186 |
0.02152 |
0.3833 |
b3581 |
sgbH |
-10.17 |
0.255482 |
135 -- 158 |
123 -- 153 |
3-keto-L-gulonate 6-phosphate decarboxylase |
|
_____________134________159\n_____________|__________|\n5'-UUU...UAAGG__________UAUGA...AAG-3'\n______________AG_CACACAU\n______________||_|||||||\n______________UC_GUGUGUA\n3'-UUU...AUGAG__A_______CUACG...UAG-5'\n_____________|__________|\n_____________154________122\n |
193 -- 199 |
166 -- 172 |
-9.15702 kcal/mol |
1.98532 kcal/mol |
0.591348 kcal/mol |
134 159@LB@ | |@LB@5'-UUU...UAAGG UAUGA...AAG-3'@LB@ AG CACACAU@LB@ || |||||||@LB@ UC GUGUGUA@LB@3'-UUU...AUGAG A CUACG...UAG-5'@LB@ | |@LB@ 154 122@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -9.15702 kcal/mol@LB@Unfolding Energy - mRNA 1.98532 kcal/mol@LB@Unfolding Energy - sRNA 0.591348 kcal/mol@LB@@LB@Position - mRNA 135 -- 158@LB@Position - sRNA 123 -- 153@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 166 -- 172@LB@ |
183 |
0.02111 |
0.3833 |
b0461 |
tomB |
-12.41 |
0.091700 |
125 -- 158 |
128 -- 160 |
Hha toxicity attenuator; conjugation-related protein |
|
_____________124_________________________________________159\n_____________|___________________________________________|\n5'-UGC...GGAUG________CCCAAA_G_______AUC____C__C____G____UCUGU...AUC-3'\n______________AAUACUCA______A_ACAUGAU____GCA_AG_UUAA_UUUC\n______________||||||||______|_|||||||____|||_||_|:||_||||\n______________UUAUGAGU______U_UGUACUA____CGU_UC_AGUU_AAAG\n3'-UUU...UGUGG________CAG____G_______CGUC___________G____UCUUA...UAG-5'\n_____________|___________________________________________|\n_____________161_________________________________________127\n |
224 -- 230 |
163 -- 169 |
-23.2008 kcal/mol |
3.84731 kcal/mol |
8.26055 kcal/mol |
124 159@LB@ | |@LB@5'-UGC...GGAUG CCCAAA G AUC C C G UCUGU...AUC-3'@LB@ AAUACUCA A ACAUGAU GCA AG UUAA UUUC@LB@ |||||||| | ||||||| ||| || |:|| ||||@LB@ UUAUGAGU U UGUACUA CGU UC AGUU AAAG@LB@3'-UUU...UGUGG CAG G CGUC G UCUUA...UAG-5'@LB@ | |@LB@ 161 127@LB@@LB@@LB@Energy -12.41 kcal/mol@LB@Hybridization Energy -23.2008 kcal/mol@LB@Unfolding Energy - mRNA 3.84731 kcal/mol@LB@Unfolding Energy - sRNA 8.26055 kcal/mol@LB@@LB@Position - mRNA 125 -- 158@LB@Position - sRNA 128 -- 160@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 163 -- 169@LB@ |
198 |
0.0236 |
0.3833 |
b1110 |
ycfJ |
-10.00 |
0.275196 |
69 -- 84 |
142 -- 161 |
uncharacterized protein |
|
_____________68__________________85\n_____________|___________________|\n5'-ACU...CCAGC_______GC___UU_____UUCUG...AAU-3'\n______________CAUUCCC__GCU__UCAUC\n______________||::|||__|||__|||||\n______________GUGGGGG__CGA__AGUAG\n3'-UUU...ACCCC_______AA__________-5'\n_____________|__________________|\n_____________162________________142\n |
113 -- 119 |
11 -- 17 |
-18.8572 kcal/mol |
2.50144 kcal/mol |
7.16879 kcal/mol |
68 85@LB@ | |@LB@5'-ACU...CCAGC GC UU UUCUG...AAU-3'@LB@ CAUUCCC GCU UCAUC@LB@ ||::||| ||| |||||@LB@ GUGGGGG CGA AGUAG@LB@3'-UUU...ACCCC AA -5'@LB@ | |@LB@ 162 142@LB@@LB@@LB@Energy -10.00 kcal/mol@LB@Hybridization Energy -18.8572 kcal/mol@LB@Unfolding Energy - mRNA 2.50144 kcal/mol@LB@Unfolding Energy - sRNA 7.16879 kcal/mol@LB@@LB@Position - mRNA 69 -- 84@LB@Position - sRNA 142 -- 161@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 11 -- 17@LB@ |
195 |
0.02319 |
0.3833 |
b1233 |
ychJ |
-7.86 |
0.620262 |
61 -- 80 |
1 -- 18 |
UPF0225 family protein |
|
_____________60____________________________________81\n_____________|_____________________________________|\n5'-CUU...GCUAC_______________A___CUACU_____________ACGCC...UCA-3'\n______________UGCUCGGUUA_ACAU_GUG_____CAGGC_GGUUAAU\n______________|:|||:||:|_||||_:||_____|||||_:||:||:\n______________AUGAGUCAGU_UGUA_UAC_____GUCCG_UCAGUUG\n3'-UUU...UGGUU__________G____C_____________U_______AAAGU...UAG-5'\n_____________|_____________________________________|\n_____________19____________________________________0\n |
139 -- 145 |
171 -- 177 |
-29.0991 kcal/mol |
9.80481 kcal/mol |
8.18679 kcal/mol |
60 81@LB@ | |@LB@5'-CUU...GCUAC A CUACU ACGCC...UCA-3'@LB@ UGCUCGGUUA ACAU GUG CAGGC GGUUAAU@LB@ |:|||:||:| |||| :|| ||||| :||:||:@LB@ AUGAGUCAGU UGUA UAC GUCCG UCAGUUG@LB@3'-UUU...UGGUU G C U AAAGU...UAG-5'@LB@ | |@LB@ 19 0@LB@@LB@@LB@Energy -7.86 kcal/mol@LB@Hybridization Energy -29.0991 kcal/mol@LB@Unfolding Energy - mRNA 9.80481 kcal/mol@LB@Unfolding Energy - sRNA 8.18679 kcal/mol@LB@@LB@Position - mRNA 61 -- 80@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 171 -- 177@LB@ |
181 |
0.0209 |
0.3833 |
b2233 |
yfaL |
-9.66 |
0.317681 |
275 -- 285 |
50 -- 60 |
adhesin |
|
_____________274______________286\n_____________|________________|\n5'-UAU...UCUCU___AA__G________CGGUC...CAU-3'\n______________GCU__CG_UGUCGCGG\n______________:||__||_||||||||\n______________UGA__GC_ACAGCGCC\n3'-UUU...CGUGU___A___G________AUUUU...UAG-5'\n_____________|________________|\n_____________61_______________49\n |
279 -- 285 |
50 -- 56 |
-20.2435 kcal/mol |
4.65708 kcal/mol |
6.1451 kcal/mol |
274 286@LB@ | |@LB@5'-UAU...UCUCU AA G CGGUC...CAU-3'@LB@ GCU CG UGUCGCGG@LB@ :|| || ||||||||@LB@ UGA GC ACAGCGCC@LB@3'-UUU...CGUGU A G AUUUU...UAG-5'@LB@ | |@LB@ 61 49@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -20.2435 kcal/mol@LB@Unfolding Energy - mRNA 4.65708 kcal/mol@LB@Unfolding Energy - sRNA 6.1451 kcal/mol@LB@@LB@Position - mRNA 275 -- 285@LB@Position - sRNA 50 -- 60@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 50 -- 56@LB@ |
190 |
0.02217 |
0.3833 |
b2754 |
ygbF |
-10.33 |
0.238061 |
176 -- 225 |
124 -- 165 |
CRISPR adaptation ssRNA endonuclease |
|
_____________175____________226\n_____________|______________|\n5'-UGG...AAAAU________GC____ACGAG...GUG-3'\n______________GUACCUCC__GCUU\n______________|:|||:||__||||\n______________CGUGGGGG__CGAA\n3'-UUU...UACCC________AA____GUAG-5'\n_____________|______________|\n_____________166____________123\n |
232 -- 238 |
11 -- 17 |
-17.8256 kcal/mol |
3.33543 kcal/mol |
6.90657 kcal/mol |
175 226@LB@ | |@LB@5'-UGG...AAAAU GC ACGAG...GUG-3'@LB@ GUACCUCC GCUU@LB@ |:|||:|| ||||@LB@ CGUGGGGG CGAA@LB@3'-UUU...UACCC AA GUAG-5'@LB@ | |@LB@ 166 123@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -17.8256 kcal/mol@LB@Unfolding Energy - mRNA 3.33543 kcal/mol@LB@Unfolding Energy - sRNA 6.90657 kcal/mol@LB@@LB@Position - mRNA 176 -- 225@LB@Position - sRNA 124 -- 165@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 11 -- 17@LB@ |
196 |
0.0235 |
0.3833 |
b3105 |
yhaJ |
-11.17 |
0.163135 |
292 -- 299 |
86 -- 93 |
LysR family putative transcriptional regulator |
|
_____________291______300\n_____________|________|\n5'-CGG...UGAGC________G-3'\n______________UGGGACGC\n______________||||||||\n______________ACCCUGCG\n3'-UUU...GCAAC________AAUUG...UAG-5'\n_____________|________|\n_____________94_______85\n |
293 -- 299 |
86 -- 92 |
-14.7688 kcal/mol |
2.10679 kcal/mol |
4.21973 kcal/mol |
291 300@LB@ | |@LB@5'-CGG...UGAGC G-3'@LB@ UGGGACGC@LB@ ||||||||@LB@ ACCCUGCG@LB@3'-UUU...GCAAC AAUUG...UAG-5'@LB@ | |@LB@ 94 85@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -14.7688 kcal/mol@LB@Unfolding Energy - mRNA 2.10679 kcal/mol@LB@Unfolding Energy - sRNA 4.21973 kcal/mol@LB@@LB@Position - mRNA 292 -- 299@LB@Position - sRNA 86 -- 93@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 86 -- 92@LB@ |
187 |
0.02173 |
0.3833 |
b3679 |
yidK |
-10.16 |
0.256396 |
240 -- 256 |
191 -- 205 |
putative transporter |
|
_____________239________________________________________257\n_____________|__________________________________________|\n5'-UUU...UUACG_________GC______________U____GAA_________AAACA...AAG-3'\n______________CUGCUGGUG__GGUGAU____CACC_GGUG___GGUC_CGCA\n______________|||||||:|__||||||____||||_::|:___:|||_|:||\n______________GACGACCGC__CCACUA____GUGG_UUAU___UCAG_GUGU\n3'-UUU...UAUUA_________________AAAU_________GAG____U____ACUAC...UAG-5'\n_____________|__________________________________________|\n_____________206________________________________________190\n |
242 -- 248 |
197 -- 203 |
-39.2862 kcal/mol |
16.885 kcal/mol |
15.3993 kcal/mol |
239 257@LB@ | |@LB@5'-UUU...UUACG GC U GAA AAACA...AAG-3'@LB@ CUGCUGGUG GGUGAU CACC GGUG GGUC CGCA@LB@ |||||||:| |||||| |||| ::|: :||| |:||@LB@ GACGACCGC CCACUA GUGG UUAU UCAG GUGU@LB@3'-UUU...UAUUA AAAU GAG U ACUAC...UAG-5'@LB@ | |@LB@ 206 190@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -39.2862 kcal/mol@LB@Unfolding Energy - mRNA 16.885 kcal/mol@LB@Unfolding Energy - sRNA 15.3993 kcal/mol@LB@@LB@Position - mRNA 240 -- 256@LB@Position - sRNA 191 -- 205@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 197 -- 203@LB@ |
199 |
0.02363 |
0.3833 |
b4141 |
yjeH |
-8.04 |
0.585705 |
57 -- 67 |
64 -- 74 |
putative transporter |
|
_____________56_____________68\n_____________|______________|\n5'-CAG...AAAUC___G_______C__AAAUU...CUG-3'\n______________UAC_CAGUUGC_CA\n______________|||_||||::|_||\n______________AUG_GUCAGUG_GU\n3'-UUU...UGGUU___A_______U__ACUAC...UAG-5'\n_____________|______________|\n_____________75_____________63\n |
163 -- 169 |
170 -- 176 |
-11.2481 kcal/mol |
2.09942 kcal/mol |
0.433965 kcal/mol |
56 68@LB@ | |@LB@5'-CAG...AAAUC G C AAAUU...CUG-3'@LB@ UAC CAGUUGC CA@LB@ ||| ||||::| ||@LB@ AUG GUCAGUG GU@LB@3'-UUU...UGGUU A U ACUAC...UAG-5'@LB@ | |@LB@ 75 63@LB@@LB@@LB@Energy -8.04 kcal/mol@LB@Hybridization Energy -11.2481 kcal/mol@LB@Unfolding Energy - mRNA 2.09942 kcal/mol@LB@Unfolding Energy - sRNA 0.433965 kcal/mol@LB@@LB@Position - mRNA 57 -- 67@LB@Position - sRNA 64 -- 74@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 170 -- 176@LB@ |
192 |
0.02246 |
0.3833 |
b4340 |
yjiR |
-11.68 |
0.128907 |
36 -- 62 |
126 -- 153 |
putative DNA-binding transcriptional regulator/putative aminotransferase |
|
_____________35_______63\n_____________|________|\n5'-AGC...CAGAG________AUCCA...GUC-3'\n______________GCUUCAUC\n______________||||||||\n______________CGAAGUAG\n3'-UUU...GGGAA________-5'\n_____________|_______|\n_____________154_____126\n |
50 -- 56 |
1 -- 7 |
-12.7164 kcal/mol |
1.73081 kcal/mol |
0.703102 kcal/mol |
35 63@LB@ | |@LB@5'-AGC...CAGAG AUCCA...GUC-3'@LB@ GCUUCAUC@LB@ ||||||||@LB@ CGAAGUAG@LB@3'-UUU...GGGAA -5'@LB@ | |@LB@ 154 126@LB@@LB@@LB@Energy -11.68 kcal/mol@LB@Hybridization Energy -12.7164 kcal/mol@LB@Unfolding Energy - mRNA 1.73081 kcal/mol@LB@Unfolding Energy - sRNA 0.703102 kcal/mol@LB@@LB@Position - mRNA 36 -- 62@LB@Position - sRNA 126 -- 153@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 1 -- 7@LB@ |