| 191 |
0.0243 |
0.4226 |
b4511 |
ybdZ |
-10.65 |
0.148355 |
2 -- 30 |
16 -- 45 |
stimulator of EntF adenylation activity MbtH-like |
|
_____________1_________________________________31\n_____________|_________________________________|\n__________5'-C_____________GGAAG_____A_________CCGAU...UAC-3'\n______________GCA___UUGUGCU_____CGGGU__UUCGCGAG\n______________|||___|:|||||_____|:|||__|:||||||\n______________CGU___AGCACGA_____GUCCA__AGGCGCUC\n3'-UUU...ACACU___UAC_______AA________AG________CCAGA...GCG-5'\n_____________|_________________________________|\n_____________46________________________________15\n |
24 -- 30 |
16 -- 22 |
-30.8687 kcal/mol |
10.0459 kcal/mol |
10.1709 kcal/mol |
1 31@LB@ | |@LB@ 5'-C GGAAG A CCGAU...UAC-3'@LB@ GCA UUGUGCU CGGGU UUCGCGAG@LB@ ||| |:||||| |:||| |:||||||@LB@ CGU AGCACGA GUCCA AGGCGCUC@LB@3'-UUU...ACACU UAC AA AG CCAGA...GCG-5'@LB@ | |@LB@ 46 15@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -30.8687 kcal/mol@LB@Unfolding Energy - mRNA 10.0459 kcal/mol@LB@Unfolding Energy - sRNA 10.1709 kcal/mol@LB@@LB@Position - mRNA 2 -- 30@LB@Position - sRNA 16 -- 45@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 192 |
0.02457 |
0.4226 |
b2689 |
yqaA |
-16.30 |
0.016522 |
258 -- 300 |
44 -- 85 |
COG1238 family inner membrane protein |
|
_____________257_________________________________________300\n_____________|___________________________________________|\n5'-CAC...CUACA___U________AACUCCG____C_______U________U___-3'\n______________CUA_UACCCGGC_______AAGU_GUGCUGG_GGCAAUGU__GC\n______________|:|_:|||||||_______||||_:|:||||_:|||||||__||\n______________GGU_GUGGGCCG_______UUCA_UAUGACC_UCGUUACA__CG\n______3'-UUUUC___C________ACCGA______U_______U________CU__UUACA...GCG-5'\n_____________|____________________________________________|\n_____________86___________________________________________43\n |
291 -- 297 |
48 -- 54 |
-43.3701 kcal/mol |
12.1561 kcal/mol |
14.9093 kcal/mol |
257 300@LB@ | |@LB@5'-CAC...CUACA U AACUCCG C U U -3'@LB@ CUA UACCCGGC AAGU GUGCUGG GGCAAUGU GC@LB@ |:| :||||||| |||| :|:|||| :||||||| ||@LB@ GGU GUGGGCCG UUCA UAUGACC UCGUUACA CG@LB@ 3'-UUUUC C ACCGA U U CU UUACA...GCG-5'@LB@ | |@LB@ 86 43@LB@@LB@@LB@Energy -16.30 kcal/mol@LB@Hybridization Energy -43.3701 kcal/mol@LB@Unfolding Energy - mRNA 12.1561 kcal/mol@LB@Unfolding Energy - sRNA 14.9093 kcal/mol@LB@@LB@Position - mRNA 258 -- 300@LB@Position - sRNA 44 -- 85@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 193 |
0.02468 |
0.4226 |
b0642 |
leuS |
-10.30 |
0.169116 |
191 -- 213 |
41 -- 61 |
leucyl-tRNA synthetase |
|
_____________190_____________________214\n_____________|_______________________|\n5'-AAU...GGACC_____CU__C___CAA_______ACCGC...AGA-3'\n______________ACUGG__GC_AUG___GAGCAAU\n______________|||||__||_|||___|||||||\n______________UGACC__CG_UAC___CUCGUUA\n3'-UUU...CAUUA_____UU__U___A_________CAGCA...GCG-5'\n_____________|_______________________|\n_____________62______________________40\n |
207 -- 213 |
41 -- 47 |
-20.8037 kcal/mol |
7.20782 kcal/mol |
3.30062 kcal/mol |
190 214@LB@ | |@LB@5'-AAU...GGACC CU C CAA ACCGC...AGA-3'@LB@ ACUGG GC AUG GAGCAAU@LB@ ||||| || ||| |||||||@LB@ UGACC CG UAC CUCGUUA@LB@3'-UUU...CAUUA UU U A CAGCA...GCG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -20.8037 kcal/mol@LB@Unfolding Energy - mRNA 7.20782 kcal/mol@LB@Unfolding Energy - sRNA 3.30062 kcal/mol@LB@@LB@Position - mRNA 191 -- 213@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 194 |
0.02479 |
0.4226 |
b1260 |
trpA |
-8.29 |
0.338830 |
290 -- 297 |
41 -- 48 |
tryptophan synthase alpha subunit |
|
_____________289______298\n_____________|________|\n5'-GCC...GGCAU________CAU-3'\n______________UGAGCAGU\n______________||||||:|\n______________ACUCGUUA\n3'-UUU...GUUAC________CAGCA...GCG-5'\n_____________|________|\n_____________49_______40\n |
291 -- 297 |
41 -- 47 |
-10.1831 kcal/mol |
0.772851 kcal/mol |
1.11967 kcal/mol |
289 298@LB@ | |@LB@5'-GCC...GGCAU CAU-3'@LB@ UGAGCAGU@LB@ ||||||:|@LB@ ACUCGUUA@LB@3'-UUU...GUUAC CAGCA...GCG-5'@LB@ | |@LB@ 49 40@LB@@LB@@LB@Energy -8.29 kcal/mol@LB@Hybridization Energy -10.1831 kcal/mol@LB@Unfolding Energy - mRNA 0.772851 kcal/mol@LB@Unfolding Energy - sRNA 1.11967 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 41 -- 48@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 195 |
0.0249 |
0.4226 |
b1476 |
fdnI |
-9.91 |
0.194140 |
190 -- 212 |
37 -- 58 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________189______________________213\n_____________|________________________|\n5'-CGU...GACGA_____AU__UCA____________AAAAU...UUU-3'\n______________GGAGG__CA___UGAGUAA_GUCG\n______________|||:|__||___||||:||_||||\n______________CCUUC__GU___ACUCGUU_CAGC\n3'-UUU...UAUGA_________UAC_______A____ACGAA...GCG-5'\n_____________|________________________|\n_____________59_______________________36\n |
202 -- 208 |
42 -- 48 |
-19.5397 kcal/mol |
6.39857 kcal/mol |
3.22699 kcal/mol |
189 213@LB@ | |@LB@5'-CGU...GACGA AU UCA AAAAU...UUU-3'@LB@ GGAGG CA UGAGUAA GUCG@LB@ |||:| || ||||:|| ||||@LB@ CCUUC GU ACUCGUU CAGC@LB@3'-UUU...UAUGA UAC A ACGAA...GCG-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -19.5397 kcal/mol@LB@Unfolding Energy - mRNA 6.39857 kcal/mol@LB@Unfolding Energy - sRNA 3.22699 kcal/mol@LB@@LB@Position - mRNA 190 -- 212@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 196 |
0.02499 |
0.4226 |
b3098 |
yqjD |
-9.33 |
0.238834 |
67 -- 86 |
37 -- 57 |
membrane-anchored ribosome-binding protein |
|
_____________66____________________87\n_____________|_____________________|\n5'-UCA...GAGGC_______AAA________C__AUAAG...AAG-3'\n______________GAAGCAA____GGCGAUG_CG\n______________|||||||____:||:|||_||\n______________CUUCGUU____UCGUUAC_GC\n3'-UUU...AUGAC_______ACAC_______A__ACGAA...GCG-5'\n_____________|_____________________|\n_____________58____________________36\n |
77 -- 83 |
40 -- 46 |
-18.4137 kcal/mol |
5.85817 kcal/mol |
3.2267 kcal/mol |
66 87@LB@ | |@LB@5'-UCA...GAGGC AAA C AUAAG...AAG-3'@LB@ GAAGCAA GGCGAUG CG@LB@ ||||||| :||:||| ||@LB@ CUUCGUU UCGUUAC GC@LB@3'-UUU...AUGAC ACAC A ACGAA...GCG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -18.4137 kcal/mol@LB@Unfolding Energy - mRNA 5.85817 kcal/mol@LB@Unfolding Energy - sRNA 3.2267 kcal/mol@LB@@LB@Position - mRNA 67 -- 86@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 197 |
0.02501 |
0.4226 |
b2947 |
gshB |
-10.62 |
0.150229 |
274 -- 293 |
36 -- 62 |
glutathione synthetase |
|
_____________273_________________________294\n_____________|___________________________|\n5'-UGC...UAUGU_____________________C_____GGUUACG-3'\n______________UGCUGGAAGCA_______CAG_GUCGU\n______________|:|||||||||_______||:_|||||\n______________AUGACCUUCGU_______GUU_CAGCA\n3'-UUU...UCAUU___________UACACUC___A_____CGAAA...GCG-5'\n_____________|___________________________|\n_____________63__________________________35\n |
278 -- 284 |
52 -- 58 |
-23.3786 kcal/mol |
9.45801 kcal/mol |
3.30265 kcal/mol |
273 294@LB@ | |@LB@5'-UGC...UAUGU C GGUUACG-3'@LB@ UGCUGGAAGCA CAG GUCGU@LB@ |:||||||||| ||: |||||@LB@ AUGACCUUCGU GUU CAGCA@LB@3'-UUU...UCAUU UACACUC A CGAAA...GCG-5'@LB@ | |@LB@ 63 35@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -23.3786 kcal/mol@LB@Unfolding Energy - mRNA 9.45801 kcal/mol@LB@Unfolding Energy - sRNA 3.30265 kcal/mol@LB@@LB@Position - mRNA 274 -- 293@LB@Position - sRNA 36 -- 62@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 198 |
0.02503 |
0.4226 |
b2544 |
yphB |
-11.73 |
0.099011 |
68 -- 80 |
47 -- 61 |
mutarotase superfamily protein YphB family |
|
_____________67______________81\n_____________|_______________|\n5'-CGG...GACGG_______________GCCGC...UAC-3'\n______________ACUGGAAGC__UGUG\n______________|||||||||__||||\n______________UGACCUUCG__ACAC\n3'-UUU...CAUUA_________UU____UCGUU...GCG-5'\n_____________|_______________|\n_____________62______________46\n |
70 -- 76 |
53 -- 59 |
-17.6322 kcal/mol |
2.81046 kcal/mol |
3.09217 kcal/mol |
67 81@LB@ | |@LB@5'-CGG...GACGG GCCGC...UAC-3'@LB@ ACUGGAAGC UGUG@LB@ ||||||||| ||||@LB@ UGACCUUCG ACAC@LB@3'-UUU...CAUUA UU UCGUU...GCG-5'@LB@ | |@LB@ 62 46@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -17.6322 kcal/mol@LB@Unfolding Energy - mRNA 2.81046 kcal/mol@LB@Unfolding Energy - sRNA 3.09217 kcal/mol@LB@@LB@Position - mRNA 68 -- 80@LB@Position - sRNA 47 -- 61@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 199 |
0.02505 |
0.4226 |
b3794 |
wecG |
-14.56 |
0.032964 |
62 -- 86 |
1 -- 25 |
UDP-N-acetyl-D-mannosaminuronic acid transferase |
|
_____________61_________________________87\n_____________|__________________________|\n5'-UUC...GUUUG____A____U__________U_____GGUCU...ACG-3'\n______________UCUC_CGCG__GGUCUUUUU_AUCGU\n______________||||_||||__||||||::|_||||:\n______________AGAG_GCGC__CCAGAAGGA_UAGCG\n3'-UUU...GUCCA_________UC_________C_____-5'\n_____________|_________________________|\n_____________26________________________1\n |
74 -- 80 |
7 -- 13 |
-28.4933 kcal/mol |
6.21356 kcal/mol |
7.71912 kcal/mol |
61 87@LB@ | |@LB@5'-UUC...GUUUG A U U GGUCU...ACG-3'@LB@ UCUC CGCG GGUCUUUUU AUCGU@LB@ |||| |||| ||||||::| ||||:@LB@ AGAG GCGC CCAGAAGGA UAGCG@LB@3'-UUU...GUCCA UC C -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -28.4933 kcal/mol@LB@Unfolding Energy - mRNA 6.21356 kcal/mol@LB@Unfolding Energy - sRNA 7.71912 kcal/mol@LB@@LB@Position - mRNA 62 -- 86@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 200 |
0.02516 |
0.4226 |
b2566 |
era |
-10.17 |
0.177109 |
195 -- 210 |
37 -- 61 |
membrane-associated 16S rRNA-binding GTPase |
|
_____________194_______________________211\n_____________|_________________________|\n5'-UUG...CUGGA_________________________AUAAA...UCU-3'\n______________GCUGGAA______UGAGCA___UCG\n______________:||||||______||||||___|||\n______________UGACCUU______ACUCGU___AGC\n3'-UUU...CAUUA_______CGUUAC______UAC___ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
195 -- 201 |
55 -- 61 |
-17.979 kcal/mol |
4.50899 kcal/mol |
3.30158 kcal/mol |
194 211@LB@ | |@LB@5'-UUG...CUGGA AUAAA...UCU-3'@LB@ GCUGGAA UGAGCA UCG@LB@ :|||||| |||||| |||@LB@ UGACCUU ACUCGU AGC@LB@3'-UUU...CAUUA CGUUAC UAC ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -17.979 kcal/mol@LB@Unfolding Energy - mRNA 4.50899 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 195 -- 210@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 55 -- 61@LB@ |
