144 |
0.01453 |
0.3231 |
b3614 |
yibQ |
-4.49 |
0.404320 |
261 -- 267 |
34 -- 40 |
putative polysaccharide deacetylase |
|
_____________260_____268\n_____________|_______|\n5'-UGG...CCCCC_______CUGGC...UUG-3'\n______________GUACUUG\n______________|:||||:\n______________CGUGAAU\n3'-UUU...UUCUU_______UUUUU...CAA-5'\n_____________|_______|\n_____________41______33\n |
261 -- 267 |
34 -- 40 |
-7.10274 kcal/mol |
0.998159 kcal/mol |
1.61352 kcal/mol |
260 268@LB@ | |@LB@5'-UGG...CCCCC CUGGC...UUG-3'@LB@ GUACUUG@LB@ |:||||:@LB@ CGUGAAU@LB@3'-UUU...UUCUU UUUUU...CAA-5'@LB@ | |@LB@ 41 33@LB@@LB@@LB@Energy -4.49 kcal/mol@LB@Hybridization Energy -7.10274 kcal/mol@LB@Unfolding Energy - mRNA 0.998159 kcal/mol@LB@Unfolding Energy - sRNA 1.61352 kcal/mol@LB@@LB@Position - mRNA 261 -- 267@LB@Position - sRNA 34 -- 40@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 34 -- 40@LB@ |
135 |
0.01294 |
0.3087 |
b3785 |
wzzE |
-4.46 |
0.409883 |
275 -- 291 |
39 -- 56 |
Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
|
_____________274_________________292\n_____________|___________________|\n5'-GCU...CGUAC___________U_______UAUGG...UUA-3'\n______________CUUGU__GGGC_GGGAAGC\n______________||||:__::||_::|||||\n______________GAACG__UUCG_UUCUUCG\n3'-UUU...ACUUU_____AA____________UGAAU...CAA-5'\n_____________|___________________|\n_____________57__________________38\n |
285 -- 291 |
39 -- 45 |
-16.5835 kcal/mol |
6.01236 kcal/mol |
6.11167 kcal/mol |
274 292@LB@ | |@LB@5'-GCU...CGUAC U UAUGG...UUA-3'@LB@ CUUGU GGGC GGGAAGC@LB@ ||||: ::|| ::|||||@LB@ GAACG UUCG UUCUUCG@LB@3'-UUU...ACUUU AA UGAAU...CAA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -4.46 kcal/mol@LB@Hybridization Energy -16.5835 kcal/mol@LB@Unfolding Energy - mRNA 6.01236 kcal/mol@LB@Unfolding Energy - sRNA 6.11167 kcal/mol@LB@@LB@Position - mRNA 275 -- 291@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 39 -- 45@LB@ |
183 |
0.02165 |
0.3768 |
b4201 |
priB |
-4.41 |
0.419305 |
289 -- 298 |
45 -- 54 |
primosomal protein N |
|
_____________288________299\n_____________|__________|\n5'-AGG...GUUCG__________UC-3'\n______________UGCUUGAGCA\n______________|||||:||||\n______________ACGAAUUCGU\n3'-UUU...UUUGA__________UCUUC...CAA-5'\n_____________|__________|\n_____________55_________44\n |
290 -- 296 |
47 -- 53 |
-14.7774 kcal/mol |
4.46723 kcal/mol |
5.90361 kcal/mol |
288 299@LB@ | |@LB@5'-AGG...GUUCG UC-3'@LB@ UGCUUGAGCA@LB@ |||||:||||@LB@ ACGAAUUCGU@LB@3'-UUU...UUUGA UCUUC...CAA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -4.41 kcal/mol@LB@Hybridization Energy -14.7774 kcal/mol@LB@Unfolding Energy - mRNA 4.46723 kcal/mol@LB@Unfolding Energy - sRNA 5.90361 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 47 -- 53@LB@ |
65 |
0.003382 |
0.1645 |
b1739 |
osmE |
-4.35 |
0.428849 |
173 -- 228 |
7 -- 58 |
osmotically-inducible lipoprotein |
|
_____________172______________________________________________________229\n_____________|________________________________________________________|\n5'-GAA...UAUCU___AC___GA___A_______A__GAAUAUGAACAAGAA____G______U_____GUGCA...AGC-3'\n______________AAC__GCU__UAA_CAAGAGG_CG_______________UAUG_CAGGAA_UCUGA\n______________|||__|||__|||_|||||:|_|:_______________||::_||||||_|||||\n______________UUG__CGA__AUU_GUUCUUC_GU_______________AUGU_GUCCUU_AGACU\n3'-UUU...CUACU___AA________C__________GAAUUUUUUAAGCA_____G______U_____ACACAA-5'\n_____________|________________________________________________________|\n_____________59_______________________________________________________6\n |
187 -- 193 |
40 -- 46 |
-28.7812 kcal/mol |
10.5809 kcal/mol |
13.8467 kcal/mol |
172 229@LB@ | |@LB@5'-GAA...UAUCU AC GA A A GAAUAUGAACAAGAA G U GUGCA...AGC-3'@LB@ AAC GCU UAA CAAGAGG CG UAUG CAGGAA UCUGA@LB@ ||| ||| ||| |||||:| |: ||:: |||||| |||||@LB@ UUG CGA AUU GUUCUUC GU AUGU GUCCUU AGACU@LB@3'-UUU...CUACU AA C GAAUUUUUUAAGCA G U ACACAA-5'@LB@ | |@LB@ 59 6@LB@@LB@@LB@Energy -4.35 kcal/mol@LB@Hybridization Energy -28.7812 kcal/mol@LB@Unfolding Energy - mRNA 10.5809 kcal/mol@LB@Unfolding Energy - sRNA 13.8467 kcal/mol@LB@@LB@Position - mRNA 173 -- 228@LB@Position - sRNA 7 -- 58@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 40 -- 46@LB@ |
138 |
0.01322 |
0.3087 |
b1523 |
yneG |
-4.22 |
0.452951 |
267 -- 281 |
24 -- 41 |
DUF4186 family protein |
|
_____________266________________282\n_____________|__________________|\n5'-AUG...GUCUG_____________G____CAGUA...AAG-3'\n______________GGCA__UGAAAGA__CGU\n______________:|||__|:|||:|__|||\n______________UCGU__AUUUUUU__GCA\n3'-UUU...GUUCU____GA_______AA___AUGUG...CAA-5'\n_____________|__________________|\n_____________42_________________23\n |
271 -- 277 |
29 -- 35 |
-8.58312 kcal/mol |
2.71204 kcal/mol |
1.64881 kcal/mol |
266 282@LB@ | |@LB@5'-AUG...GUCUG G CAGUA...AAG-3'@LB@ GGCA UGAAAGA CGU@LB@ :||| |:|||:| |||@LB@ UCGU AUUUUUU GCA@LB@3'-UUU...GUUCU GA AA AUGUG...CAA-5'@LB@ | |@LB@ 42 23@LB@@LB@@LB@Energy -4.22 kcal/mol@LB@Hybridization Energy -8.58312 kcal/mol@LB@Unfolding Energy - mRNA 2.71204 kcal/mol@LB@Unfolding Energy - sRNA 1.64881 kcal/mol@LB@@LB@Position - mRNA 267 -- 281@LB@Position - sRNA 24 -- 41@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 29 -- 35@LB@ |
99 |
0.007347 |
0.239 |
b4348 |
hsdS |
-4.18 |
0.460078 |
133 -- 139 |
70 -- 76 |
specificity determinant for hsdM and hsdR |
|
_____________132_____140\n_____________|_______|\n5'-CUG...GUGAA_______CGAGC...UAA-3'\n______________CUGGGGG\n______________|||:|||\n______________GACUCCC\n3'-UUU...GCUGG_______CCAGC...CAA-5'\n_____________|_______|\n_____________77______69\n |
133 -- 139 |
70 -- 76 |
-10.3039 kcal/mol |
2.51492 kcal/mol |
3.60488 kcal/mol |
132 140@LB@ | |@LB@5'-CUG...GUGAA CGAGC...UAA-3'@LB@ CUGGGGG@LB@ |||:|||@LB@ GACUCCC@LB@3'-UUU...GCUGG CCAGC...CAA-5'@LB@ | |@LB@ 77 69@LB@@LB@@LB@Energy -4.18 kcal/mol@LB@Hybridization Energy -10.3039 kcal/mol@LB@Unfolding Energy - mRNA 2.51492 kcal/mol@LB@Unfolding Energy - sRNA 3.60488 kcal/mol@LB@@LB@Position - mRNA 133 -- 139@LB@Position - sRNA 70 -- 76@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 70 -- 76@LB@ |
153 |
0.016 |
0.3359 |
b2167 |
fruA |
-4.10 |
0.476180 |
191 -- 199 |
37 -- 45 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________190_______200\n_____________|_________|\n5'-CGC...AGCAG_________AAUGA...AAA-3'\n______________GAGAGGCAU\n______________:|||:|||:\n______________UUCUUCGUG\n3'-UUU...AUUCG_________AAUUU...CAA-5'\n_____________|_________|\n_____________46________36\n |
193 -- 199 |
37 -- 43 |
-10.9543 kcal/mol |
1.97714 kcal/mol |
4.8783 kcal/mol |
190 200@LB@ | |@LB@5'-CGC...AGCAG AAUGA...AAA-3'@LB@ GAGAGGCAU@LB@ :|||:|||:@LB@ UUCUUCGUG@LB@3'-UUU...AUUCG AAUUU...CAA-5'@LB@ | |@LB@ 46 36@LB@@LB@@LB@Energy -4.10 kcal/mol@LB@Hybridization Energy -10.9543 kcal/mol@LB@Unfolding Energy - mRNA 1.97714 kcal/mol@LB@Unfolding Energy - sRNA 4.8783 kcal/mol@LB@@LB@Position - mRNA 191 -- 199@LB@Position - sRNA 37 -- 45@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 37 -- 43@LB@ |
87 |
0.005861 |
0.217 |
b3083 |
higB |
-4.01 |
0.492619 |
220 -- 233 |
28 -- 42 |
mRNA interferase toxin of the HigB-HigA toxin-antitoxin system |
|
_____________219_____________234\n_____________|_______________|\n5'-GCA...UCAAA_______________GCUGC...GAU-3'\n______________AAGCAUU_GAAAGAU\n______________|||||:|_:|||:||\n______________UUCGUGA_UUUUUUA\n3'-UUU...CGUUC_______A_______AGCAA...CAA-5'\n_____________|_______________|\n_____________43______________27\n |
220 -- 226 |
36 -- 42 |
-9.16043 kcal/mol |
3.51035 kcal/mol |
1.63711 kcal/mol |
219 234@LB@ | |@LB@5'-GCA...UCAAA GCUGC...GAU-3'@LB@ AAGCAUU GAAAGAU@LB@ |||||:| :|||:||@LB@ UUCGUGA UUUUUUA@LB@3'-UUU...CGUUC A AGCAA...CAA-5'@LB@ | |@LB@ 43 27@LB@@LB@@LB@Energy -4.01 kcal/mol@LB@Hybridization Energy -9.16043 kcal/mol@LB@Unfolding Energy - mRNA 3.51035 kcal/mol@LB@Unfolding Energy - sRNA 1.63711 kcal/mol@LB@@LB@Position - mRNA 220 -- 233@LB@Position - sRNA 28 -- 42@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 36 -- 42@LB@ |
140 |
0.01344 |
0.3093 |
b0426 |
yajQ |
-3.92 |
0.510019 |
240 -- 246 |
37 -- 43 |
phage Phi6 host factor ATP/GTP binding protein |
|
_____________239_____247\n_____________|_______|\n5'-UAA...UUCAG_______GUAAC...GUA-3'\n______________GAAGCAC\n______________|||||||\n______________CUUCGUG\n3'-UUU...UCGUU_______AAUUU...CAA-5'\n_____________|_______|\n_____________44______36\n |
240 -- 246 |
37 -- 43 |
-10.1802 kcal/mol |
2.59742 kcal/mol |
3.6595 kcal/mol |
239 247@LB@ | |@LB@5'-UAA...UUCAG GUAAC...GUA-3'@LB@ GAAGCAC@LB@ |||||||@LB@ CUUCGUG@LB@3'-UUU...UCGUU AAUUU...CAA-5'@LB@ | |@LB@ 44 36@LB@@LB@@LB@Energy -3.92 kcal/mol@LB@Hybridization Energy -10.1802 kcal/mol@LB@Unfolding Energy - mRNA 2.59742 kcal/mol@LB@Unfolding Energy - sRNA 3.6595 kcal/mol@LB@@LB@Position - mRNA 240 -- 246@LB@Position - sRNA 37 -- 43@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 37 -- 43@LB@ |
152 |
0.01589 |
0.3359 |
b3428 |
glgP |
-3.42 |
0.610648 |
252 -- 258 |
36 -- 42 |
glycogen phosphorylase |
|
_____________251_____259\n_____________|_______|\n5'-CCA...CUCUU_______CUAUC...CGG-3'\n______________AAGCACU\n______________|||||||\n______________UUCGUGA\n3'-UUU...CGUUC_______AUUUU...CAA-5'\n_____________|_______|\n_____________43______35\n |
252 -- 258 |
36 -- 42 |
-8.34293 kcal/mol |
3.32239 kcal/mol |
1.60154 kcal/mol |
251 259@LB@ | |@LB@5'-CCA...CUCUU CUAUC...CGG-3'@LB@ AAGCACU@LB@ |||||||@LB@ UUCGUGA@LB@3'-UUU...CGUUC AUUUU...CAA-5'@LB@ | |@LB@ 43 35@LB@@LB@@LB@Energy -3.42 kcal/mol@LB@Hybridization Energy -8.34293 kcal/mol@LB@Unfolding Energy - mRNA 3.32239 kcal/mol@LB@Unfolding Energy - sRNA 1.60154 kcal/mol@LB@@LB@Position - mRNA 252 -- 258@LB@Position - sRNA 36 -- 42@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 36 -- 42@LB@ |