29 |
0.000834 |
0.09021 |
b2798 |
ygdG |
-11.41 |
0.005967 |
211 -- 245 |
24 -- 57 |
Ssb-binding protein misidentified as ExoIX |
|
_____________210_________________________________246\n_____________|___________________________________|\n5'-CCA...UGUUC_________UUGUC__U_____GAAUCUU______CGCAU...UCG-3'\n______________AUUUGCUUA_____GA_GCACU_______AUUCGU\n______________|:|||||||_____||_|||||_______||||||\n______________UGAACGAAU_____CU_CGUGA_______UAAGCA\n3'-UUU...UACUU_________UCGUU__U_____AUUUUU_______AUGUG...CAA-5'\n_____________|___________________________________|\n_____________58__________________________________23\n |
213 -- 219 |
49 -- 55 |
-23.2646 kcal/mol |
5.57825 kcal/mol |
6.27607 kcal/mol |
210 246@LB@ | |@LB@5'-CCA...UGUUC UUGUC U GAAUCUU CGCAU...UCG-3'@LB@ AUUUGCUUA GA GCACU AUUCGU@LB@ |:||||||| || ||||| ||||||@LB@ UGAACGAAU CU CGUGA UAAGCA@LB@3'-UUU...UACUU UCGUU U AUUUUU AUGUG...CAA-5'@LB@ | |@LB@ 58 23@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -23.2646 kcal/mol@LB@Unfolding Energy - mRNA 5.57825 kcal/mol@LB@Unfolding Energy - sRNA 6.27607 kcal/mol@LB@@LB@Position - mRNA 211 -- 245@LB@Position - sRNA 24 -- 57@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 49 -- 55@LB@ |
130 |
0.01234 |
0.3033 |
b2958 |
yggN |
-5.61 |
0.236844 |
227 -- 233 |
35 -- 41 |
DUF2884 family putative periplasmic protein |
|
_____________226_____234\n_____________|_______|\n5'-ACG...GCGGC_______UCAGU...UUG-3'\n______________AGCACUU\n______________|||||||\n______________UCGUGAA\n3'-UUU...GUUCU_______UUUUU...CAA-5'\n_____________|_______|\n_____________42______34\n |
227 -- 233 |
35 -- 41 |
-8.1936 kcal/mol |
0.976472 kcal/mol |
1.6033 kcal/mol |
226 234@LB@ | |@LB@5'-ACG...GCGGC UCAGU...UUG-3'@LB@ AGCACUU@LB@ |||||||@LB@ UCGUGAA@LB@3'-UUU...GUUCU UUUUU...CAA-5'@LB@ | |@LB@ 42 34@LB@@LB@@LB@Energy -5.61 kcal/mol@LB@Hybridization Energy -8.1936 kcal/mol@LB@Unfolding Energy - mRNA 0.976472 kcal/mol@LB@Unfolding Energy - sRNA 1.6033 kcal/mol@LB@@LB@Position - mRNA 227 -- 233@LB@Position - sRNA 35 -- 41@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 35 -- 41@LB@ |
46 |
0.002046 |
0.1433 |
b3106 |
yhaK |
-10.10 |
0.015122 |
97 -- 120 |
7 -- 28 |
redox-sensitive bicupin |
|
_____________96_______________________121\n_____________|________________________|\n5'-UCC...GCCAU______CU__U_____________ACAUA...AAU-3'\n______________UUCGUU__CA_UCAGGAAAUUUGA\n______________||||||__||_:||||||||:|||\n______________AAGCAA__GU_GGUCCUUUAGACU\n3'-UUU...UUUUU______U_________________ACACAA-5'\n_____________|________________________|\n_____________29_______________________6\n |
111 -- 117 |
10 -- 16 |
-23.1033 kcal/mol |
4.40095 kcal/mol |
8.59864 kcal/mol |
96 121@LB@ | |@LB@5'-UCC...GCCAU CU U ACAUA...AAU-3'@LB@ UUCGUU CA UCAGGAAAUUUGA@LB@ |||||| || :||||||||:|||@LB@ AAGCAA GU GGUCCUUUAGACU@LB@3'-UUU...UUUUU U ACACAA-5'@LB@ | |@LB@ 29 6@LB@@LB@@LB@Energy -10.10 kcal/mol@LB@Hybridization Energy -23.1033 kcal/mol@LB@Unfolding Energy - mRNA 4.40095 kcal/mol@LB@Unfolding Energy - sRNA 8.59864 kcal/mol@LB@@LB@Position - mRNA 97 -- 120@LB@Position - sRNA 7 -- 28@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 10 -- 16@LB@ |
25 |
0.0007384 |
0.09021 |
b3434 |
yhgN |
-11.94 |
0.004015 |
159 -- 197 |
7 -- 41 |
UPF0056 family inner membrane protein |
|
_____________158_____________________________________198\n_____________|_______________________________________|\n5'-UUU...UUGUU_____GC_______CCG__GCAAU_______________GUUAU...CGA-3'\n______________AGCAC__AGAAAGU___CG_____UAUCAGGGAAUUUGA\n______________|||||__|:|||:|___||_____:|:||||:|||:|||\n______________UCGUG__UUUUUUA___GC_____GUGGUCCUUUAGACU\n3'-UUU...GUUCU_____AA_______A____AAU_________________ACACAA-5'\n_____________|_______________________________________|\n_____________42______________________________________6\n |
188 -- 194 |
10 -- 16 |
-30.001 kcal/mol |
8.83552 kcal/mol |
9.22092 kcal/mol |
158 198@LB@ | |@LB@5'-UUU...UUGUU GC CCG GCAAU GUUAU...CGA-3'@LB@ AGCAC AGAAAGU CG UAUCAGGGAAUUUGA@LB@ ||||| |:|||:| || :|:||||:|||:|||@LB@ UCGUG UUUUUUA GC GUGGUCCUUUAGACU@LB@3'-UUU...GUUCU AA A AAU ACACAA-5'@LB@ | |@LB@ 42 6@LB@@LB@@LB@Energy -11.94 kcal/mol@LB@Hybridization Energy -30.001 kcal/mol@LB@Unfolding Energy - mRNA 8.83552 kcal/mol@LB@Unfolding Energy - sRNA 9.22092 kcal/mol@LB@@LB@Position - mRNA 159 -- 197@LB@Position - sRNA 7 -- 41@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 10 -- 16@LB@ |
52 |
0.002466 |
0.1527 |
b3527 |
yhjJ |
-8.40 |
0.046956 |
207 -- 220 |
25 -- 41 |
putative periplasmic M16 family chaperone |
|
_____________206_______________221\n_____________|_________________|\n5'-CUC...UGCAG_________________ACUUU...GGC-3'\n______________GGCAC___AAAAAUUCG\n______________:||||___|||||||||\n______________UCGUG___UUUUUAAGC\n3'-UUU...GUUCU_____AAU_________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
214 -- 220 |
25 -- 31 |
-13.4116 kcal/mol |
3.36563 kcal/mol |
1.64839 kcal/mol |
206 221@LB@ | |@LB@5'-CUC...UGCAG ACUUU...GGC-3'@LB@ GGCAC AAAAAUUCG@LB@ :|||| |||||||||@LB@ UCGUG UUUUUAAGC@LB@3'-UUU...GUUCU AAU AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -13.4116 kcal/mol@LB@Unfolding Energy - mRNA 3.36563 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 207 -- 220@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 25 -- 31@LB@ |
144 |
0.01453 |
0.3231 |
b3614 |
yibQ |
-4.49 |
0.404320 |
261 -- 267 |
34 -- 40 |
putative polysaccharide deacetylase |
|
_____________260_____268\n_____________|_______|\n5'-UGG...CCCCC_______CUGGC...UUG-3'\n______________GUACUUG\n______________|:||||:\n______________CGUGAAU\n3'-UUU...UUCUU_______UUUUU...CAA-5'\n_____________|_______|\n_____________41______33\n |
261 -- 267 |
34 -- 40 |
-7.10274 kcal/mol |
0.998159 kcal/mol |
1.61352 kcal/mol |
260 268@LB@ | |@LB@5'-UGG...CCCCC CUGGC...UUG-3'@LB@ GUACUUG@LB@ |:||||:@LB@ CGUGAAU@LB@3'-UUU...UUCUU UUUUU...CAA-5'@LB@ | |@LB@ 41 33@LB@@LB@@LB@Energy -4.49 kcal/mol@LB@Hybridization Energy -7.10274 kcal/mol@LB@Unfolding Energy - mRNA 0.998159 kcal/mol@LB@Unfolding Energy - sRNA 1.61352 kcal/mol@LB@@LB@Position - mRNA 261 -- 267@LB@Position - sRNA 34 -- 40@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 34 -- 40@LB@ |
12 |
0.0001753 |
0.04706 |
b3676 |
yidH |
-12.46 |
0.002725 |
279 -- 300 |
7 -- 26 |
DUF202 family inner membrane protein |
|
_____________278___________________300\n_____________|_____________________|\n5'-GCC...GGAUC___AC__________UU_____-3'\n______________CGU__UGCACUAGGA__UCUGG\n______________|||__|:|||:||||__||||:\n______________GCA__AUGUGGUCCU__AGACU\n3'-UUU...UUUAA_______________UU_____ACACAA-5'\n_____________|______________________|\n_____________27_____________________6\n |
286 -- 292 |
15 -- 21 |
-23.8048 kcal/mol |
2.98352 kcal/mol |
8.36616 kcal/mol |
278 300@LB@ | |@LB@5'-GCC...GGAUC AC UU -3'@LB@ CGU UGCACUAGGA UCUGG@LB@ ||| |:|||:|||| ||||:@LB@ GCA AUGUGGUCCU AGACU@LB@3'-UUU...UUUAA UU ACACAA-5'@LB@ | |@LB@ 27 6@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -23.8048 kcal/mol@LB@Unfolding Energy - mRNA 2.98352 kcal/mol@LB@Unfolding Energy - sRNA 8.36616 kcal/mol@LB@@LB@Position - mRNA 279 -- 300@LB@Position - sRNA 7 -- 26@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 15 -- 21@LB@ |
139 |
0.01338 |
0.3093 |
b3765 |
yifB |
-8.91 |
0.033732 |
103 -- 139 |
26 -- 57 |
magnesium chelatase family protein and putative transcriptional regulator |
|
_____________102______________________________________140\n_____________|________________________________________|\n5'-AAA...ACUUC______ACAAA___A_____AUC__C______________ACGAA...CGA-3'\n______________ACUUGC_____UAA_CAGGA___AG_CACU___AAAAUUC\n______________||||||_____|||_||:||___||_||||___|||||||\n______________UGAACG_____AUU_GUUCU___UC_GUGA___UUUUAAG\n3'-UUU...UACUU______A_______C_______________AUU_______CAAUG...CAA-5'\n_____________|________________________________________|\n_____________58_______________________________________25\n |
133 -- 139 |
26 -- 32 |
-18.0428 kcal/mol |
2.85625 kcal/mol |
6.27605 kcal/mol |
102 140@LB@ | |@LB@5'-AAA...ACUUC ACAAA A AUC C ACGAA...CGA-3'@LB@ ACUUGC UAA CAGGA AG CACU AAAAUUC@LB@ |||||| ||| ||:|| || |||| |||||||@LB@ UGAACG AUU GUUCU UC GUGA UUUUAAG@LB@3'-UUU...UACUU A C AUU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -8.91 kcal/mol@LB@Hybridization Energy -18.0428 kcal/mol@LB@Unfolding Energy - mRNA 2.85625 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 103 -- 139@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 26 -- 32@LB@ |
197 |
0.0237 |
0.3864 |
b4001 |
yjaH |
-6.58 |
0.140477 |
149 -- 175 |
29 -- 57 |
DUF1481 family putative lipoprotein |
|
_____________148____________________________176\n_____________|______________________________|\n5'-UGG...CCGGC________CU____________________CGCAG...AUA-3'\n______________AUUUGUUU__GGCA__AGGCACU_GAAAGA\n______________|:|||:||__:|||__|:|||||_:|||:|\n______________UGAACGAA__UCGU__UUCGUGA_UUUUUU\n3'-UUU...UACUU________U_____UC_______A______AAGCA...CAA-5'\n_____________|______________________________|\n_____________58_____________________________28\n |
163 -- 169 |
36 -- 42 |
-19.7163 kcal/mol |
6.91297 kcal/mol |
6.22375 kcal/mol |
148 176@LB@ | |@LB@5'-UGG...CCGGC CU CGCAG...AUA-3'@LB@ AUUUGUUU GGCA AGGCACU GAAAGA@LB@ |:|||:|| :||| |:||||| :|||:|@LB@ UGAACGAA UCGU UUCGUGA UUUUUU@LB@3'-UUU...UACUU U UC A AAGCA...CAA-5'@LB@ | |@LB@ 58 28@LB@@LB@@LB@Energy -6.58 kcal/mol@LB@Hybridization Energy -19.7163 kcal/mol@LB@Unfolding Energy - mRNA 6.91297 kcal/mol@LB@Unfolding Energy - sRNA 6.22375 kcal/mol@LB@@LB@Position - mRNA 149 -- 175@LB@Position - sRNA 29 -- 57@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 36 -- 42@LB@ |
84 |
0.005596 |
0.2146 |
b4065 |
yjcE |
-5.39 |
0.265673 |
197 -- 210 |
9 -- 22 |
putative cation/proton antiporter |
|
_____________196____________211\n_____________|______________|\n5'-UAU...AGGGA____AU________UCUUC...UGC-3'\n______________ACGC__GGAAAUCU\n______________||:|__||||||||\n______________UGUG__CCUUUAGA\n3'-UUU...AGCAA____GU________CUACACAA-5'\n_____________|______________|\n_____________23_____________8\n |
203 -- 209 |
10 -- 16 |
-15.8377 kcal/mol |
2.89158 kcal/mol |
7.5588 kcal/mol |
196 211@LB@ | |@LB@5'-UAU...AGGGA AU UCUUC...UGC-3'@LB@ ACGC GGAAAUCU@LB@ ||:| ||||||||@LB@ UGUG CCUUUAGA@LB@3'-UUU...AGCAA GU CUACACAA-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -15.8377 kcal/mol@LB@Unfolding Energy - mRNA 2.89158 kcal/mol@LB@Unfolding Energy - sRNA 7.5588 kcal/mol@LB@@LB@Position - mRNA 197 -- 210@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 10 -- 16@LB@ |