n_____________|__________________|\n_____________85_________________66\n |
158 -- 164 |
67 -- 73 |
-27.705 kcal/mol |
6.27905 kcal/mol |
7.35473 kcal/mol |
147 165@LB@ | |@LB@5'-UAC...GAUGA UGCCA...GUU-3'@LB@ UGCGUU ACGCCAGGGAA@LB@ ||||:: ||:||||||||@LB@ ACGCGG UGUGGUCCCUU@LB@3'-UUU...UUAUG U UAGAA...GUG-5'@LB@ | |@LB@ 85 66@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -27.705 kcal/mol@LB@Unfolding Energy - mRNA 6.27905 kcal/mol@LB@Unfolding Energy - sRNA 7.35473 kcal/mol@LB@@LB@Position - mRNA 148 -- 164@LB@Position - sRNA 67 -- 84@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 67 -- 73@LB@ |
23 |
0.001421 |
0.1727 |
b1234 |
rssA |
-12.55 |
0.044848 |
179 -- 192 |
61 -- 74 |
putative patatin-like family phospholipase |
|
_____________178____________193\n_____________|______________|\n5'-GAU...GCAUU______________CGGGA...AAA-3'\n______________CCAGGGGAAUCUUG\n______________||||||:|||||||\n______________GGUCCCUUUAGAAC\n3'-UUU...GUUGU______________CGACG...GUG-5'\n_____________|______________|\n_____________75_____________60\n |
186 -- 192 |
61 -- 67 |
-22.3239 kcal/mol |
6.14875 kcal/mol |
3.62869 kcal/mol |
178 193@LB@ | |@LB@5'-GAU...GCAUU CGGGA...AAA-3'@LB@ CCAGGGGAAUCUUG@LB@ ||||||:|||||||@LB@ GGUCCCUUUAGAAC@LB@3'-UUU...GUUGU CGACG...GUG-5'@LB@ | |@LB@ 75 60@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -22.3239 kcal/mol@LB@Unfolding Energy - mRNA 6.14875 kcal/mol@LB@Unfolding Energy - sRNA 3.62869 kcal/mol@LB@@LB@Position - mRNA 179 -- 192@LB@Position - sRNA 61 -- 74@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 61 -- 67@LB@ |
24 |
0.001457 |
0.1727 |
b0424 |
yajL |
-16.26 |
0.008266 |
79 -- 97 |
64 -- 86 |
oxidative-stress-resistance chaperone |
|
_____________78______________________98\n_____________|_______________________|\n5'-AGA...CGCGC_______________________GACUA...CCA-3'\n______________GCUGCGCCA_CACU___GAAAUC\n______________:||||||||_|||:___||||||\n______________UGACGCGGU_GUGG___CUUUAG\n3'-UUU...GCUUA_________U____UCC______AACCG...GUG-5'\n_____________|_______________________|\n_____________87______________________63\n |
81 -- 87 |
78 -- 84 |
-26.9283 kcal/mol |
3.28429 kcal/mol |
7.38435 kcal/mol |
78 98@LB@ | |@LB@5'-AGA...CGCGC GACUA...CCA-3'@LB@ GCUGCGCCA CACU GAAAUC@LB@ :|||||||| |||: ||||||@LB@ UGACGCGGU GUGG CUUUAG@LB@3'-UUU...GCUUA U UCC AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -26.9283 kcal/mol@LB@Unfolding Energy - mRNA 3.28429 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 79 -- 97@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 78 -- 84@LB@ |
25 |
0.001541 |
0.1727 |
b1948 |
fliP |
-12.25 |
0.051366 |
190 -- 216 |
44 -- 71 |
flagellar biosynthesis protein |
|
_____________189__________________________217\n_____________|____________________________|\n5'-AUU...GUAGC________C__A_________UU_____CUGUC...GCG-3'\n______________GGGAGAUC_UG__UGCGUCGU__AUUGU\n______________||||:|||_||__||||:|||__|||:|\n______________CCCUUUAG_AC__ACGCGGCA__UAAUA\n3'-UUU...GUGGU________A__CG________UU_____AUACU...GUG-5'\n_____________|____________________________|\n_____________72___________________________43\n |
203 -- 209 |
51 -- 57 |
-29.2591 kcal/mol |
10.1171 kcal/mol |
6.89657 kcal/mol |
189 217@LB@ | |@LB@5'-AUU...GUAGC C A UU CUGUC...GCG-3'@LB@ GGGAGAUC UG UGCGUCGU AUUGU@LB@ ||||:||| || ||||:||| |||:|@LB@ CCCUUUAG AC ACGCGGCA UAAUA@LB@3'-UUU...GUGGU A CG UU AUACU...GUG-5'@LB@ | |@LB@ 72 43@LB@@LB@@LB@Energy -12.25 kcal/mol@LB@Hybridization Energy -29.2591 kcal/mol@LB@Unfolding Energy - mRNA 10.1171 kcal/mol@LB@Unfolding Energy - sRNA 6.89657 kcal/mol@LB@@LB@Position - mRNA 190 -- 216@LB@Position - sRNA 44 -- 71@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 51 -- 57@LB@ |
26 |
0.001553 |
0.1727 |
b0853 |
ybjN |
-8.94 |
0.217650 |
161 -- 169 |
52 -- 60 |
negative regulator of motility; multicopy suppressor of coaA(Ts) |
|
_____________160_______170\n_____________|_________|\n5'-CGC...CGUAA_________GUCUU...AUC-3'\n______________GCUGUGCCG\n______________||||:||||\n______________CGACGCGGC\n3'-UUU...AGAAC_________AUUUA...GUG-5'\n_____________|_________|\n_____________61________51\n |
163 -- 169 |
52 -- 58 |
-18.9448 kcal/mol |
5.13325 kcal/mol |
4.86882 kcal/mol |
160 170@LB@ | |@LB@5'-CGC...CGUAA GUCUU...AUC-3'@LB@ GCUGUGCCG@LB@ ||||:||||@LB@ CGACGCGGC@LB@3'-UUU...AGAAC AUUUA...GUG-5'@LB@ | |@LB@ 61 51@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -18.9448 kcal/mol@LB@Unfolding Energy - mRNA 5.13325 kcal/mol@LB@Unfolding Energy - sRNA 4.86882 kcal/mol@LB@@LB@Position - mRNA 161 -- 169@LB@Position - sRNA 52 -- 60@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 52 -- 58@LB@ |
27 |
0.001577 |
0.1727 |
b1679 |
sufE |
-9.94 |
0.142549 |
247 -- 262 |
68 -- 86 |
sulfur acceptor protein |
|
_____________246_________________263\n_____________|___________________|\n5'-AUG...UUUAC___________U_______AGAGA...GUC-3'\n______________GCUGCGCCAAC____GGGA\n______________:||||||||||____||||\n______________UGACGCGGUUG____CCCU\n3'-UUU...GCUUA___________UGGU____UUAGA...GUG-5'\n_____________|___________________|\n_____________87__________________67\n |
251 -- 257 |
76 -- 82 |
-25.4399 kcal/mol |
8.12138 kcal/mol |
7.37523 kcal/mol |
246 263@LB@ | |@LB@5'-AUG...UUUAC U AGAGA...GUC-3'@LB@ GCUGCGCCAAC GGGA@LB@ :|||||||||| ||||@LB@ UGACGCGGUUG CCCU@LB@3'-UUU...GCUUA UGGU UUAGA...GUG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -25.4399 kcal/mol@LB@Unfolding Energy - mRNA 8.12138 kcal/mol@LB@Unfolding Energy - sRNA 7.37523 kcal/mol@LB@@LB@Position - mRNA 247 -- 262@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 76 -- 82@LB@ |
28 |
0.001577 |
0.1727 |
b0598 |
cstA |
-11.00 |
0.089647 |
31 -- 48 |
28 -- 45 |
carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
|
_____________30__________________49\n_____________|___________________|\n5'-GUA...ACAGA___________A_______AAAAC...ACG-3'\n______________AUUA_GAUGAG_UUGCAGG\n______________||||_||||||_||:||:|\n______________UAAU_CUACUC_AAUGUUC\n3'-UUU...UUUAA____A______________CCGUG...GUG-5'\n_____________|___________________|\n_____________46__________________27\n |
42 -- 48 |
28 -- 34 |
-16.2081 kcal/mol |
3.25033 kcal/mol |
1.95571 kcal/mol |
30 49@LB@ | |@LB@5'-GUA...ACAGA A AAAAC...ACG-3'@LB@ AUUA GAUGAG UUGCAGG@LB@ |||| |||||| ||:||:|@LB@ UAAU CUACUC AAUGUUC@LB@3'-UUU...UUUAA A CCGUG...GUG-5'@LB@ | |@LB@ 46 27@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -16.2081 kcal/mol@LB@Unfolding Energy - mRNA 3.25033 kcal/mol@LB@Unfolding Energy - sRNA 1.95571 kcal/mol@LB@@LB@Position - mRNA 31 -- 48@LB@Position - sRNA 28 -- 45@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 28 -- 34@LB@ |
29 |
0.001588 |
0.1727 |
b4371 |
rsmC |
-11.43 |
0.073969 |
145 -- 160 |
74 -- 89 |
16S rRNA m(2)G1207 methyltransferase SAM-dependent |
|
_____________144______________161\n_____________|________________|\n5'-AUC...UCGUC_____C__________AUGGC...UGC-3'\n______________GAUAC_GCGCCAACAU\n______________:||||_|||||||||:\n______________UUAUG_CGCGGUUGUG\n3'-UUU...CGCGC_____A__________GUCCC...GUG-5'\n_____________|________________|\n_____________90_______________73\n |
154 -- 160 |
74 -- 80 |
-22.1753 kcal/mol |
3.46317 kcal/mol |
7.27848 kcal/mol |
144 161@LB@ | |@LB@5'-AUC...UCGUC C AUGGC...UGC-3'@LB@ GAUAC GCGCCAACAU@LB@ :|||| |||||||||:@LB@ UUAUG CGCGGUUGUG@LB@3'-UUU...CGCGC A GUCCC...GUG-5'@LB@ | |@LB@ 90 73@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -22.1753 kcal/mol@LB@Unfolding Energy - mRNA 3.46317 kcal/mol@LB@Unfolding Energy - sRNA 7.27848 kcal/mol@LB@@LB@Position - mRNA 145 -- 160@LB@Position - sRNA 74 -- 89@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 74 -- 80@LB@ |
30 |
0.001614 |
0.1727 |
b3607 |
cysE |
-13.31 |
0.031682 |
13 -- 32 |
63 -- 81 |
serine acetyltransferase |
|
_____________12___________________33\n_____________|____________________|\n5'-CGG...GAAAU______A____A________AUCAA...CGA-3'\n______________GCCAAU_ACCG_GGAAAUUU\n______________|||||:_|||:_||||||:|\n______________CGGUUG_UGGU_CCUUUAGA\n3'-UUU...UGACG___________C________ACCGA...GUG-5'\n_____________|____________________|\n_____________82___________________62\n |
26 -- 32 |
63 -- 69 |
-21.8966 kcal/mol |
1.53041 kcal/mol |
7.0543 kcal/mol |
12 33@LB@ | |@LB@5'-CGG...GAAAU A A AUCAA...CGA-3'@LB@ GCCAAU ACCG GGAAAUUU@LB@ |||||: |||: ||||||:|@LB@ CGGUUG UGGU CCUUUAGA@LB@3'-UUU...UGACG C ACCGA...GUG-5'@LB@ | |@LB@ 82 62@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -21.8966 kcal/mol@LB@Unfolding Energy - mRNA 1.53041 kcal/mol@LB@Unfolding Energy - sRNA 7.0543 kcal/mol@LB@@LB@Position - mRNA 13 -- 32@LB@Position - sRNA 63 -- 81@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 63 -- 69@LB@ |