| 167 |
0.01994 |
0.3993 |
b1982 |
amn |
-7.06 |
0.411594 |
174 -- 215 |
8 -- 54 |
AMP nucleosidase |
|
_____________173______________________________________________216\n_____________|________________________________________________|\n5'-UUU...UGUGC_____U____________________CACACA___A____________UCCGG...GCA-3'\n______________GGUAA_UGU_AUGG___AACAGGAGA_______UG__AUAAUAAGGGC\n______________||:||_||:_||||___|||||:|:|_______||__|:|||||:|||\n______________CCGUU_ACG_UACC___UUGUCUUUU_______AC__UGUUAUUUCCG\n3'-UUU...AGUCA_________U____GGG_________AUUUUAG__AC___________UAUAUUG-5'\n_____________|________________________________________________|\n_____________55_______________________________________________7\n |
209 -- 215 |
8 -- 14 |
-29.9928 kcal/mol |
10.9089 kcal/mol |
12.019 kcal/mol |
173 216@LB@ | |@LB@5'-UUU...UGUGC U CACACA A UCCGG...GCA-3'@LB@ GGUAA UGU AUGG AACAGGAGA UG AUAAUAAGGGC@LB@ ||:|| ||: |||| |||||:|:| || |:|||||:|||@LB@ CCGUU ACG UACC UUGUCUUUU AC UGUUAUUUCCG@LB@3'-UUU...AGUCA U GGG AUUUUAG AC UAUAUUG-5'@LB@ | |@LB@ 55 7@LB@@LB@@LB@Energy -7.06 kcal/mol@LB@Hybridization Energy -29.9928 kcal/mol@LB@Unfolding Energy - mRNA 10.9089 kcal/mol@LB@Unfolding Energy - sRNA 12.019 kcal/mol@LB@@LB@Position - mRNA 174 -- 215@LB@Position - sRNA 8 -- 54@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 92 |
0.007983 |
0.2918 |
b2513 |
yfgM |
-8.87 |
0.203113 |
70 -- 109 |
9 -- 65 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________69___________________________________________________________110\n_____________|____________________________________________________________|\n5'-GGC...UGCUG__U_____UGA_____________C___A_______________________________AUUUG...UUG-3'\n______________GG_GAGUC___AGUGGC____UAA_GGC_CAGCAG________________UAGUGAAGG\n______________||_:|:||___||||||____:||_|||_||:|||________________:|:|:||||\n______________CC_UUUAG___UCACCG____GUU_CCG_GUUGUC________________GUUAUUUCC\n3'-UUU...UACAA__U______________UUAC___A___G______UUUUAUUUUAGACACU_________GUAUAUUG-5'\n_____________|____________________________________________________________|\n_____________66___________________________________________________________8\n |
103 -- 109 |
9 -- 15 |
-31.9345 kcal/mol |
11.9273 kcal/mol |
11.1365 kcal/mol |
69 110@LB@ | |@LB@5'-GGC...UGCUG U UGA C A AUUUG...UUG-3'@LB@ GG GAGUC AGUGGC UAA GGC CAGCAG UAGUGAAGG@LB@ || :|:|| |||||| :|| ||| ||:||| :|:|:||||@LB@ CC UUUAG UCACCG GUU CCG GUUGUC GUUAUUUCC@LB@3'-UUU...UACAA U UUAC A G UUUUAUUUUAGACACU GUAUAUUG-5'@LB@ | |@LB@ 66 8@LB@@LB@@LB@Energy -8.87 kcal/mol@LB@Hybridization Energy -31.9345 kcal/mol@LB@Unfolding Energy - mRNA 11.9273 kcal/mol@LB@Unfolding Energy - sRNA 11.1365 kcal/mol@LB@@LB@Position - mRNA 70 -- 109@LB@Position - sRNA 9 -- 65@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 21 |
0.0009862 |
0.1579 |
b2572 |
rseA |
-10.60 |
0.091224 |
9 -- 29 |
44 -- 65 |
anti-sigma factor |
|
_____________8______________________30\n_____________|______________________|\n___5'-UCCCUCCC________UAC____UG_____AACCU...GGG-3'\n______________GGAAGAUU____GCA__GCAAU\n______________||||:||:____|||__|||||\n______________CCUUUUAG____CGU__CGUUA\n3'-UUU...UACAA________UCAC___UA_____CCGGG...UUG-5'\n_____________|______________________|\n_____________66_____________________43\n |
10 -- 16 |
58 -- 64 |
-18.0609 kcal/mol |
3.14057 kcal/mol |
4.32401 kcal/mol |
8 30@LB@ | |@LB@ 5'-UCCCUCCC UAC UG AACCU...GGG-3'@LB@ GGAAGAUU GCA GCAAU@LB@ ||||:||: ||| |||||@LB@ CCUUUUAG CGU CGUUA@LB@3'-UUU...UACAA UCAC UA CCGGG...UUG-5'@LB@ | |@LB@ 66 43@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -18.0609 kcal/mol@LB@Unfolding Energy - mRNA 3.14057 kcal/mol@LB@Unfolding Energy - sRNA 4.32401 kcal/mol@LB@@LB@Position - mRNA 9 -- 29@LB@Position - sRNA 44 -- 65@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 60 |
0.004583 |
0.2539 |
b0674 |
asnB |
-9.07 |
0.186262 |
281 -- 298 |
39 -- 51 |
asparagine synthetase B |
|
_____________280________________299\n_____________|__________________|\n5'-ACA...CGCCU______UCAUC_______GG-3'\n______________GAUGCG_____GUGGCCC\n______________:||||:_____:||||||\n______________UUACGU_____UACCGGG\n3'-UUU...CACCG__________________UUGUC...UUG-5'\n_____________|__________________|\n_____________52_________________38\n |
292 -- 298 |
39 -- 45 |
-18.7239 kcal/mol |
4.90882 kcal/mol |
4.74571 kcal/mol |
280 299@LB@ | |@LB@5'-ACA...CGCCU UCAUC GG-3'@LB@ GAUGCG GUGGCCC@LB@ :||||: :||||||@LB@ UUACGU UACCGGG@LB@3'-UUU...CACCG UUGUC...UUG-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -9.07 kcal/mol@LB@Hybridization Energy -18.7239 kcal/mol@LB@Unfolding Energy - mRNA 4.90882 kcal/mol@LB@Unfolding Energy - sRNA 4.74571 kcal/mol@LB@@LB@Position - mRNA 281 -- 298@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 160 |
0.01821 |
0.3828 |
b0106 |
hofC |
-9.30 |
0.168390 |
246 -- 262 |
42 -- 54 |
assembly protein in type IV pilin biogenesis transmembrane protein |
|
_____________245_______________263\n_____________|_________________|\n5'-UUA...GCGAC________GCAA_____GAUGC...UGG-3'\n______________GGCAAUGC____GAUGG\n______________||||||||____:||||\n______________CCGUUACG____UUACC\n3'-UUU...AGUCA_________________GGGUU...UUG-5'\n_____________|_________________|\n_____________55________________41\n |
247 -- 253 |
47 -- 53 |
-17.2549 kcal/mol |
4.45921 kcal/mol |
3.49932 kcal/mol |
245 263@LB@ | |@LB@5'-UUA...GCGAC GCAA GAUGC...UGG-3'@LB@ GGCAAUGC GAUGG@LB@ |||||||| :||||@LB@ CCGUUACG UUACC@LB@3'-UUU...AGUCA GGGUU...UUG-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -9.30 kcal/mol@LB@Hybridization Energy -17.2549 kcal/mol@LB@Unfolding Energy - mRNA 4.45921 kcal/mol@LB@Unfolding Energy - sRNA 3.49932 kcal/mol@LB@@LB@Position - mRNA 246 -- 262@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 59 |
0.004284 |
0.2442 |
b0094 |
ftsA |
-10.23 |
0.109208 |
176 -- 218 |
1 -- 63 |
ATP-binding cell division FtsK recruitment protein |
|
_____________175________________________________________________________________219\n_____________|__________________________________________________________________|\n5'-AAU...GCAAC__________________CA___AG___________________________UCA_____ACG___AGAAA...UCA-3'\n______________AAAAUCAG_______GCA__GGC__AACA________________ACAAUGA___AGGCG___GAC\n______________||||||||_______|||__|||__||||________________|||||:|___||||:___:||\n______________UUUUAGUC_______CGU__CCG__UUGU________________UGUUAUU___UCCGU___UUG\n3'-UUU...CAACC________ACCGUUA___UA___GG____CUUUUAUUUUAGACAC_______________AUA___-5'\n_____________|_________________________________________________________________|\n_____________64________________________________________________________________1\n |
198 -- 204 |
12 -- 18 |
-27.1283 kcal/mol |
4.74085 kcal/mol |
12.1605 kcal/mol |
175 219@LB@ | |@LB@5'-AAU...GCAAC CA AG UCA ACG AGAAA...UCA-3'@LB@ AAAAUCAG GCA GGC AACA ACAAUGA AGGCG GAC@LB@ |||||||| ||| ||| |||| |||||:| ||||: :||@LB@ UUUUAGUC CGU CCG UUGU UGUUAUU UCCGU UUG@LB@3'-UUU...CAACC ACCGUUA UA GG CUUUUAUUUUAGACAC AUA -5'@LB@ | |@LB@ 64 1@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -27.1283 kcal/mol@LB@Unfolding Energy - mRNA 4.74085 kcal/mol@LB@Unfolding Energy - sRNA 12.1605 kcal/mol@LB@@LB@Position - mRNA 176 -- 218@LB@Position - sRNA 1 -- 63@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 17 |
0.0007572 |
0.1438 |
b2512 |
bamB |
-10.25 |
0.108120 |
60 -- 97 |
8 -- 56 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________59________________________________________________98\n_____________|_________________________________________________|\n5'-GCU...CCUGC_______A___U_____G____AAG_________________GC_____GCGCG...CCC-3'\n______________GUGGUGA_GCA_U_GCU_AGCA_____________GUGAUAA__AAGGU\n______________||||::|_|||_|_||:_|:||_____________||||:||__||||:\n______________CACCGUU_CGU_A_CGG_UUGU_____________CACUGUU__UUCCG\n3'-UUU...UUAGU_______A___U_C___G____CUUUUAUUUUAGA_______AU_____UAUAUUG-5'\n_____________|_________________________________________________|\n_____________57________________________________________________7\n |
84 -- 90 |
15 -- 21 |
-31.6141 kcal/mol |
9.34469 kcal/mol |
12.0216 kcal/mol |
59 98@LB@ | |@LB@5'-GCU...CCUGC A U G AAG GC GCGCG...CCC-3'@LB@ GUGGUGA GCA U GCU AGCA GUGAUAA AAGGU@LB@ ||||::| ||| | ||: |:|| ||||:|| ||||:@LB@ CACCGUU CGU A CGG UUGU CACUGUU UUCCG@LB@3'-UUU...UUAGU A U C G CUUUUAUUUUAGA AU UAUAUUG-5'@LB@ | |@LB@ 57 7@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -31.6141 kcal/mol@LB@Unfolding Energy - mRNA 9.34469 kcal/mol@LB@Unfolding Energy - sRNA 12.0216 kcal/mol@LB@@LB@Position - mRNA 60 -- 97@LB@Position - sRNA 8 -- 56@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 48 |
0.003417 |
0.237 |
b0002 |
thrA |
-15.68 |
0.005086 |
222 -- 242 |
46 -- 65 |
Bifunctional aspartokinase/homoserine dehydrogenase 1 |
|
_____________221___________________243\n_____________|_____________________|\n5'-CCA...UCGGC__UAC___________A____GAACG...UGG-3'\n______________GG___AUCAGUGGCAA_UGCA\n______________||___|||||||||||_||||\n______________CC___UAGUCACCGUU_ACGU\n3'-UUU...UACAA__UUU________________UACCG...UUG-5'\n_____________|_____________________|\n_____________66____________________45\n |
231 -- 237 |
50 -- 56 |
-24.9116 kcal/mol |
5.14883 kcal/mol |
4.07994 kcal/mol |
221 243@LB@ | |@LB@5'-CCA...UCGGC UAC A GAACG...UGG-3'@LB@ GG AUCAGUGGCAA UGCA@LB@ || ||||||||||| ||||@LB@ CC UAGUCACCGUU ACGU@LB@3'-UUU...UACAA UUU UACCG...UUG-5'@LB@ | |@LB@ 66 45@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -24.9116 kcal/mol@LB@Unfolding Energy - mRNA 5.14883 kcal/mol@LB@Unfolding Energy - sRNA 4.07994 kcal/mol@LB@@LB@Position - mRNA 222 -- 242@LB@Position - sRNA 46 -- 65@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 85 |
0.007532 |
0.2889 |
b4252 |
tabA |
-7.64 |
0.334848 |
14 -- 22 |
41 -- 49 |
biofilm modulator regulated by toxins; DUF386 family protein cupin superfamily protein |
|
_____________13________23\n_____________|_________|\n5'-UCU...ACAGC_________GGGGG...CAA-3'\n______________UGCAAUGGC\n______________|||||||||\n______________ACGUUACCG\n3'-UUU...CCGUU_________GGUUG...UUG-5'\n_____________|_________|\n_____________50________40\n |
16 -- 22 |
41 -- 47 |
-14.0816 kcal/mol |
4.16801 kcal/mol |
2.27678 kcal/mol |
13 23@LB@ | |@LB@5'-UCU...ACAGC GGGGG...CAA-3'@LB@ UGCAAUGGC@LB@ |||||||||@LB@ ACGUUACCG@LB@3'-UUU...CCGUU GGUUG...UUG-5'@LB@ | |@LB@ 50 40@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -14.0816 kcal/mol@LB@Unfolding Energy - mRNA 4.16801 kcal/mol@LB@Unfolding Energy - sRNA 2.27678 kcal/mol@LB@@LB@Position - mRNA 14 -- 22@LB@Position - sRNA 41 -- 49@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 185 |
0.02287 |
0.4143 |
b3460 |
livJ |
-12.49 |
0.033972 |
245 -- 276 |
28 -- 54 |
branched-chain amino acid ABC transporter periplasmic binding protein |
|
_____________244______________________________277\n_____________|________________________________|\n5'-AAU...GCGCU____UUCA___AU_______U___________UUAAA...CAA-3'\n______________GGCA____GCA__AUGGCUC_GGCAGAAGAUA\n______________||||____|||__|||||:|_::|||||:|||\n______________CCGU____CGU__UACCGGG_UUGUCUUUUAU\n3'-UUU...AGUCA____UA__________________________UUUAG...UUG-5'\n_____________|________________________________|\n_____________55_______________________________27\n |
258 -- 264 |
39 -- 45 |
-29.3573 kcal/mol |
7.88401 kcal/mol |
8.98285 kcal/mol |
244 277@LB@ | |@LB@5'-AAU...GCGCU UUCA AU U UUAAA...CAA-3'@LB@ GGCA GCA AUGGCUC GGCAGAAGAUA@LB@ |||| ||| |||||:| ::|||||:|||@LB@ CCGU CGU UACCGGG UUGUCUUUUAU@LB@3'-UUU...AGUCA UA UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -29.3573 kcal/mol@LB@Unfolding Energy - mRNA 7.88401 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 245 -- 276@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 39 -- 45@LB@ |
