| 60 |
0.001013 |
0.05816 |
b2207 |
napD |
-8.99 |
0.186283 |
27 -- 46 |
75 -- 92 |
assembly protein for periplasmic nitrate reductase |
|
_____________26___________________47\n_____________|____________________|\n5'-GUU...CCUGG_____C_________AA___CGCCG...AAG-3'\n______________CGUAU_AGUCAGUUG__UGC\n______________||||:_|:|||:|||__|||\n______________GCAUG_UUAGUUAAC__ACG\n3'-UUU...CCGCA_____C______________AUACG...ACG-5'\n_____________|____________________|\n_____________93___________________74\n |
35 -- 41 |
78 -- 84 |
-16.0375 kcal/mol |
4.6767 kcal/mol |
2.37539 kcal/mol |
26 47@LB@ | |@LB@5'-GUU...CCUGG C AA CGCCG...AAG-3'@LB@ CGUAU AGUCAGUUG UGC@LB@ ||||: |:|||:||| |||@LB@ GCAUG UUAGUUAAC ACG@LB@3'-UUU...CCGCA C AUACG...ACG-5'@LB@ | |@LB@ 93 74@LB@@LB@@LB@Energy -8.99 kcal/mol@LB@Hybridization Energy -16.0375 kcal/mol@LB@Unfolding Energy - mRNA 4.6767 kcal/mol@LB@Unfolding Energy - sRNA 2.37539 kcal/mol@LB@@LB@Position - mRNA 27 -- 46@LB@Position - sRNA 75 -- 92@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 97 |
0.002994 |
0.1087 |
b1452 |
yncE |
-13.85 |
0.010262 |
151 -- 196 |
50 -- 89 |
ATP-binding protein periplasmic function unknown |
|
_____________150_______________________________________________197\n_____________|_________________________________________________|\n5'-AUG...GCUUA_____GC_______AA______CAAAAAUAUC______UC_________CGUCA...AAA-3'\n______________GCGAA___AUUGUG____GCAG__________GGUUCA__AAAGGGAGU\n______________:||||___||||||____||||__________::||||__|||||:|||\n______________UGCUU___UAACAC____CGUC__________UUAAGU__UUUCCUUCA\n3'-UUU...CAGCA_____AGU______GAUA____A_______________UU_________UUCUG...ACG-5'\n_____________|_________________________________________________|\n_____________90________________________________________________49\n |
190 -- 196 |
50 -- 56 |
-28.7036 kcal/mol |
10.1778 kcal/mol |
4.68197 kcal/mol |
150 197@LB@ | |@LB@5'-AUG...GCUUA GC AA CAAAAAUAUC UC CGUCA...AAA-3'@LB@ GCGAA AUUGUG GCAG GGUUCA AAAGGGAGU@LB@ :|||| |||||| |||| ::|||| |||||:|||@LB@ UGCUU UAACAC CGUC UUAAGU UUUCCUUCA@LB@3'-UUU...CAGCA AGU GAUA A UU UUCUG...ACG-5'@LB@ | |@LB@ 90 49@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -28.7036 kcal/mol@LB@Unfolding Energy - mRNA 10.1778 kcal/mol@LB@Unfolding Energy - sRNA 4.68197 kcal/mol@LB@@LB@Position - mRNA 151 -- 196@LB@Position - sRNA 50 -- 89@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 43 |
0.0004177 |
0.03347 |
b3652 |
recG |
-10.52 |
0.082371 |
49 -- 71 |
17 -- 38 |
ATP-dependent DNA helicase |
|
_____________48______________________72\n_____________|_______________________|\n5'-CAA...AAGCA____AA_________________AGGCG...UGC-3'\n______________GAGC__CAACGCCUGUUGUUUGA\n______________||||__|||||||::|:|:||||\n______________CUCG__GUUGCGGGUAGCGAACU\n3'-UUU...UAUAC____C__________________GCAAC...ACG-5'\n_____________|_______________________|\n_____________39______________________16\n |
63 -- 69 |
19 -- 25 |
-31.2627 kcal/mol |
8.52631 kcal/mol |
12.2147 kcal/mol |
48 72@LB@ | |@LB@5'-CAA...AAGCA AA AGGCG...UGC-3'@LB@ GAGC CAACGCCUGUUGUUUGA@LB@ |||| |||||||::|:|:||||@LB@ CUCG GUUGCGGGUAGCGAACU@LB@3'-UUU...UAUAC C GCAAC...ACG-5'@LB@ | |@LB@ 39 16@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -31.2627 kcal/mol@LB@Unfolding Energy - mRNA 8.52631 kcal/mol@LB@Unfolding Energy - sRNA 12.2147 kcal/mol@LB@@LB@Position - mRNA 49 -- 71@LB@Position - sRNA 17 -- 38@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 134 |
0.004994 |
0.1313 |
b1518 |
lsrG |
-14.53 |
0.006358 |
14 -- 66 |
30 -- 79 |
autoinducer-2 (AI-2) degrading protein LsrG |
|
_____________13_______________________________________________________67\n_____________|________________________________________________________|\n5'-GAG...GGAAA____________GCUA____UC____CGCUUCU____UG_________________AUUUU...AAG-3'\n______________UGUGCUG_GCAG____UCGA__AGGG_______GGUG____GAUAUGGGGCGUAAU\n______________||||||:_||||____||:|__|:||_______:||:____:||||||:|||:||:\n______________ACACGAU_CGUC____AGUU__UUCC_______UCAU____UUAUACCUCGCGUUG\n3'-UUU...AGUUA_______A____AUUA____UU____U__________UCUG_______________CGGGU...ACG-5'\n_____________|________________________________________________________|\n_____________80_______________________________________________________29\n |
58 -- 64 |
32 -- 38 |
-43.6874 kcal/mol |
15.7058 kcal/mol |
13.4555 kcal/mol |
13 67@LB@ | |@LB@5'-GAG...GGAAA GCUA UC CGCUUCU UG AUUUU...AAG-3'@LB@ UGUGCUG GCAG UCGA AGGG GGUG GAUAUGGGGCGUAAU@LB@ ||||||: |||| ||:| |:|| :||: :||||||:|||:||:@LB@ ACACGAU CGUC AGUU UUCC UCAU UUAUACCUCGCGUUG@LB@3'-UUU...AGUUA A AUUA UU U UCUG CGGGU...ACG-5'@LB@ | |@LB@ 80 29@LB@@LB@@LB@Energy -14.53 kcal/mol@LB@Hybridization Energy -43.6874 kcal/mol@LB@Unfolding Energy - mRNA 15.7058 kcal/mol@LB@Unfolding Energy - sRNA 13.4555 kcal/mol@LB@@LB@Position - mRNA 14 -- 66@LB@Position - sRNA 30 -- 79@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 173 |
0.007186 |
0.145 |
b3554 |
yiaF |
-10.99 |
0.063148 |
166 -- 198 |
46 -- 94 |
barrier effect co-colonization resistance factor; DUF3053 family lipoprotein |
|
_____________165_______________________________________________199\n_____________|_________________________________________________|\n5'-AAU...GUGUC________CU__UU___G_______________________________AAAUG...AGC-3'\n______________GUUGUGCG__UU__UUG_GU_______________GAAAGG_AGUAAGA\n______________||:||:||__|:__|||_|:_______________:|||||_|||||||\n______________CAGCAUGC__AG__AAC_CG_______________UUUUCC_UCAUUCU\n3'-UUU...AGCCG________UU__UU___A__AUACGUCAUUAAGUU______U_______GUUAU...ACG-5'\n_____________|_________________________________________________|\n_____________95________________________________________________45\n |
192 -- 198 |
46 -- 52 |
-24.2986 kcal/mol |
7.73667 kcal/mol |
5.5768 kcal/mol |
165 199@LB@ | |@LB@5'-AAU...GUGUC CU UU G AAAUG...AGC-3'@LB@ GUUGUGCG UU UUG GU GAAAGG AGUAAGA@LB@ ||:||:|| |: ||| |: :||||| |||||||@LB@ CAGCAUGC AG AAC CG UUUUCC UCAUUCU@LB@3'-UUU...AGCCG UU UU A AUACGUCAUUAAGUU U GUUAU...ACG-5'@LB@ | |@LB@ 95 45@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -24.2986 kcal/mol@LB@Unfolding Energy - mRNA 7.73667 kcal/mol@LB@Unfolding Energy - sRNA 5.5768 kcal/mol@LB@@LB@Position - mRNA 166 -- 198@LB@Position - sRNA 46 -- 94@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 37 |
0.0003128 |
0.02889 |
b1107 |
nagZ |
-10.24 |
0.096497 |
189 -- 204 |
38 -- 57 |
beta N-acetyl-glucosaminidase |
|
_____________188__________________205\n_____________|____________________|\n5'-AUU...ACAAU____________________GUCCA...CGC-3'\n______________AAGGA___GAG_CAGUGUGG\n______________|||||___:||_||:|:|||\n______________UUCCU___UUC_GUUAUACC\n3'-UUU...GUUUU_____UCA___U________UCGCG...ACG-5'\n_____________|____________________|\n_____________58___________________37\n |
198 -- 204 |
38 -- 44 |
-15.5747 kcal/mol |
1.78066 kcal/mol |
3.52446 kcal/mol |
188 205@LB@ | |@LB@5'-AUU...ACAAU GUCCA...CGC-3'@LB@ AAGGA GAG CAGUGUGG@LB@ ||||| :|| ||:|:|||@LB@ UUCCU UUC GUUAUACC@LB@3'-UUU...GUUUU UCA U UCGCG...ACG-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -15.5747 kcal/mol@LB@Unfolding Energy - mRNA 1.78066 kcal/mol@LB@Unfolding Energy - sRNA 3.52446 kcal/mol@LB@@LB@Position - mRNA 189 -- 204@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 10 |
1.762e-05 |
0.005627 |
b1112 |
bhsA |
-13.86 |
0.010205 |
165 -- 186 |
1 -- 22 |
biofilm cell surface and signaling protein |
b0806 b0802 |
_____________164_____________________187\n_____________|_______________________|\n5'-UAA...UAAUU________AC_U___________AUAAG...AAC-3'\n______________GCUUG_CG__G_CAUUCAUCUGC\n______________|||||_||__|_||||||:||||\n______________CGAAC_GC__C_GUAAGUGGACG\n3'-UUU...GGUAG_____U__AA_____________-5'\n_____________|______________________|\n_____________23_____________________1\n |
180 -- 186 |
1 -- 7 |
-25.8922 kcal/mol |
3.94114 kcal/mol |
8.09964 kcal/mol |
164 187@LB@ | |@LB@5'-UAA...UAAUU AC U AUAAG...AAC-3'@LB@ GCUUG CG G CAUUCAUCUGC@LB@ ||||| || | ||||||:||||@LB@ CGAAC GC C GUAAGUGGACG@LB@3'-UUU...GGUAG U AA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.86 kcal/mol@LB@Hybridization Energy -25.8922 kcal/mol@LB@Unfolding Energy - mRNA 3.94114 kcal/mol@LB@Unfolding Energy - sRNA 8.09964 kcal/mol@LB@@LB@Position - mRNA 165 -- 186@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 144 |
0.005571 |
0.1363 |
b1843 |
yobB |
-15.05 |
0.004361 |
174 -- 196 |
50 -- 72 |
C-N hydrolase family protein |
|
_____________173_____________________197\n_____________|_______________________|\n5'-CCU...UAAUU______C____U___________CAUUA...CCA-3'\n______________UGCAGU_AUUU_GAAAAGGAAGU\n______________||||||_|||:_:||||||||||\n______________ACGUCA_UAAG_UUUUUCCUUCA\n3'-UUU...ACGAU______U____U___________UUCUG...ACG-5'\n_____________|_______________________|\n_____________73______________________49\n |
190 -- 196 |
50 -- 56 |
-24.355 kcal/mol |
5.29079 kcal/mol |
4.01539 kcal/mol |
173 197@LB@ | |@LB@5'-CCU...UAAUU C U CAUUA...CCA-3'@LB@ UGCAGU AUUU GAAAAGGAAGU@LB@ |||||| |||: :||||||||||@LB@ ACGUCA UAAG UUUUUCCUUCA@LB@3'-UUU...ACGAU U U UUCUG...ACG-5'@LB@ | |@LB@ 73 49@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -24.355 kcal/mol@LB@Unfolding Energy - mRNA 5.29079 kcal/mol@LB@Unfolding Energy - sRNA 4.01539 kcal/mol@LB@@LB@Position - mRNA 174 -- 196@LB@Position - sRNA 50 -- 72@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 34 |
0.0002646 |
0.02697 |
b1206 |
dauA |
-13.80 |
0.010599 |
120 -- 158 |
1 -- 34 |
C4-dicarboxylic acid transporter |
|
_____________119_____________________________________159\n_____________|_______________________________________|\n5'-CCU...UGUCU_____A____U____A____CUA___CUCC_________CAUUU...UGA-3'\n______________GUAAU_UCCA_UUGU_UGAC___UGC____UUCACCUGC\n______________|:||:_:|||_|:|:_||||___|||____|||||||||\n______________CGUUG_GGGU_AGCG_ACUG___ACG____AAGUGGACG\n3'-UUU...CCUCG_____C_________A____CA____U____________-5'\n_____________|______________________________________|\n_____________35_____________________________________1\n |
152 -- 158 |
1 -- 7 |
-32.3364 kcal/mol |
3.2737 kcal/mol |
15.2664 kcal/mol |
119 159@LB@ | |@LB@5'-CCU...UGUCU A U A CUA CUCC CAUUU...UGA-3'@LB@ GUAAU UCCA UUGU UGAC UGC UUCACCUGC@LB@ |:||: :||| |:|: |||| ||| |||||||||@LB@ CGUUG GGGU AGCG ACUG ACG AAGUGGACG@LB@3'-UUU...CCUCG C A CA U -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -32.3364 kcal/mol@LB@Unfolding Energy - mRNA 3.2737 kcal/mol@LB@Unfolding Energy - sRNA 15.2664 kcal/mol@LB@@LB@Position - mRNA 120 -- 158@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 114 |
0.00366 |
0.1131 |
b0162 |
cdaR |
-8.46 |
0.240590 |
33 -- 47 |
64 -- 77 |
carbohydrate diacid regulon transcriptional regulator; autoregulator |
|
_____________32______________48\n_____________|_______________|\n5'-CAA...CUACC____A__________CUCCC...GGC-3'\n______________UGUU_AUGCAGUAAU\n______________||:|_||||||||||\n______________ACGA_UACGUCAUUA\n3'-UUU...UUAAC_______________AGUUU...ACG-5'\n_____________|_______________|\n_____________78______________63\n |
41 -- 47 |
64 -- 70 |
-14.8052 kcal/mol |
3.39589 kcal/mol |
2.94867 kcal/mol |
32 48@LB@ | |@LB@5'-CAA...CUACC A CUCCC...GGC-3'@LB@ UGUU AUGCAGUAAU@LB@ ||:| ||||||||||@LB@ ACGA UACGUCAUUA@LB@3'-UUU...UUAAC AGUUU...ACG-5'@LB@ | |@LB@ 78 63@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -14.8052 kcal/mol@LB@Unfolding Energy - mRNA 3.39589 kcal/mol@LB@Unfolding Energy - sRNA 2.94867 kcal/mol@LB@@LB@Position - mRNA 33 -- 47@LB@Position - sRNA 64 -- 77@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 64 -- 70@LB@ |
