| 84 |
0.01516 |
0.5385 |
b1871 |
cmoB |
-9.91 |
0.109770 |
166 -- 183 |
71 -- 87 |
tRNA (cmo5U34)-carboxymethyltransferase carboxy-SAM-dependent |
|
_____________165________________184\n_____________|__________________|\n5'-CAC...ACUUU_______U_G____A___AAAGC...AGC-3'\n______________GGUUCAC_G_UGGC_UUA\n______________:||||||_|_||||_|||\n______________UCAAGUG_C_ACCG_AAU\n3'-CGC...CGUUU_________A____A___CAAUA...AAG-5'\n_____________|__________________|\n_____________88_________________70\n |
166 -- 172 |
81 -- 87 |
-14.4863 kcal/mol |
4.01825 kcal/mol |
0.562376 kcal/mol |
165 184@LB@ | |@LB@5'-CAC...ACUUU U G A AAAGC...AGC-3'@LB@ GGUUCAC G UGGC UUA@LB@ :|||||| | |||| |||@LB@ UCAAGUG C ACCG AAU@LB@3'-CGC...CGUUU A A CAAUA...AAG-5'@LB@ | |@LB@ 88 70@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -14.4863 kcal/mol@LB@Unfolding Energy - mRNA 4.01825 kcal/mol@LB@Unfolding Energy - sRNA 0.562376 kcal/mol@LB@@LB@Position - mRNA 166 -- 183@LB@Position - sRNA 71 -- 87@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 90 |
0.01553 |
0.5385 |
b1043 |
csgC |
-15.92 |
0.009464 |
100 -- 115 |
69 -- 84 |
curli assembly protein |
|
_____________99_______________116\n_____________|________________|\n5'-GUG...GUGAC___G____________AACAA...UUA-3'\n______________UCA_GUUGGCUUUGGU\n______________|||_|||||||||:||\n______________AGU_CAACCGAAAUCA\n3'-CGC...UUUCA___G____________AUAAG...AAG-5'\n_____________|________________|\n_____________85_______________68\n |
109 -- 115 |
69 -- 75 |
-23.6243 kcal/mol |
7.14442 kcal/mol |
0.563592 kcal/mol |
99 116@LB@ | |@LB@5'-GUG...GUGAC G AACAA...UUA-3'@LB@ UCA GUUGGCUUUGGU@LB@ ||| |||||||||:||@LB@ AGU CAACCGAAAUCA@LB@3'-CGC...UUUCA G AUAAG...AAG-5'@LB@ | |@LB@ 85 68@LB@@LB@@LB@Energy -15.92 kcal/mol@LB@Hybridization Energy -23.6243 kcal/mol@LB@Unfolding Energy - mRNA 7.14442 kcal/mol@LB@Unfolding Energy - sRNA 0.563592 kcal/mol@LB@@LB@Position - mRNA 100 -- 115@LB@Position - sRNA 69 -- 84@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 12 |
0.002293 |
0.5385 |
b1823 |
cspC |
-13.69 |
0.023618 |
13 -- 32 |
14 -- 35 |
stress protein member of the CspA-family |
|
_____________12_____________________33\n_____________|______________________|\n5'-UAU...UAACA________________C_____ACAGU...UCU-3'\n______________GAUUUC__GGGUUAAA_GAGGU\n______________||:|||__||||||||_|||||\n______________CUGAAG__CCCAAUUU_CUCCA\n3'-CGC...CGUCA______UU________U_____CGGCG...AAG-5'\n_____________|______________________|\n_____________36_____________________13\n |
20 -- 26 |
20 -- 26 |
-23.8593 kcal/mol |
6.83349 kcal/mol |
3.33183 kcal/mol |
12 33@LB@ | |@LB@5'-UAU...UAACA C ACAGU...UCU-3'@LB@ GAUUUC GGGUUAAA GAGGU@LB@ ||:||| |||||||| |||||@LB@ CUGAAG CCCAAUUU CUCCA@LB@3'-CGC...CGUCA UU U CGGCG...AAG-5'@LB@ | |@LB@ 36 13@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -23.8593 kcal/mol@LB@Unfolding Energy - mRNA 6.83349 kcal/mol@LB@Unfolding Energy - sRNA 3.33183 kcal/mol@LB@@LB@Position - mRNA 13 -- 32@LB@Position - sRNA 14 -- 35@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 46 |
0.009803 |
0.5385 |
b1418 |
cybB |
-9.32 |
0.138160 |
281 -- 295 |
73 -- 89 |
cytochrome b561 |
|
_____________280_______________296\n_____________|_________________|\n5'-AAC...GCAAU_________________CUUCC-3'\n______________GGAGUUU_CG_UGGUUU\n______________::||||:_||_|||:||\n______________UUUCAAG_GC_ACCGAA\n3'-CGC...GGCGU_______U__A______AUCAA...AAG-5'\n_____________|_________________|\n_____________90________________72\n |
281 -- 287 |
83 -- 89 |
-12.2046 kcal/mol |
2.36714 kcal/mol |
0.517627 kcal/mol |
280 296@LB@ | |@LB@5'-AAC...GCAAU CUUCC-3'@LB@ GGAGUUU CG UGGUUU@LB@ ::||||: || |||:||@LB@ UUUCAAG GC ACCGAA@LB@3'-CGC...GGCGU U A AUCAA...AAG-5'@LB@ | |@LB@ 90 72@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -12.2046 kcal/mol@LB@Unfolding Energy - mRNA 2.36714 kcal/mol@LB@Unfolding Energy - sRNA 0.517627 kcal/mol@LB@@LB@Position - mRNA 281 -- 295@LB@Position - sRNA 73 -- 89@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 37 |
0.006912 |
0.5385 |
b3693 |
dgoK |
-11.15 |
0.066742 |
227 -- 259 |
71 -- 102 |
2-oxo-3-deoxygalactonate kinase |
|
_____________226________________________________260\n_____________|__________________________________|\n5'-CAG...AUUGA_________GAC___UCUG_____CC________UCAGG...CAG-3'\n______________CUGGGGAUC___CAA_____CGCG__UGGCUUUA\n______________||||:||||___|||_____|:||__||||||||\n______________GACCUCUAG___GUU_____GUGC__ACCGAAAU\n____3'-CGCCUAG_________GC____UUCAA____A_________CAAUA...AAG-5'\n_____________|__________________________________|\n_____________103________________________________70\n |
253 -- 259 |
71 -- 77 |
-30.6737 kcal/mol |
7.60256 kcal/mol |
11.9219 kcal/mol |
226 260@LB@ | |@LB@5'-CAG...AUUGA GAC UCUG CC UCAGG...CAG-3'@LB@ CUGGGGAUC CAA CGCG UGGCUUUA@LB@ ||||:|||| ||| |:|| ||||||||@LB@ GACCUCUAG GUU GUGC ACCGAAAU@LB@ 3'-CGCCUAG GC UUCAA A CAAUA...AAG-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -30.6737 kcal/mol@LB@Unfolding Energy - mRNA 7.60256 kcal/mol@LB@Unfolding Energy - sRNA 11.9219 kcal/mol@LB@@LB@Position - mRNA 227 -- 259@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 60 |
0.01169 |
0.5385 |
b2441 |
eutB |
-14.17 |
0.019414 |
238 -- 261 |
12 -- 34 |
ethanolamine ammonia-lyase large subunit heavy chain |
|
_____________237______________________262\n_____________|________________________|\n5'-CUG...AUAUC_G_______AUG____________UGGCU...UGG-3'\n______________A_UUUAAGG___UAAAAGAGGUGC\n______________|_||:||||___||||||||||||\n______________U_AAGUUCC___AUUUUCUCCACG\n3'-CGC...GUCAC_G_______CA_____________GCGAG...AAG-5'\n_____________|________________________|\n_____________35_______________________11\n |
255 -- 261 |
12 -- 18 |
-24.3693 kcal/mol |
4.39141 kcal/mol |
5.80707 kcal/mol |
237 262@LB@ | |@LB@5'-CUG...AUAUC G AUG UGGCU...UGG-3'@LB@ A UUUAAGG UAAAAGAGGUGC@LB@ | ||:|||| ||||||||||||@LB@ U AAGUUCC AUUUUCUCCACG@LB@3'-CGC...GUCAC G CA GCGAG...AAG-5'@LB@ | |@LB@ 35 11@LB@@LB@@LB@Energy -14.17 kcal/mol@LB@Hybridization Energy -24.3693 kcal/mol@LB@Unfolding Energy - mRNA 4.39141 kcal/mol@LB@Unfolding Energy - sRNA 5.80707 kcal/mol@LB@@LB@Position - mRNA 238 -- 261@LB@Position - sRNA 12 -- 34@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 141 |
0.02331 |
0.5385 |
b1844 |
exoX |
-7.22 |
0.302733 |
200 -- 217 |
62 -- 83 |
exodeoxyribonuclease 10; DNA exonuclease X |
|
_____________199_____________________218\n_____________|_______________________|\n5'-UUA...CAUGC_______C__A____________UACAG...UGA-3'\n______________CAUGUUG_GC_UUA_____UCGA\n______________||:||||_||_|||_____||||\n______________GUGCAAC_CG_AAU_____AGCU\n3'-CGC...UUCAA__________A___CAAUA____CAACU...AAG-5'\n_____________|_______________________|\n_____________84______________________61\n |
200 -- 206 |
77 -- 83 |
-13.618 kcal/mol |
4.77882 kcal/mol |
1.62352 kcal/mol |
199 218@LB@ | |@LB@5'-UUA...CAUGC C A UACAG...UGA-3'@LB@ CAUGUUG GC UUA UCGA@LB@ ||:|||| || ||| ||||@LB@ GUGCAAC CG AAU AGCU@LB@3'-CGC...UUCAA A CAAUA CAACU...AAG-5'@LB@ | |@LB@ 84 61@LB@@LB@@LB@Energy -7.22 kcal/mol@LB@Hybridization Energy -13.618 kcal/mol@LB@Unfolding Energy - mRNA 4.77882 kcal/mol@LB@Unfolding Energy - sRNA 1.62352 kcal/mol@LB@@LB@Position - mRNA 200 -- 217@LB@Position - sRNA 62 -- 83@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 20 |
0.003438 |
0.5385 |
b3093 |
exuT |
-11.51 |
0.057623 |
213 -- 228 |
75 -- 90 |
hexuronate transporter |
|
_____________212______________229\n_____________|________________|\n5'-GGA...AAAUU_____G__________AUAUG...CGC-3'\n______________AAAGG_UUACGUUGGU\n______________|||:|_|:|||||||:\n______________UUUUC_AGUGCAACCG\n3'-CGC...AGGCG_____A__________AAAUC...AAG-5'\n_____________|________________|\n_____________91_______________74\n |
222 -- 228 |
75 -- 81 |
-17.0017 kcal/mol |
4.97243 kcal/mol |
0.517251 kcal/mol |
212 229@LB@ | |@LB@5'-GGA...AAAUU G AUAUG...CGC-3'@LB@ AAAGG UUACGUUGGU@LB@ |||:| |:|||||||:@LB@ UUUUC AGUGCAACCG@LB@3'-CGC...AGGCG A AAAUC...AAG-5'@LB@ | |@LB@ 91 74@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -17.0017 kcal/mol@LB@Unfolding Energy - mRNA 4.97243 kcal/mol@LB@Unfolding Energy - sRNA 0.517251 kcal/mol@LB@@LB@Position - mRNA 213 -- 228@LB@Position - sRNA 75 -- 90@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 47 |
0.009854 |
0.5385 |
b3408 |
feoA |
-10.27 |
0.095129 |
159 -- 188 |
52 -- 83 |
ferrous iron transporter protein A |
|
_____________158_________________________________189\n_____________|___________________________________|\n5'-AGC...CGCCC____A_______________C___UAA________AAGUA...CUG-3'\n______________CAUG__GGU___AGUUA_UC_AGU___UGAGAAAC\n______________||:|__||:___|||||_||_|||___||||||||\n______________GUGC__CCG___UCAAU_AG_UCA___ACUCUUUG\n3'-CGC...UUCAA____AA___AAA_____A__C______________AGAGC...AAG-5'\n_____________|___________________________________|\n_____________84__________________________________51\n |
182 -- 188 |
52 -- 58 |
-20.9255 kcal/mol |
6.25891 kcal/mol |
4.4004 kcal/mol |
158 189@LB@ | |@LB@5'-AGC...CGCCC A C UAA AAGUA...CUG-3'@LB@ CAUG GGU AGUUA UC AGU UGAGAAAC@LB@ ||:| ||: ||||| || ||| ||||||||@LB@ GUGC CCG UCAAU AG UCA ACUCUUUG@LB@3'-CGC...UUCAA AA AAA A C AGAGC...AAG-5'@LB@ | |@LB@ 84 51@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -20.9255 kcal/mol@LB@Unfolding Energy - mRNA 6.25891 kcal/mol@LB@Unfolding Energy - sRNA 4.4004 kcal/mol@LB@@LB@Position - mRNA 159 -- 188@LB@Position - sRNA 52 -- 83@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 65 |
0.01282 |
0.5385 |
b0589 |
fepG |
-12.08 |
0.045738 |
8 -- 17 |
74 -- 83 |
iron-enterobactin ABC transporter permease |
|
_____________7__________18\n_____________|__________|\n____5'-CAUAUGG__________GGUGG...CGC-3'\n______________CGCGUUGGCU\n______________|:||||||||\n______________GUGCAACCGA\n3'-CGC...UUCAA__________AAUCA...AAG-5'\n_____________|__________|\n_____________84_________73\n |
11 -- 17 |
74 -- 80 |
-17.1529 kcal/mol |
4.57841 kcal/mol |
0.494551 kcal/mol |
7 18@LB@ | |@LB@ 5'-CAUAUGG GGUGG...CGC-3'@LB@ CGCGUUGGCU@LB@ |:||||||||@LB@ GUGCAACCGA@LB@3'-CGC...UUCAA AAUCA...AAG-5'@LB@ | |@LB@ 84 73@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -17.1529 kcal/mol@LB@Unfolding Energy - mRNA 4.57841 kcal/mol@LB@Unfolding Energy - sRNA 0.494551 kcal/mol@LB@@LB@Position - mRNA 8 -- 17@LB@Position - sRNA 74 -- 83@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 74 -- 80@LB@ |
