191 |
0.0398 |
0.6177 |
b4335 |
yjiM |
-5.72 |
0.281824 |
283 -- 290 |
47 -- 54 |
putative 2-hydroxyglutaryl-CoA dehydratase |
|
_____________282______291\n_____________|________|\n5'-CGG...GGAUC________CGCGG...UUC-3'\n______________UCAAGGAG\n______________||||:|||\n______________AGUUUCUC\n3'-UUU...CGGGC________CUUAA...ACA-5'\n_____________|________|\n_____________55_______46\n |
284 -- 290 |
47 -- 53 |
-8.85878 kcal/mol |
2.24401 kcal/mol |
0.897871 kcal/mol |
282 291@LB@ | |@LB@5'-CGG...GGAUC CGCGG...UUC-3'@LB@ UCAAGGAG@LB@ ||||:|||@LB@ AGUUUCUC@LB@3'-UUU...CGGGC CUUAA...ACA-5'@LB@ | |@LB@ 55 46@LB@@LB@@LB@Energy -5.72 kcal/mol@LB@Hybridization Energy -8.85878 kcal/mol@LB@Unfolding Energy - mRNA 2.24401 kcal/mol@LB@Unfolding Energy - sRNA 0.897871 kcal/mol@LB@@LB@Position - mRNA 283 -- 290@LB@Position - sRNA 47 -- 54@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 47 -- 53@LB@ |
192 |
0.04008 |
0.6177 |
b2822 |
recC |
-5.02 |
0.370915 |
179 -- 195 |
44 -- 57 |
exonuclease V (RecBCD complex) gamma chain |
|
_____________178_______________196\n_____________|_________________|\n5'-AGU...CCGAA_______U__UC_____CCGCU...AGA-3'\n______________UCGUCAG_AG__AGGAG\n______________:|||||:_||__||||:\n______________GGCAGUU_UC__UCCUU\n3'-UUU...AACCG_________________AAAGU...ACA-5'\n_____________|_________________|\n_____________58________________43\n |
179 -- 185 |
51 -- 57 |
-11.1502 kcal/mol |
3.39036 kcal/mol |
2.73756 kcal/mol |
178 196@LB@ | |@LB@5'-AGU...CCGAA U UC CCGCU...AGA-3'@LB@ UCGUCAG AG AGGAG@LB@ :|||||: || ||||:@LB@ GGCAGUU UC UCCUU@LB@3'-UUU...AACCG AAAGU...ACA-5'@LB@ | |@LB@ 58 43@LB@@LB@@LB@Energy -5.02 kcal/mol@LB@Hybridization Energy -11.1502 kcal/mol@LB@Unfolding Energy - mRNA 3.39036 kcal/mol@LB@Unfolding Energy - sRNA 2.73756 kcal/mol@LB@@LB@Position - mRNA 179 -- 195@LB@Position - sRNA 44 -- 57@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 51 -- 57@LB@ |
193 |
0.04043 |
0.6177 |
b1180 |
ycgM |
-6.42 |
0.210248 |
289 -- 296 |
47 -- 54 |
putative isomerase/hydrolase |
|
_____________288______297\n_____________|________|\n5'-GAU...ACAUA________AUGG-3'\n______________UUAAAGAG\n______________|:||||||\n______________AGUUUCUC\n3'-UUU...CGGGC________CUUAA...ACA-5'\n_____________|________|\n_____________55_______46\n |
290 -- 296 |
47 -- 53 |
-7.63974 kcal/mol |
0.325787 kcal/mol |
0.897871 kcal/mol |
288 297@LB@ | |@LB@5'-GAU...ACAUA AUGG-3'@LB@ UUAAAGAG@LB@ |:||||||@LB@ AGUUUCUC@LB@3'-UUU...CGGGC CUUAA...ACA-5'@LB@ | |@LB@ 55 46@LB@@LB@@LB@Energy -6.42 kcal/mol@LB@Hybridization Energy -7.63974 kcal/mol@LB@Unfolding Energy - mRNA 0.325787 kcal/mol@LB@Unfolding Energy - sRNA 0.897871 kcal/mol@LB@@LB@Position - mRNA 289 -- 296@LB@Position - sRNA 47 -- 54@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 47 -- 53@LB@ |
194 |
0.04051 |
0.6177 |
b0814 |
ompX |
-6.96 |
0.165642 |
107 -- 118 |
50 -- 61 |
outer membrane protein X |
|
_____________106__________119\n_____________|____________|\n5'-CUG...UGAAA____________CAUCA...CAC-3'\n______________UGGCCCGUUAGA\n______________||||||||:|:|\n______________ACCGGGCAGUUU\n3'-UUU...CGAUA____________CUCCU...ACA-5'\n_____________|____________|\n_____________62___________49\n |
111 -- 117 |
51 -- 57 |
-20.1081 kcal/mol |
2.98628 kcal/mol |
10.1573 kcal/mol |
106 119@LB@ | |@LB@5'-CUG...UGAAA CAUCA...CAC-3'@LB@ UGGCCCGUUAGA@LB@ ||||||||:|:|@LB@ ACCGGGCAGUUU@LB@3'-UUU...CGAUA CUCCU...ACA-5'@LB@ | |@LB@ 62 49@LB@@LB@@LB@Energy -6.96 kcal/mol@LB@Hybridization Energy -20.1081 kcal/mol@LB@Unfolding Energy - mRNA 2.98628 kcal/mol@LB@Unfolding Energy - sRNA 10.1573 kcal/mol@LB@@LB@Position - mRNA 107 -- 118@LB@Position - sRNA 50 -- 61@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 51 -- 57@LB@ |
195 |
0.04073 |
0.6177 |
b3166 |
truB |
-9.24 |
0.058593 |
189 -- 197 |
45 -- 53 |
tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
|
_____________188_______198\n_____________|_________|\n5'-GGC...GACAG_________CUAAU...AAC-3'\n______________CAAGGAGGA\n______________|||:|||||\n______________GUUUCUCCU\n3'-UUU...GGGCA_________UAAAG...ACA-5'\n_____________|_________|\n_____________54________44\n |
191 -- 197 |
45 -- 51 |
-13.1895 kcal/mol |
3.02734 kcal/mol |
0.917553 kcal/mol |
188 198@LB@ | |@LB@5'-GGC...GACAG CUAAU...AAC-3'@LB@ CAAGGAGGA@LB@ |||:|||||@LB@ GUUUCUCCU@LB@3'-UUU...GGGCA UAAAG...ACA-5'@LB@ | |@LB@ 54 44@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -13.1895 kcal/mol@LB@Unfolding Energy - mRNA 3.02734 kcal/mol@LB@Unfolding Energy - sRNA 0.917553 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 45 -- 53@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 45 -- 51@LB@ |
196 |
0.04084 |
0.6177 |
b3137 |
kbaY |
-7.51 |
0.129887 |
187 -- 200 |
37 -- 51 |
tagatose 6-phosphate aldolase 1 kbaY subunit |
b2096 |
_____________186_____________201\n_____________|_______________|\n5'-CAC...GGCAU_______UCG_____AUGAG...CGA-3'\n______________AAGAGGA____CAUU\n______________|||||||____||||\n______________UUCUCCU____GUAA\n3'-UUU...GCAGU_______UAAA____AAAAA...ACA-5'\n_____________|_______________|\n_____________52______________36\n |
187 -- 193 |
45 -- 51 |
-11.4071 kcal/mol |
2.82588 kcal/mol |
1.07049 kcal/mol |
186 201@LB@ | |@LB@5'-CAC...GGCAU UCG AUGAG...CGA-3'@LB@ AAGAGGA CAUU@LB@ ||||||| ||||@LB@ UUCUCCU GUAA@LB@3'-UUU...GCAGU UAAA AAAAA...ACA-5'@LB@ | |@LB@ 52 36@LB@@LB@@LB@Energy -7.51 kcal/mol@LB@Hybridization Energy -11.4071 kcal/mol@LB@Unfolding Energy - mRNA 2.82588 kcal/mol@LB@Unfolding Energy - sRNA 1.07049 kcal/mol@LB@@LB@Position - mRNA 187 -- 200@LB@Position - sRNA 37 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 45 -- 51@LB@ |
197 |
0.04129 |
0.6177 |
b1205 |
ychH |
-8.72 |
0.074776 |
153 -- 162 |
43 -- 52 |
DUF2583 family putative inner membrane protein |
|
_____________152________163\n_____________|__________|\n5'-CAA...AUAAG__________AUUCC...UAC-3'\n______________GAAGAGGGGU\n______________:||||||::|\n______________UUUCUCCUUA\n3'-UUU...GGCAG__________AAGUA...ACA-5'\n_____________|__________|\n_____________53_________42\n |
156 -- 162 |
43 -- 49 |
-11.7568 kcal/mol |
2.17132 kcal/mol |
0.865937 kcal/mol |
152 163@LB@ | |@LB@5'-CAA...AUAAG AUUCC...UAC-3'@LB@ GAAGAGGGGU@LB@ :||||||::|@LB@ UUUCUCCUUA@LB@3'-UUU...GGCAG AAGUA...ACA-5'@LB@ | |@LB@ 53 42@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -11.7568 kcal/mol@LB@Unfolding Energy - mRNA 2.17132 kcal/mol@LB@Unfolding Energy - sRNA 0.865937 kcal/mol@LB@@LB@Position - mRNA 153 -- 162@LB@Position - sRNA 43 -- 52@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 43 -- 49@LB@ |
198 |
0.04148 |
0.6177 |
b1067 |
yceH |
-6.24 |
0.226874 |
185 -- 202 |
38 -- 56 |
UPF0502 family protein |
|
_____________184_________________203\n_____________|___________________|\n5'-GCA...CCGGC__C___________C____GAAAU...GUG-3'\n______________CG_UAAGGAG_AAU_UCAU\n______________||_:||:|||_|||_||||\n______________GC_GUUUCUC_UUA_AGUA\n3'-UUU...ACCGG__A_______C___A____AAAAA...ACA-5'\n_____________|___________________|\n_____________57__________________37\n |
188 -- 194 |
47 -- 53 |
-10.8881 kcal/mol |
3.47135 kcal/mol |
1.17918 kcal/mol |
184 203@LB@ | |@LB@5'-GCA...CCGGC C C GAAAU...GUG-3'@LB@ CG UAAGGAG AAU UCAU@LB@ || :||:||| ||| ||||@LB@ GC GUUUCUC UUA AGUA@LB@3'-UUU...ACCGG A C A AAAAA...ACA-5'@LB@ | |@LB@ 57 37@LB@@LB@@LB@Energy -6.24 kcal/mol@LB@Hybridization Energy -10.8881 kcal/mol@LB@Unfolding Energy - mRNA 3.47135 kcal/mol@LB@Unfolding Energy - sRNA 1.17918 kcal/mol@LB@@LB@Position - mRNA 185 -- 202@LB@Position - sRNA 38 -- 56@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 47 -- 53@LB@ |
199 |
0.0417 |
0.6177 |
b4070 |
nrfA |
-7.95 |
0.106497 |
2 -- 16 |
44 -- 55 |
nitrite reductase formate-dependent cytochrome |
|
_____________1_______________17\n_____________|_______________|\n__________5'-U___GAA_________GAUAC...CAA-3'\n______________GUU___AAAGAGGAA\n______________||:___|||||||||\n______________CAG___UUUCUCCUU\n3'-UUU...CCGGG_______________AAAGU...ACA-5'\n_____________|_______________|\n_____________56______________43\n |
10 -- 16 |
44 -- 50 |
-11.2989 kcal/mol |
2.40804 kcal/mol |
0.941432 kcal/mol |
1 17@LB@ | |@LB@ 5'-U GAA GAUAC...CAA-3'@LB@ GUU AAAGAGGAA@LB@ ||: |||||||||@LB@ CAG UUUCUCCUU@LB@3'-UUU...CCGGG AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -7.95 kcal/mol@LB@Hybridization Energy -11.2989 kcal/mol@LB@Unfolding Energy - mRNA 2.40804 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 2 -- 16@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 44 -- 50@LB@ |
200 |
0.04173 |
0.6177 |
b3155 |
yhbQ |
-7.74 |
0.117248 |
9 -- 16 |
50 -- 57 |
GIY-YIG nuclease superfamily protein |
|
_____________8________17\n_____________|________|\n___5'-UUUUUCUU________AUGUA...GCG-3'\n______________CCGUCAAA\n______________||||||||\n______________GGCAGUUU\n3'-UUU...AACCG________CUCCU...ACA-5'\n_____________|________|\n_____________58_______49\n |
10 -- 16 |
50 -- 56 |
-10.5697 kcal/mol |
0.110673 kcal/mol |
2.72137 kcal/mol |
8 17@LB@ | |@LB@ 5'-UUUUUCUU AUGUA...GCG-3'@LB@ CCGUCAAA@LB@ ||||||||@LB@ GGCAGUUU@LB@3'-UUU...AACCG CUCCU...ACA-5'@LB@ | |@LB@ 58 49@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -10.5697 kcal/mol@LB@Unfolding Energy - mRNA 0.110673 kcal/mol@LB@Unfolding Energy - sRNA 2.72137 kcal/mol@LB@@LB@Position - mRNA 9 -- 16@LB@Position - sRNA 50 -- 57@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 50 -- 56@LB@ |