17 |
0.0004446 |
0.08107 |
b1976 |
mtfA |
-9.25 |
0.026966 |
241 -- 268 |
36 -- 59 |
anti-repressor for DgsA(Mlc) |
|
_____________240___________________________269\n_____________|_____________________________|\n5'-AUA...ACAUC________CCUUCCCU_____________AUCGA...AAC-3'\n______________AAAC_UGC________GGCAGGAAGCACU\n______________||||_|||________:|||:||||||||\n______________UUUG_ACG________UCGUUCUUCGUGA\n3'-UUU...CCUAC____A___AAU__________________AUUUU...CAA-5'\n_____________|_____________________________|\n_____________60____________________________35\n |
262 -- 268 |
36 -- 42 |
-23.9855 kcal/mol |
8.48573 kcal/mol |
6.24948 kcal/mol |
240 269@LB@ | |@LB@5'-AUA...ACAUC CCUUCCCU AUCGA...AAC-3'@LB@ AAAC UGC GGCAGGAAGCACU@LB@ |||| ||| :|||:||||||||@LB@ UUUG ACG UCGUUCUUCGUGA@LB@3'-UUU...CCUAC A AAU AUUUU...CAA-5'@LB@ | |@LB@ 60 35@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -23.9855 kcal/mol@LB@Unfolding Energy - mRNA 8.48573 kcal/mol@LB@Unfolding Energy - sRNA 6.24948 kcal/mol@LB@@LB@Position - mRNA 241 -- 268@LB@Position - sRNA 36 -- 59@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 36 -- 42@LB@ |
20 |
0.0005034 |
0.08107 |
b3962 |
sthA |
-8.00 |
0.060263 |
274 -- 291 |
37 -- 54 |
pyridine nucleotide transhydrogenase soluble |
|
_____________273________________292\n_____________|__________________|\n5'-UAC...GGGCC__G__________U____GCGUC...CAG-3'\n______________UG_UUAAGCAAGG_GCGC\n______________||_|||||||||:_||:|\n______________AC_AAUUCGUUCU_CGUG\n3'-UUU...UUUGA__G__________U____AAUUU...CAA-5'\n_____________|__________________|\n_____________55_________________36\n |
280 -- 286 |
42 -- 48 |
-21.3093 kcal/mol |
7.14965 kcal/mol |
6.1584 kcal/mol |
273 292@LB@ | |@LB@5'-UAC...GGGCC G U GCGUC...CAG-3'@LB@ UG UUAAGCAAGG GCGC@LB@ || |||||||||: ||:|@LB@ AC AAUUCGUUCU CGUG@LB@3'-UUU...UUUGA G U AAUUU...CAA-5'@LB@ | |@LB@ 55 36@LB@@LB@@LB@Energy -8.00 kcal/mol@LB@Hybridization Energy -21.3093 kcal/mol@LB@Unfolding Energy - mRNA 7.14965 kcal/mol@LB@Unfolding Energy - sRNA 6.1584 kcal/mol@LB@@LB@Position - mRNA 274 -- 291@LB@Position - sRNA 37 -- 54@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 42 -- 48@LB@ |
21 |
0.000535 |
0.08206 |
b1639 |
mliC |
-10.27 |
0.013452 |
27 -- 40 |
8 -- 21 |
inhibitor of c-type lysozyme membrane-bound; putative lipoprotein |
|
_____________26_____________41\n_____________|______________|\n5'-GCU...GGGAU______________CCUUC...UGG-3'\n______________UACCAGGAAAUCUG\n______________:|||||||||||||\n______________GUGGUCCUUUAGAC\n3'-UUU...GCAAU______________UACACAA-5'\n_____________|______________|\n_____________22_____________7\n |
32 -- 38 |
10 -- 16 |
-22.0821 kcal/mol |
4.25106 kcal/mol |
7.55865 kcal/mol |
26 41@LB@ | |@LB@5'-GCU...GGGAU CCUUC...UGG-3'@LB@ UACCAGGAAAUCUG@LB@ :|||||||||||||@LB@ GUGGUCCUUUAGAC@LB@3'-UUU...GCAAU UACACAA-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -22.0821 kcal/mol@LB@Unfolding Energy - mRNA 4.25106 kcal/mol@LB@Unfolding Energy - sRNA 7.55865 kcal/mol@LB@@LB@Position - mRNA 27 -- 40@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 10 -- 16@LB@ |
30 |
0.0008402 |
0.09021 |
b2792 |
yqcC |
-12.92 |
0.001907 |
10 -- 25 |
38 -- 53 |
DUF446 family protein |
|
_____________9________________26\n_____________|________________|\n5'-AUC...GGGUG__G_____________AUAGU...AAU-3'\n______________GU_UGAGCAGGAAGCA\n______________|:_|:||||:||||||\n______________CG_AUUCGUUCUUCGU\n3'-UUU...UUGAA__A_____________GAAUU...CAA-5'\n_____________|________________|\n_____________54_______________37\n |
19 -- 25 |
38 -- 44 |
-21.2799 kcal/mol |
2.27149 kcal/mol |
6.09301 kcal/mol |
9 26@LB@ | |@LB@5'-AUC...GGGUG G AUAGU...AAU-3'@LB@ GU UGAGCAGGAAGCA@LB@ |: |:||||:||||||@LB@ CG AUUCGUUCUUCGU@LB@3'-UUU...UUGAA A GAAUU...CAA-5'@LB@ | |@LB@ 54 37@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -21.2799 kcal/mol@LB@Unfolding Energy - mRNA 2.27149 kcal/mol@LB@Unfolding Energy - sRNA 6.09301 kcal/mol@LB@@LB@Position - mRNA 10 -- 25@LB@Position - sRNA 38 -- 53@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 38 -- 44@LB@ |
25 |
0.0007384 |
0.09021 |
b3434 |
yhgN |
-11.94 |
0.004015 |
159 -- 197 |
7 -- 41 |
UPF0056 family inner membrane protein |
|
_____________158_____________________________________198\n_____________|_______________________________________|\n5'-UUU...UUGUU_____GC_______CCG__GCAAU_______________GUUAU...CGA-3'\n______________AGCAC__AGAAAGU___CG_____UAUCAGGGAAUUUGA\n______________|||||__|:|||:|___||_____:|:||||:|||:|||\n______________UCGUG__UUUUUUA___GC_____GUGGUCCUUUAGACU\n3'-UUU...GUUCU_____AA_______A____AAU_________________ACACAA-5'\n_____________|_______________________________________|\n_____________42______________________________________6\n |
188 -- 194 |
10 -- 16 |
-30.001 kcal/mol |
8.83552 kcal/mol |
9.22092 kcal/mol |
158 198@LB@ | |@LB@5'-UUU...UUGUU GC CCG GCAAU GUUAU...CGA-3'@LB@ AGCAC AGAAAGU CG UAUCAGGGAAUUUGA@LB@ ||||| |:|||:| || :|:||||:|||:|||@LB@ UCGUG UUUUUUA GC GUGGUCCUUUAGACU@LB@3'-UUU...GUUCU AA A AAU ACACAA-5'@LB@ | |@LB@ 42 6@LB@@LB@@LB@Energy -11.94 kcal/mol@LB@Hybridization Energy -30.001 kcal/mol@LB@Unfolding Energy - mRNA 8.83552 kcal/mol@LB@Unfolding Energy - sRNA 9.22092 kcal/mol@LB@@LB@Position - mRNA 159 -- 197@LB@Position - sRNA 7 -- 41@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 10 -- 16@LB@ |
29 |
0.000834 |
0.09021 |
b2798 |
ygdG |
-11.41 |
0.005967 |
211 -- 245 |
24 -- 57 |
Ssb-binding protein misidentified as ExoIX |
|
_____________210_________________________________246\n_____________|___________________________________|\n5'-CCA...UGUUC_________UUGUC__U_____GAAUCUU______CGCAU...UCG-3'\n______________AUUUGCUUA_____GA_GCACU_______AUUCGU\n______________|:|||||||_____||_|||||_______||||||\n______________UGAACGAAU_____CU_CGUGA_______UAAGCA\n3'-UUU...UACUU_________UCGUU__U_____AUUUUU_______AUGUG...CAA-5'\n_____________|___________________________________|\n_____________58__________________________________23\n |
213 -- 219 |
49 -- 55 |
-23.2646 kcal/mol |
5.57825 kcal/mol |
6.27607 kcal/mol |
210 246@LB@ | |@LB@5'-CCA...UGUUC UUGUC U GAAUCUU CGCAU...UCG-3'@LB@ AUUUGCUUA GA GCACU AUUCGU@LB@ |:||||||| || ||||| ||||||@LB@ UGAACGAAU CU CGUGA UAAGCA@LB@3'-UUU...UACUU UCGUU U AUUUUU AUGUG...CAA-5'@LB@ | |@LB@ 58 23@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -23.2646 kcal/mol@LB@Unfolding Energy - mRNA 5.57825 kcal/mol@LB@Unfolding Energy - sRNA 6.27607 kcal/mol@LB@@LB@Position - mRNA 211 -- 245@LB@Position - sRNA 24 -- 57@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 49 -- 55@LB@ |
27 |
0.0008083 |
0.09021 |
b2711 |
norW |
-10.17 |
0.014477 |
99 -- 112 |
13 -- 26 |
NADH:flavorubredoxin oxidoreductase |
|
_____________98_____________113\n_____________|______________|\n5'-GAA...CAGGA______________CGCCG...UUG-3'\n______________CGUUGCGCCAGGAA\n______________||||:|:|||||||\n______________GCAAUGUGGUCCUU\n3'-UUU...UUUAA______________UAGAC...CAA-5'\n_____________|______________|\n_____________27_____________12\n |
106 -- 112 |
13 -- 19 |
-23.5838 kcal/mol |
5.14562 kcal/mol |
8.27144 kcal/mol |
98 113@LB@ | |@LB@5'-GAA...CAGGA CGCCG...UUG-3'@LB@ CGUUGCGCCAGGAA@LB@ ||||:|:|||||||@LB@ GCAAUGUGGUCCUU@LB@3'-UUU...UUUAA UAGAC...CAA-5'@LB@ | |@LB@ 27 12@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -23.5838 kcal/mol@LB@Unfolding Energy - mRNA 5.14562 kcal/mol@LB@Unfolding Energy - sRNA 8.27144 kcal/mol@LB@@LB@Position - mRNA 99 -- 112@LB@Position - sRNA 13 -- 26@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 13 -- 19@LB@ |
26 |
0.0007705 |
0.09021 |
b3991 |
thiG |
-9.33 |
0.025562 |
246 -- 261 |
25 -- 41 |
thiamine biosynthesis ThiGH complex subunit |
|
_____________245_______________262\n_____________|_________________|\n5'-GCA...UUACC_____A___________CUUCU...CCG-3'\n______________GGCAC__GGGAAAUUCG\n______________:||||__:::|||||||\n______________UCGUG__UUUUUUAAGC\n3'-UUU...GUUCU_____AA__________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
255 -- 261 |
25 -- 31 |
-14.087 kcal/mol |
3.10801 kcal/mol |
1.64839 kcal/mol |
245 262@LB@ | |@LB@5'-GCA...UUACC A CUUCU...CCG-3'@LB@ GGCAC GGGAAAUUCG@LB@ :|||| :::|||||||@LB@ UCGUG UUUUUUAAGC@LB@3'-UUU...GUUCU AA AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -14.087 kcal/mol@LB@Unfolding Energy - mRNA 3.10801 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 246 -- 261@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 25 -- 31@LB@ |
22 |
0.0006536 |
0.09021 |
b1245 |
oppC |
-8.46 |
0.045181 |
270 -- 288 |
37 -- 58 |
oligopeptide ABC transporter permease |
|
_____________269____________________289\n_____________|______________________|\n5'-GGU...GGCGC_________________C____GUCGA...UUA-3'\n______________AGCUUGU___GGCAGGA_GCAC\n______________|:||||:___:|||:||_||||\n______________UUGAACG___UCGUUCU_CGUG\n3'-UUU...CUACU_______AAU_______U____AAUUU...CAA-5'\n_____________|______________________|\n_____________59_____________________36\n |
277 -- 283 |
42 -- 48 |
-22.602 kcal/mol |
7.90039 kcal/mol |
6.24354 kcal/mol |
269 289@LB@ | |@LB@5'-GGU...GGCGC C GUCGA...UUA-3'@LB@ AGCUUGU GGCAGGA GCAC@LB@ |:||||: :|||:|| ||||@LB@ UUGAACG UCGUUCU CGUG@LB@3'-UUU...CUACU AAU U AAUUU...CAA-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -22.602 kcal/mol@LB@Unfolding Energy - mRNA 7.90039 kcal/mol@LB@Unfolding Energy - sRNA 6.24354 kcal/mol@LB@@LB@Position - mRNA 270 -- 288@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 42 -- 48@LB@ |
23 |
0.000685 |
0.09021 |
b3780 |
rhlB |
-7.99 |
0.060609 |
254 -- 278 |
29 -- 60 |
ATP-dependent RNA helicase |
|
_____________253______________________________279\n_____________|________________________________|\n5'-UCG...CAUCC____G_________________C_________AAAGG...CGC-3'\n______________GAAG_UUGU_______AGAAGC_CUUGAAAAA\n______________|||:_|||:_______||||||_|||:|||||\n______________CUUU_AACG_______UCUUCG_GAAUUUUUU\n3'-UUU...CCCUA____G____AAUUCGU______U_________AAGCA...CAA-5'\n_____________|________________________________|\n_____________61_______________________________28\n |
270 -- 276 |
31 -- 37 |
-19.7636 kcal/mol |
5.50064 kcal/mol |
6.27092 kcal/mol |
253 279@LB@ | |@LB@5'-UCG...CAUCC G C AAAGG...CGC-3'@LB@ GAAG UUGU AGAAGC CUUGAAAAA@LB@ |||: |||: |||||| |||:|||||@LB@ CUUU AACG UCUUCG GAAUUUUUU@LB@3'-UUU...CCCUA G AAUUCGU U AAGCA...CAA-5'@LB@ | |@LB@ 61 28@LB@@LB@@LB@Energy -7.99 kcal/mol@LB@Hybridization Energy -19.7636 kcal/mol@LB@Unfolding Energy - mRNA 5.50064 kcal/mol@LB@Unfolding Energy - sRNA 6.27092 kcal/mol@LB@@LB@Position - mRNA 254 -- 278@LB@Position - sRNA 29 -- 60@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 31 -- 37@LB@ |