135 |
0.01294 |
0.3087 |
b3785 |
wzzE |
-4.46 |
0.409883 |
275 -- 291 |
39 -- 56 |
Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
|
_____________274_________________292\n_____________|___________________|\n5'-GCU...CGUAC___________U_______UAUGG...UUA-3'\n______________CUUGU__GGGC_GGGAAGC\n______________||||:__::||_::|||||\n______________GAACG__UUCG_UUCUUCG\n3'-UUU...ACUUU_____AA____________UGAAU...CAA-5'\n_____________|___________________|\n_____________57__________________38\n |
285 -- 291 |
39 -- 45 |
-16.5835 kcal/mol |
6.01236 kcal/mol |
6.11167 kcal/mol |
274 292@LB@ | |@LB@5'-GCU...CGUAC U UAUGG...UUA-3'@LB@ CUUGU GGGC GGGAAGC@LB@ ||||: ::|| ::|||||@LB@ GAACG UUCG UUCUUCG@LB@3'-UUU...ACUUU AA UGAAU...CAA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -4.46 kcal/mol@LB@Hybridization Energy -16.5835 kcal/mol@LB@Unfolding Energy - mRNA 6.01236 kcal/mol@LB@Unfolding Energy - sRNA 6.11167 kcal/mol@LB@@LB@Position - mRNA 275 -- 291@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 39 -- 45@LB@ |
34 |
0.001265 |
0.1198 |
b0826 |
moeB |
-10.82 |
0.009172 |
276 -- 295 |
26 -- 46 |
molybdopterin synthase sulfurylase |
|
_____________275___________________296\n_____________|_____________________|\n5'-CUU...ACGGC_____________________UCGCG-3'\n______________CAGGAGGCGC_UGAAAGAUUC\n______________||:||:||:|_|:|||:||||\n______________GUUCUUCGUG_AUUUUUUAAG\n3'-UUU...AAUUC__________A__________CAAUG...CAA-5'\n_____________|_____________________|\n_____________47____________________25\n |
289 -- 295 |
26 -- 32 |
-23.0973 kcal/mol |
6.15128 kcal/mol |
6.13041 kcal/mol |
275 296@LB@ | |@LB@5'-CUU...ACGGC UCGCG-3'@LB@ CAGGAGGCGC UGAAAGAUUC@LB@ ||:||:||:| |:|||:||||@LB@ GUUCUUCGUG AUUUUUUAAG@LB@3'-UUU...AAUUC A CAAUG...CAA-5'@LB@ | |@LB@ 47 25@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -23.0973 kcal/mol@LB@Unfolding Energy - mRNA 6.15128 kcal/mol@LB@Unfolding Energy - sRNA 6.13041 kcal/mol@LB@@LB@Position - mRNA 276 -- 295@LB@Position - sRNA 26 -- 46@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 26 -- 32@LB@ |
80 |
0.005376 |
0.2146 |
b1520 |
yneE |
-6.66 |
0.134465 |
278 -- 284 |
34 -- 40 |
bestrophin family putative inner membrane protein |
|
_____________277_____285\n_____________|_______|\n5'-CGU...UCCUC_______CUACU...UCU-3'\n______________GCGCUUA\n______________||:||||\n______________CGUGAAU\n3'-UUU...UUCUU_______UUUUU...CAA-5'\n_____________|_______|\n_____________41______33\n |
278 -- 284 |
34 -- 40 |
-8.65652 kcal/mol |
0.386276 kcal/mol |
1.61352 kcal/mol |
277 285@LB@ | |@LB@5'-CGU...UCCUC CUACU...UCU-3'@LB@ GCGCUUA@LB@ ||:||||@LB@ CGUGAAU@LB@3'-UUU...UUCUU UUUUU...CAA-5'@LB@ | |@LB@ 41 33@LB@@LB@@LB@Energy -6.66 kcal/mol@LB@Hybridization Energy -8.65652 kcal/mol@LB@Unfolding Energy - mRNA 0.386276 kcal/mol@LB@Unfolding Energy - sRNA 1.61352 kcal/mol@LB@@LB@Position - mRNA 278 -- 284@LB@Position - sRNA 34 -- 40@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 34 -- 40@LB@ |
56 |
0.002803 |
0.1597 |
b2514 |
hisS |
-5.93 |
0.201249 |
279 -- 295 |
24 -- 41 |
histidyl tRNA synthetase |
|
_____________278_________________296\n_____________|___________________|\n5'-AUG...UUGAA_____AC____________GCUCG-3'\n______________GGCAC__UGAAAAA__CGU\n______________:||||__|:|||||__|||\n______________UCGUG__AUUUUUU__GCA\n3'-UUU...GUUCU_____A________AA___AUGUG...CAA-5'\n_____________|___________________|\n_____________42__________________23\n |
286 -- 292 |
29 -- 35 |
-10.1195 kcal/mol |
2.54562 kcal/mol |
1.64881 kcal/mol |
278 296@LB@ | |@LB@5'-AUG...UUGAA AC GCUCG-3'@LB@ GGCAC UGAAAAA CGU@LB@ :|||| |:||||| |||@LB@ UCGUG AUUUUUU GCA@LB@3'-UUU...GUUCU A AA AUGUG...CAA-5'@LB@ | |@LB@ 42 23@LB@@LB@@LB@Energy -5.93 kcal/mol@LB@Hybridization Energy -10.1195 kcal/mol@LB@Unfolding Energy - mRNA 2.54562 kcal/mol@LB@Unfolding Energy - sRNA 1.64881 kcal/mol@LB@@LB@Position - mRNA 279 -- 295@LB@Position - sRNA 24 -- 41@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 29 -- 35@LB@ |
12 |
0.0001753 |
0.04706 |
b3676 |
yidH |
-12.46 |
0.002725 |
279 -- 300 |
7 -- 26 |
DUF202 family inner membrane protein |
|
_____________278___________________300\n_____________|_____________________|\n5'-GCC...GGAUC___AC__________UU_____-3'\n______________CGU__UGCACUAGGA__UCUGG\n______________|||__|:|||:||||__||||:\n______________GCA__AUGUGGUCCU__AGACU\n3'-UUU...UUUAA_______________UU_____ACACAA-5'\n_____________|______________________|\n_____________27_____________________6\n |
286 -- 292 |
15 -- 21 |
-23.8048 kcal/mol |
2.98352 kcal/mol |
8.36616 kcal/mol |
278 300@LB@ | |@LB@5'-GCC...GGAUC AC UU -3'@LB@ CGU UGCACUAGGA UCUGG@LB@ ||| |:|||:|||| ||||:@LB@ GCA AUGUGGUCCU AGACU@LB@3'-UUU...UUUAA UU ACACAA-5'@LB@ | |@LB@ 27 6@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -23.8048 kcal/mol@LB@Unfolding Energy - mRNA 2.98352 kcal/mol@LB@Unfolding Energy - sRNA 8.36616 kcal/mol@LB@@LB@Position - mRNA 279 -- 300@LB@Position - sRNA 7 -- 26@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 15 -- 21@LB@ |
15 |
0.0003116 |
0.06692 |
b2149 |
mglA |
-7.01 |
0.109495 |
281 -- 289 |
33 -- 41 |
methyl-galactoside ABC transporter ATPase |
|
_____________280_______290\n_____________|_________|\n5'-CGA...GUUAA_________UAACG...AUU-3'\n______________GGCACUUGA\n______________:||||||:|\n______________UCGUGAAUU\n3'-UUU...GUUCU_________UUUUA...CAA-5'\n_____________|_________|\n_____________42________32\n |
283 -- 289 |
33 -- 39 |
-11.227 kcal/mol |
2.59529 kcal/mol |
1.6188 kcal/mol |
280 290@LB@ | |@LB@5'-CGA...GUUAA UAACG...AUU-3'@LB@ GGCACUUGA@LB@ :||||||:|@LB@ UCGUGAAUU@LB@3'-UUU...GUUCU UUUUA...CAA-5'@LB@ | |@LB@ 42 32@LB@@LB@@LB@Energy -7.01 kcal/mol@LB@Hybridization Energy -11.227 kcal/mol@LB@Unfolding Energy - mRNA 2.59529 kcal/mol@LB@Unfolding Energy - sRNA 1.6188 kcal/mol@LB@@LB@Position - mRNA 281 -- 289@LB@Position - sRNA 33 -- 41@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 33 -- 39@LB@ |
179 |
0.02107 |
0.3768 |
b3226 |
nanR |
-7.22 |
0.096643 |
281 -- 296 |
26 -- 41 |
sialic acid-inducible nan operon repressor |
|
_____________280______________297\n_____________|________________|\n5'-AUU...CCGCU_____G_______C__UCCG-3'\n______________GGCGC_UAAAAAA_UC\n______________:||:|_|||||||_||\n______________UCGUG_AUUUUUU_AG\n3'-UUU...GUUCU_____A_______A__CAAUG...CAA-5'\n_____________|________________|\n_____________42_______________25\n |
287 -- 293 |
29 -- 35 |
-11.6683 kcal/mol |
2.7952 kcal/mol |
1.64829 kcal/mol |
280 297@LB@ | |@LB@5'-AUU...CCGCU G C UCCG-3'@LB@ GGCGC UAAAAAA UC@LB@ :||:| ||||||| ||@LB@ UCGUG AUUUUUU AG@LB@3'-UUU...GUUCU A A CAAUG...CAA-5'@LB@ | |@LB@ 42 25@LB@@LB@@LB@Energy -7.22 kcal/mol@LB@Hybridization Energy -11.6683 kcal/mol@LB@Unfolding Energy - mRNA 2.7952 kcal/mol@LB@Unfolding Energy - sRNA 1.64829 kcal/mol@LB@@LB@Position - mRNA 281 -- 296@LB@Position - sRNA 26 -- 41@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 29 -- 35@LB@ |
66 |
0.003432 |
0.1645 |
b0882 |
clpA |
-7.45 |
0.084488 |
282 -- 290 |
34 -- 42 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________281_______291\n_____________|_________|\n5'-UUU...CCGUC_________UUACU...CGC-3'\n______________GAGCACUUG\n______________:|||||||:\n______________UUCGUGAAU\n3'-UUU...CGUUC_________UUUUU...CAA-5'\n_____________|_________|\n_____________43________33\n |
284 -- 290 |
34 -- 40 |
-10.5586 kcal/mol |
1.49281 kcal/mol |
1.61613 kcal/mol |
281 291@LB@ | |@LB@5'-UUU...CCGUC UUACU...CGC-3'@LB@ GAGCACUUG@LB@ :|||||||:@LB@ UUCGUGAAU@LB@3'-UUU...CGUUC UUUUU...CAA-5'@LB@ | |@LB@ 43 33@LB@@LB@@LB@Energy -7.45 kcal/mol@LB@Hybridization Energy -10.5586 kcal/mol@LB@Unfolding Energy - mRNA 1.49281 kcal/mol@LB@Unfolding Energy - sRNA 1.61613 kcal/mol@LB@@LB@Position - mRNA 282 -- 290@LB@Position - sRNA 34 -- 42@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 34 -- 40@LB@ |
96 |
0.007122 |
0.239 |
b2060 |
wzc |
-5.51 |
0.249431 |
285 -- 291 |
37 -- 43 |
colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase |
|
_____________284_____292\n_____________|_______|\n5'-GAA...UCAUU_______GCUGG...GGG-3'\n______________GAAGCGC\n______________|||||:|\n______________CUUCGUG\n3'-UUU...UCGUU_______AAUUU...CAA-5'\n_____________|_______|\n_____________44______36\n |
285 -- 291 |
37 -- 43 |
-9.9751 kcal/mol |
0.803081 kcal/mol |
3.6595 kcal/mol |
284 292@LB@ | |@LB@5'-GAA...UCAUU GCUGG...GGG-3'@LB@ GAAGCGC@LB@ |||||:|@LB@ CUUCGUG@LB@3'-UUU...UCGUU AAUUU...CAA-5'@LB@ | |@LB@ 44 36@LB@@LB@@LB@Energy -5.51 kcal/mol@LB@Hybridization Energy -9.9751 kcal/mol@LB@Unfolding Energy - mRNA 0.803081 kcal/mol@LB@Unfolding Energy - sRNA 3.6595 kcal/mol@LB@@LB@Position - mRNA 285 -- 291@LB@Position - sRNA 37 -- 43@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 37 -- 43@LB@ |
183 |
0.02165 |
0.3768 |
b4201 |
priB |
-4.41 |
0.419305 |
289 -- 298 |
45 -- 54 |
primosomal protein N |
|
_____________288________299\n_____________|__________|\n5'-AGG...GUUCG__________UC-3'\n______________UGCUUGAGCA\n______________|||||:||||\n______________ACGAAUUCGU\n3'-UUU...UUUGA__________UCUUC...CAA-5'\n_____________|__________|\n_____________55_________44\n |
290 -- 296 |
47 -- 53 |
-14.7774 kcal/mol |
4.46723 kcal/mol |
5.90361 kcal/mol |
288 299@LB@ | |@LB@5'-AGG...GUUCG UC-3'@LB@ UGCUUGAGCA@LB@ |||||:||||@LB@ ACGAAUUCGU@LB@3'-UUU...UUUGA UCUUC...CAA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -4.41 kcal/mol@LB@Hybridization Energy -14.7774 kcal/mol@LB@Unfolding Energy - mRNA 4.46723 kcal/mol@LB@Unfolding Energy - sRNA 5.90361 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 47 -- 53@LB@ |