57 |
0.002825 |
0.1597 |
b2233 |
yfaL |
-10.30 |
0.013161 |
220 -- 233 |
34 -- 47 |
adhesin |
|
_____________219____________234\n_____________|______________|\n5'-UAU...UCUAC______________UCUUU...CAU-3'\n______________GCAAGGAGUAUUUA\n______________|||||:||:|:|||\n______________CGUUCUUCGUGAAU\n3'-UUU...GAAUU______________UUUUU...CAA-5'\n_____________|______________|\n_____________48_____________33\n |
227 -- 233 |
34 -- 40 |
-18.4969 kcal/mol |
2.11117 kcal/mol |
6.08192 kcal/mol |
219 234@LB@ | |@LB@5'-UAU...UCUAC UCUUU...CAU-3'@LB@ GCAAGGAGUAUUUA@LB@ |||||:||:|:|||@LB@ CGUUCUUCGUGAAU@LB@3'-UUU...GAAUU UUUUU...CAA-5'@LB@ | |@LB@ 48 33@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -18.4969 kcal/mol@LB@Unfolding Energy - mRNA 2.11117 kcal/mol@LB@Unfolding Energy - sRNA 6.08192 kcal/mol@LB@@LB@Position - mRNA 220 -- 233@LB@Position - sRNA 34 -- 47@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 34 -- 40@LB@ |
107 |
0.009263 |
0.2693 |
b3034 |
nudF |
-7.86 |
0.065629 |
202 -- 214 |
42 -- 54 |
ADP-ribose pyrophosphatase |
|
_____________201___________215\n_____________|_____________|\n5'-AUU...AACAA_________C___CAACC...UUU-3'\n______________UGCUUAAGC_AGA\n______________|||||||||_|||\n______________ACGAAUUCG_UCU\n3'-UUU...UUUGA_________U___UCGUG...CAA-5'\n_____________|_____________|\n_____________55____________41\n |
204 -- 210 |
46 -- 52 |
-15.7149 kcal/mol |
1.83586 kcal/mol |
6.01534 kcal/mol |
201 215@LB@ | |@LB@5'-AUU...AACAA C CAACC...UUU-3'@LB@ UGCUUAAGC AGA@LB@ ||||||||| |||@LB@ ACGAAUUCG UCU@LB@3'-UUU...UUUGA U UCGUG...CAA-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -7.86 kcal/mol@LB@Hybridization Energy -15.7149 kcal/mol@LB@Unfolding Energy - mRNA 1.83586 kcal/mol@LB@Unfolding Energy - sRNA 6.01534 kcal/mol@LB@@LB@Position - mRNA 202 -- 214@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 46 -- 52@LB@ |
165 |
0.01827 |
0.3566 |
b2937 |
speB |
-7.30 |
0.092452 |
5 -- 22 |
25 -- 41 |
agmatinase |
|
_____________4__________________23\n_____________|__________________|\n_______5'-CAAC___UC_____________AGGCA...CAG-3'\n______________AGU__CUUGAAGAGUUCG\n______________||:__|||:||:|:||||\n______________UCG__GAAUUUUUUAAGC\n3'-UUU...GUUCU___U______________AAUGU...CAA-5'\n_____________|__________________|\n_____________42_________________24\n |
16 -- 22 |
25 -- 31 |
-14.9284 kcal/mol |
5.98061 kcal/mol |
1.64839 kcal/mol |
4 23@LB@ | |@LB@ 5'-CAAC UC AGGCA...CAG-3'@LB@ AGU CUUGAAGAGUUCG@LB@ ||: |||:||:|:||||@LB@ UCG GAAUUUUUUAAGC@LB@3'-UUU...GUUCU U AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -7.30 kcal/mol@LB@Hybridization Energy -14.9284 kcal/mol@LB@Unfolding Energy - mRNA 5.98061 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 5 -- 22@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 25 -- 31@LB@ |
103 |
0.00845 |
0.2642 |
b0936 |
ssuA |
-4.91 |
0.333979 |
11 -- 31 |
10 -- 40 |
aliphatic sulfonate ABC transporter periplasmic binding protein |
|
_____________10______________________________32\n_____________|_______________________________|\n5'-AGU...UAAGC_______________________________CUGCA...AUC-3'\n______________GCAC_UGAAA________GC_UCAGGAGAUC\n______________||||_|:|||________:|_:|||||:|||\n______________CGUG_AUUUU________UG_GGUCCUUUAG\n3'-UUU...UUCUU____A_____UUAAGCAA__U__________ACUAC...CAA-5'\n_____________|_______________________________|\n_____________41______________________________9\n |
25 -- 31 |
10 -- 16 |
-20.0893 kcal/mol |
5.95403 kcal/mol |
9.22048 kcal/mol |
10 32@LB@ | |@LB@5'-AGU...UAAGC CUGCA...AUC-3'@LB@ GCAC UGAAA GC UCAGGAGAUC@LB@ |||| |:||| :| :|||||:|||@LB@ CGUG AUUUU UG GGUCCUUUAG@LB@3'-UUU...UUCUU A UUAAGCAA U ACUAC...CAA-5'@LB@ | |@LB@ 41 9@LB@@LB@@LB@Energy -4.91 kcal/mol@LB@Hybridization Energy -20.0893 kcal/mol@LB@Unfolding Energy - mRNA 5.95403 kcal/mol@LB@Unfolding Energy - sRNA 9.22048 kcal/mol@LB@@LB@Position - mRNA 11 -- 31@LB@Position - sRNA 10 -- 40@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 10 -- 16@LB@ |
154 |
0.01606 |
0.3359 |
b2587 |
kgtP |
-4.55 |
0.394910 |
6 -- 12 |
52 -- 58 |
alpha-ketoglutarate transporter |
|
_____________5_______13\n_____________|_______|\n______5'-UCCCC_______CCACU...UCG-3'\n______________AACUUGC\n______________|||||||\n______________UUGAACG\n3'-UUU...CUACU_______AAUUC...CAA-5'\n_____________|_______|\n_____________59______51\n |
6 -- 12 |
52 -- 58 |
-7.82918 kcal/mol |
0.15004 kcal/mol |
3.13411 kcal/mol |
5 13@LB@ | |@LB@ 5'-UCCCC CCACU...UCG-3'@LB@ AACUUGC@LB@ |||||||@LB@ UUGAACG@LB@3'-UUU...CUACU AAUUC...CAA-5'@LB@ | |@LB@ 59 51@LB@@LB@@LB@Energy -4.55 kcal/mol@LB@Hybridization Energy -7.82918 kcal/mol@LB@Unfolding Energy - mRNA 0.15004 kcal/mol@LB@Unfolding Energy - sRNA 3.13411 kcal/mol@LB@@LB@Position - mRNA 6 -- 12@LB@Position - sRNA 52 -- 58@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 52 -- 58@LB@ |
106 |
0.009044 |
0.2693 |
b3360 |
pabA |
-9.65 |
0.020637 |
134 -- 165 |
7 -- 41 |
aminodeoxychorismate synthase subunit II |
|
_____________133_________________________________166\n_____________|___________________________________|\n5'-GCG...UAUUU____AAGUGGUAAG___AA________________GUAAA...CGU-3'\n______________AGCA___________CG____GCCGGGGAAUCUGA\n______________||||___________||____:||:||:|||||||\n______________UCGU___________GC____UGGUCCUUUAGACU\n3'-UUU...GUUCU____GAAUUUUUUAA__AAUG______________ACACAA-5'\n_____________|___________________________________|\n_____________42__________________________________6\n |
156 -- 162 |
10 -- 16 |
-26.3396 kcal/mol |
7.46958 kcal/mol |
9.22092 kcal/mol |
133 166@LB@ | |@LB@5'-GCG...UAUUU AAGUGGUAAG AA GUAAA...CGU-3'@LB@ AGCA CG GCCGGGGAAUCUGA@LB@ |||| || :||:||:|||||||@LB@ UCGU GC UGGUCCUUUAGACU@LB@3'-UUU...GUUCU GAAUUUUUUAA AAUG ACACAA-5'@LB@ | |@LB@ 42 6@LB@@LB@@LB@Energy -9.65 kcal/mol@LB@Hybridization Energy -26.3396 kcal/mol@LB@Unfolding Energy - mRNA 7.46958 kcal/mol@LB@Unfolding Energy - sRNA 9.22092 kcal/mol@LB@@LB@Position - mRNA 134 -- 165@LB@Position - sRNA 7 -- 41@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 10 -- 16@LB@ |
180 |
0.02111 |
0.3768 |
b2753 |
iap |
-4.77 |
0.357003 |
164 -- 179 |
25 -- 40 |
aminopeptidase in alkaline phosphatase isozyme conversion |
|
_____________163______________180\n_____________|________________|\n5'-UAG...CUAUG___G_A__________CAUGG...CUA-3'\n______________GCG_U_AAAAAAUUUG\n______________||:_|_||||||||:|\n______________CGU_A_UUUUUUAAGC\n3'-UUU...UUCUU___G_A__________AAUGU...CAA-5'\n_____________|________________|\n_____________41_______________24\n |
170 -- 176 |
28 -- 34 |
-8.71545 kcal/mol |
2.29678 kcal/mol |
1.64821 kcal/mol |
163 180@LB@ | |@LB@5'-UAG...CUAUG G A CAUGG...CUA-3'@LB@ GCG U AAAAAAUUUG@LB@ ||: | ||||||||:|@LB@ CGU A UUUUUUAAGC@LB@3'-UUU...UUCUU G A AAUGU...CAA-5'@LB@ | |@LB@ 41 24@LB@@LB@@LB@Energy -4.77 kcal/mol@LB@Hybridization Energy -8.71545 kcal/mol@LB@Unfolding Energy - mRNA 2.29678 kcal/mol@LB@Unfolding Energy - sRNA 1.64821 kcal/mol@LB@@LB@Position - mRNA 164 -- 179@LB@Position - sRNA 25 -- 40@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 28 -- 34@LB@ |
17 |
0.0004446 |
0.08107 |
b1976 |
mtfA |
-9.25 |
0.026966 |
241 -- 268 |
36 -- 59 |
anti-repressor for DgsA(Mlc) |
|
_____________240___________________________269\n_____________|_____________________________|\n5'-AUA...ACAUC________CCUUCCCU_____________AUCGA...AAC-3'\n______________AAAC_UGC________GGCAGGAAGCACU\n______________||||_|||________:|||:||||||||\n______________UUUG_ACG________UCGUUCUUCGUGA\n3'-UUU...CCUAC____A___AAU__________________AUUUU...CAA-5'\n_____________|_____________________________|\n_____________60____________________________35\n |
262 -- 268 |
36 -- 42 |
-23.9855 kcal/mol |
8.48573 kcal/mol |
6.24948 kcal/mol |
240 269@LB@ | |@LB@5'-AUA...ACAUC CCUUCCCU AUCGA...AAC-3'@LB@ AAAC UGC GGCAGGAAGCACU@LB@ |||| ||| :|||:||||||||@LB@ UUUG ACG UCGUUCUUCGUGA@LB@3'-UUU...CCUAC A AAU AUUUU...CAA-5'@LB@ | |@LB@ 60 35@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -23.9855 kcal/mol@LB@Unfolding Energy - mRNA 8.48573 kcal/mol@LB@Unfolding Energy - sRNA 6.24948 kcal/mol@LB@@LB@Position - mRNA 241 -- 268@LB@Position - sRNA 36 -- 59@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 36 -- 42@LB@ |
200 |
0.02417 |
0.3893 |
b1747 |
astA |
-6.36 |
0.159223 |
49 -- 56 |
39 -- 46 |
arginine succinyltransferase |
|
_____________48_______57\n_____________|________|\n5'-GGC...UCUCU________GGCGA...AAG-3'\n______________CAGGAAGC\n______________||:|||||\n______________GUUCUUCG\n3'-UUU...AAUUC________UGAAU...CAA-5'\n_____________|________|\n_____________47_______38\n |
50 -- 56 |
39 -- 45 |
-10.5455 kcal/mol |
1.56403 kcal/mol |
2.62555 kcal/mol |
48 57@LB@ | |@LB@5'-GGC...UCUCU GGCGA...AAG-3'@LB@ CAGGAAGC@LB@ ||:|||||@LB@ GUUCUUCG@LB@3'-UUU...AAUUC UGAAU...CAA-5'@LB@ | |@LB@ 47 38@LB@@LB@@LB@Energy -6.36 kcal/mol@LB@Hybridization Energy -10.5455 kcal/mol@LB@Unfolding Energy - mRNA 1.56403 kcal/mol@LB@Unfolding Energy - sRNA 2.62555 kcal/mol@LB@@LB@Position - mRNA 49 -- 56@LB@Position - sRNA 39 -- 46@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 39 -- 45@LB@ |
91 |
0.006547 |
0.2317 |
b1323 |
tyrR |
-8.26 |
0.051378 |
202 -- 222 |
3 -- 23 |
aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
|
_____________201___________________223\n_____________|_____________________|\n5'-UCG...UCCCA______U________UU____AAGAC...UUG-3'\n______________UGCGUC_GGAAGUCU__UGUG\n______________|:|::|_||||:|||__||||\n______________AUGUGG_CCUUUAGA__ACAC\n3'-UUU...AAGCA______U________CU____AA-5'\n_____________|_____________________|\n_____________24____________________2\n |
209 -- 215 |
10 -- 16 |
-19.6247 kcal/mol |
3.79223 kcal/mol |
7.5769 kcal/mol |
201 223@LB@ | |@LB@5'-UCG...UCCCA U UU AAGAC...UUG-3'@LB@ UGCGUC GGAAGUCU UGUG@LB@ |:|::| ||||:||| ||||@LB@ AUGUGG CCUUUAGA ACAC@LB@3'-UUU...AAGCA U CU AA-5'@LB@ | |@LB@ 24 2@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -19.6247 kcal/mol@LB@Unfolding Energy - mRNA 3.79223 kcal/mol@LB@Unfolding Energy - sRNA 7.5769 kcal/mol@LB@@LB@Position - mRNA 202 -- 222@LB@Position - sRNA 3 -- 23@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 10 -- 16@LB@ |