186 |
0.03285 |
0.5559 |
b1003 |
yccJ |
-7.53 |
0.270746 |
41 -- 54 |
75 -- 88 |
uncharacterized protein |
|
_____________40_____________55\n_____________|______________|\n5'-CCU...UUCAC_________GC___ACGCC...GGU-3'\n______________AGGUUCGCG__GGU\n______________|:||||:||__||:\n______________UUCAAGUGC__CCG\n3'-CGC...GCGUU_________AA___AAAUC...AAG-5'\n_____________|______________|\n_____________89_____________74\n |
43 -- 49 |
80 -- 86 |
-16.6206 kcal/mol |
8.57413 kcal/mol |
0.515884 kcal/mol |
40 55@LB@ | |@LB@5'-CCU...UUCAC GC ACGCC...GGU-3'@LB@ AGGUUCGCG GGU@LB@ |:||||:|| ||:@LB@ UUCAAGUGC CCG@LB@3'-CGC...GCGUU AA AAAUC...AAG-5'@LB@ | |@LB@ 89 74@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -16.6206 kcal/mol@LB@Unfolding Energy - mRNA 8.57413 kcal/mol@LB@Unfolding Energy - sRNA 0.515884 kcal/mol@LB@@LB@Position - mRNA 41 -- 54@LB@Position - sRNA 75 -- 88@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 80 -- 86@LB@ |
200 |
0.03481 |
0.5559 |
b1058 |
yceO |
-9.40 |
0.133707 |
85 -- 100 |
70 -- 85 |
uncharacterized protein |
|
_____________84_______________101\n_____________|________________|\n5'-CCU...UUAAA_______CA_______GGGAA...GAU-3'\n______________UUUGCGU__GUUUUAG\n______________||::|||__|:|||||\n______________AAGUGCA__CGAAAUC\n3'-CGC...UUUUC_______AC_______AAUAA...AAG-5'\n_____________|________________|\n_____________86_______________69\n |
94 -- 100 |
70 -- 76 |
-11.7699 kcal/mol |
1.79867 kcal/mol |
0.567379 kcal/mol |
84 101@LB@ | |@LB@5'-CCU...UUAAA CA GGGAA...GAU-3'@LB@ UUUGCGU GUUUUAG@LB@ ||::||| |:|||||@LB@ AAGUGCA CGAAAUC@LB@3'-CGC...UUUUC AC AAUAA...AAG-5'@LB@ | |@LB@ 86 69@LB@@LB@@LB@Energy -9.40 kcal/mol@LB@Hybridization Energy -11.7699 kcal/mol@LB@Unfolding Energy - mRNA 1.79867 kcal/mol@LB@Unfolding Energy - sRNA 0.567379 kcal/mol@LB@@LB@Position - mRNA 85 -- 100@LB@Position - sRNA 70 -- 85@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 70 -- 76@LB@ |
34 |
0.00612 |
0.5385 |
b1837 |
yebW |
-12.39 |
0.040382 |
203 -- 226 |
63 -- 86 |
uncharacterized protein |
|
_____________202______________________227\n_____________|________________________|\n5'-ACC...GAAAU_______C____ACUUU_______CUACC...UGA-3'\n______________GUUCGCG_UGGU_____UUGUUUG\n______________||||:||_|||:_____||:||:|\n______________CAAGUGC_ACCG_____AAUAAGC\n3'-CGC...GUUUU_______A____AAAUC_______UCAAC...AAG-5'\n_____________|________________________|\n_____________87_______________________62\n |
220 -- 226 |
63 -- 69 |
-18.9836 kcal/mol |
4.90011 kcal/mol |
1.69827 kcal/mol |
202 227@LB@ | |@LB@5'-ACC...GAAAU C ACUUU CUACC...UGA-3'@LB@ GUUCGCG UGGU UUGUUUG@LB@ ||||:|| |||: ||:||:|@LB@ CAAGUGC ACCG AAUAAGC@LB@3'-CGC...GUUUU A AAAUC UCAAC...AAG-5'@LB@ | |@LB@ 87 62@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -18.9836 kcal/mol@LB@Unfolding Energy - mRNA 4.90011 kcal/mol@LB@Unfolding Energy - sRNA 1.69827 kcal/mol@LB@@LB@Position - mRNA 203 -- 226@LB@Position - sRNA 63 -- 86@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 63 -- 69@LB@ |
158 |
0.02721 |
0.5559 |
b1724 |
ydiZ |
-8.58 |
0.183444 |
272 -- 279 |
57 -- 64 |
uncharacterized protein |
|
_____________271______280\n_____________|________|\n5'-UUU...AUUAA________AUAAU...ACG-3'\n______________CGAGUUGA\n______________||||||||\n______________GCUCAACU\n3'-CGC...AAUAA________CUUUG...AAG-5'\n_____________|________|\n_____________65_______56\n |
273 -- 279 |
57 -- 63 |
-11.4752 kcal/mol |
1.7639 kcal/mol |
1.12823 kcal/mol |
271 280@LB@ | |@LB@5'-UUU...AUUAA AUAAU...ACG-3'@LB@ CGAGUUGA@LB@ ||||||||@LB@ GCUCAACU@LB@3'-CGC...AAUAA CUUUG...AAG-5'@LB@ | |@LB@ 65 56@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -11.4752 kcal/mol@LB@Unfolding Energy - mRNA 1.7639 kcal/mol@LB@Unfolding Energy - sRNA 1.12823 kcal/mol@LB@@LB@Position - mRNA 272 -- 279@LB@Position - sRNA 57 -- 64@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 57 -- 63@LB@ |
127 |
0.02181 |
0.5385 |
b3057 |
bacA |
-7.57 |
0.267037 |
62 -- 69 |
75 -- 82 |
undecaprenyl pyrophosphate phosphatase |
|
_____________61_______70\n_____________|________|\n5'-UUC...GGCGA________GUAAU...UUG-3'\n______________AUGUUGGC\n______________|:||||||\n______________UGCAACCG\n3'-CGC...UCAAG________AAAUC...AAG-5'\n_____________|________|\n_____________83_______74\n |
63 -- 69 |
75 -- 81 |
-12.0605 kcal/mol |
4.15225 kcal/mol |
0.339284 kcal/mol |
61 70@LB@ | |@LB@5'-UUC...GGCGA GUAAU...UUG-3'@LB@ AUGUUGGC@LB@ |:||||||@LB@ UGCAACCG@LB@3'-CGC...UCAAG AAAUC...AAG-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -12.0605 kcal/mol@LB@Unfolding Energy - mRNA 4.15225 kcal/mol@LB@Unfolding Energy - sRNA 0.339284 kcal/mol@LB@@LB@Position - mRNA 62 -- 69@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 75 -- 81@LB@ |
69 |
0.01301 |
0.5385 |
b0174 |
ispU |
-11.35 |
0.061456 |
97 -- 106 |
71 -- 80 |
undecaprenyl pyrophosphate synthase |
|
_____________96_________107\n_____________|__________|\n5'-CGU...AAGUA__________UAAGG...AAA-3'\n______________GUUGGCUUUA\n______________||||||||||\n______________CAACCGAAAU\n3'-CGC...AAGUG__________CAAUA...AAG-5'\n_____________|__________|\n_____________81_________70\n |
100 -- 106 |
71 -- 77 |
-14.3232 kcal/mol |
2.73321 kcal/mol |
0.236872 kcal/mol |
96 107@LB@ | |@LB@5'-CGU...AAGUA UAAGG...AAA-3'@LB@ GUUGGCUUUA@LB@ ||||||||||@LB@ CAACCGAAAU@LB@3'-CGC...AAGUG CAAUA...AAG-5'@LB@ | |@LB@ 81 70@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -14.3232 kcal/mol@LB@Unfolding Energy - mRNA 2.73321 kcal/mol@LB@Unfolding Energy - sRNA 0.236872 kcal/mol@LB@@LB@Position - mRNA 97 -- 106@LB@Position - sRNA 71 -- 80@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 71 -- 77@LB@ |
54 |
0.01077 |
0.5385 |
b1820 |
yobD |
-10.70 |
0.079862 |
85 -- 97 |
73 -- 84 |
UPF0266 family inner membrane protein |
|
_____________84____________98\n_____________|_____________|\n5'-ACC...GUGGA___U_________CUUCG...CCC-3'\n______________UCA_CGUUGGCUU\n______________|||_|||||||||\n______________AGU_GCAACCGAA\n3'-CGC...UUUCA_____________AUCAA...AAG-5'\n_____________|_____________|\n_____________85____________72\n |
91 -- 97 |
73 -- 79 |
-16.3135 kcal/mol |
5.10116 kcal/mol |
0.508835 kcal/mol |
84 98@LB@ | |@LB@5'-ACC...GUGGA U CUUCG...CCC-3'@LB@ UCA CGUUGGCUU@LB@ ||| |||||||||@LB@ AGU GCAACCGAA@LB@3'-CGC...UUUCA AUCAA...AAG-5'@LB@ | |@LB@ 85 72@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -16.3135 kcal/mol@LB@Unfolding Energy - mRNA 5.10116 kcal/mol@LB@Unfolding Energy - sRNA 0.508835 kcal/mol@LB@@LB@Position - mRNA 85 -- 97@LB@Position - sRNA 73 -- 84@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 73 -- 79@LB@ |
49 |
0.01016 |
0.5385 |
b3354 |
yheU |
-13.31 |
0.027656 |
105 -- 118 |
71 -- 84 |
UPF0270 family protein |
|
_____________104____________119\n_____________|______________|\n5'-CUG...GGCGG______________UUGGC...GUA-3'\n______________UCAUGUUGGCUUUA\n______________|||:||||||||||\n______________AGUGCAACCGAAAU\n3'-CGC...UUUCA______________CAAUA...AAG-5'\n_____________|______________|\n_____________85_____________70\n |
112 -- 118 |
71 -- 77 |
-20.4483 kcal/mol |
6.58199 kcal/mol |
0.5567 kcal/mol |
104 119@LB@ | |@LB@5'-CUG...GGCGG UUGGC...GUA-3'@LB@ UCAUGUUGGCUUUA@LB@ |||:||||||||||@LB@ AGUGCAACCGAAAU@LB@3'-CGC...UUUCA CAAUA...AAG-5'@LB@ | |@LB@ 85 70@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -20.4483 kcal/mol@LB@Unfolding Energy - mRNA 6.58199 kcal/mol@LB@Unfolding Energy - sRNA 0.5567 kcal/mol@LB@@LB@Position - mRNA 105 -- 118@LB@Position - sRNA 71 -- 84@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 71 -- 77@LB@ |
77 |
0.01396 |
0.5385 |
b3644 |
yicC |
-11.79 |
0.051421 |
238 -- 254 |
15 -- 31 |
UPF0701 family protein |
|
_____________237_______________255\n_____________|_________________|\n5'-UCU...UGAAA________GAAU_____AGCGC...AAA-3'\n______________UCAAGGGU____GGGGG\n______________||||||||____:|:||\n______________AGUUCCCA____UCUCC\n3'-CGC...ACUGA________AUUU_____ACGGC...AAG-5'\n_____________|_________________|\n_____________32________________14\n |
239 -- 245 |
24 -- 30 |
-20.4957 kcal/mol |
5.4171 kcal/mol |
3.28624 kcal/mol |
237 255@LB@ | |@LB@5'-UCU...UGAAA GAAU AGCGC...AAA-3'@LB@ UCAAGGGU GGGGG@LB@ |||||||| :|:||@LB@ AGUUCCCA UCUCC@LB@3'-CGC...ACUGA AUUU ACGGC...AAG-5'@LB@ | |@LB@ 32 14@LB@@LB@@LB@Energy -11.79 kcal/mol@LB@Hybridization Energy -20.4957 kcal/mol@LB@Unfolding Energy - mRNA 5.4171 kcal/mol@LB@Unfolding Energy - sRNA 3.28624 kcal/mol@LB@@LB@Position - mRNA 238 -- 254@LB@Position - sRNA 15 -- 31@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 24 -- 30@LB@ |
9 |
0.0016 |
0.5385 |
b1709 |
btuD |
-9.25 |
0.141890 |
185 -- 194 |
75 -- 84 |
vitamin B12 ABC transporter ATPase |
|
_____________184________195\n_____________|__________|\n5'-GCA...UAAAC_G________AAAAU...GGC-3'\n______________U_GCGUUGGC\n______________|_:|||||||\n______________A_UGCAACCG\n3'-CGC...UUUCA_G________AAAUC...AAG-5'\n_____________|__________|\n_____________85_________74\n |
188 -- 194 |
75 -- 81 |
-15.1998 kcal/mol |
5.44246 kcal/mol |
0.505918 kcal/mol |
184 195@LB@ | |@LB@5'-GCA...UAAAC G AAAAU...GGC-3'@LB@ U GCGUUGGC@LB@ | :|||||||@LB@ A UGCAACCG@LB@3'-CGC...UUUCA G AAAUC...AAG-5'@LB@ | |@LB@ 85 74@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -15.1998 kcal/mol@LB@Unfolding Energy - mRNA 5.44246 kcal/mol@LB@Unfolding Energy - sRNA 0.505918 kcal/mol@LB@@LB@Position - mRNA 185 -- 194@LB@Position - sRNA 75 -- 84@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 75 -- 81@LB@ |