181 |
0.0104 |
0.1919 |
b2106 |
rcnA |
-12.10 |
0.062308 |
133 -- 155 |
15 -- 50 |
membrane protein conferring nickel and cobalt resistance |
|
_____________132__________________________________156\n_____________|____________________________________|\n5'-UUC...CUACU_______A__A__A______________________GGGGA...ACU-3'\n______________GGGGGGU_GU_UC_GGUAC_____________UGGG\n______________:||:|||_||_:|_|||||_____________||||\n______________UCCUCCA_CA_GG_CCAUG_____________ACCC\n3'-UUU...CCGAU_______C__A__A_____UCGAUCGUAAAAU____AAUAC...UCG-5'\n_____________|____________________________________|\n_____________51___________________________________14\n |
133 -- 139 |
44 -- 50 |
-22.0891 kcal/mol |
5.35824 kcal/mol |
4.62773 kcal/mol |
132 156@LB@ | |@LB@5'-UUC...CUACU A A A GGGGA...ACU-3'@LB@ GGGGGGU GU UC GGUAC UGGG@LB@ :||:||| || :| ||||| ||||@LB@ UCCUCCA CA GG CCAUG ACCC@LB@3'-UUU...CCGAU C A A UCGAUCGUAAAAU AAUAC...UCG-5'@LB@ | |@LB@ 51 14@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -22.0891 kcal/mol@LB@Unfolding Energy - mRNA 5.35824 kcal/mol@LB@Unfolding Energy - sRNA 4.62773 kcal/mol@LB@@LB@Position - mRNA 133 -- 155@LB@Position - sRNA 15 -- 50@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 44 -- 50@LB@ |
182 |
0.01043 |
0.1919 |
b1235 |
rssB |
-12.59 |
0.048266 |
47 -- 57 |
25 -- 36 |
PcnB-degradosome interaction factor; response regulator |
|
_____________46___________58\n_____________|____________|\n5'-AAU...CGGCC____________AGUGG...CAA-3'\n______________GG_ACAGCUGGC\n______________||_||||||:||\n______________CC_UGUCGAUCG\n3'-UUU...AAGGA__A_________UAAAA...UCG-5'\n_____________|____________|\n_____________37___________24\n |
51 -- 57 |
25 -- 31 |
-17.7308 kcal/mol |
3.71782 kcal/mol |
1.42738 kcal/mol |
46 58@LB@ | |@LB@5'-AAU...CGGCC AGUGG...CAA-3'@LB@ GG ACAGCUGGC@LB@ || ||||||:||@LB@ CC UGUCGAUCG@LB@3'-UUU...AAGGA A UAAAA...UCG-5'@LB@ | |@LB@ 37 24@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -17.7308 kcal/mol@LB@Unfolding Energy - mRNA 3.71782 kcal/mol@LB@Unfolding Energy - sRNA 1.42738 kcal/mol@LB@@LB@Position - mRNA 47 -- 57@LB@Position - sRNA 25 -- 36@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 25 -- 31@LB@ |
183 |
0.01048 |
0.1919 |
b1250 |
kch |
-17.60 |
0.001460 |
228 -- 258 |
1 -- 33 |
voltage-gated potassium channel |
|
_____________227_______________________________259\n_____________|_________________________________|\n5'-AAC...AACAA_____AACAAA_________GACCC________ACGAC...UUA-3'\n______________ACAGC______UUUAUGGGU_______UUCGGC\n______________|||||______|||||||||_______|||:||\n______________UGUCG______AAAUACCCA_______AAGUCG\n3'-UUU...GACCA_____AUCGUA_________AUACAAA______-5'\n_____________|________________________________|\n_____________34_______________________________1\n |
241 -- 247 |
14 -- 20 |
-24.8286 kcal/mol |
5.73827 kcal/mol |
1.49313 kcal/mol |
227 259@LB@ | |@LB@5'-AAC...AACAA AACAAA GACCC ACGAC...UUA-3'@LB@ ACAGC UUUAUGGGU UUCGGC@LB@ ||||| ||||||||| |||:||@LB@ UGUCG AAAUACCCA AAGUCG@LB@3'-UUU...GACCA AUCGUA AUACAAA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -17.60 kcal/mol@LB@Hybridization Energy -24.8286 kcal/mol@LB@Unfolding Energy - mRNA 5.73827 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 228 -- 258@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 14 -- 20@LB@ |
184 |
0.01055 |
0.1919 |
b2175 |
mepS |
-11.10 |
0.102353 |
43 -- 84 |
9 -- 46 |
murein DD-endopeptidase space-maker hydrolase mutational suppressor of prc thermosensitivity outer membrane lipoprotein weak murein LD-carboxypeptidase |
|
_____________42____________________________________________85\n_____________|_____________________________________________|\n5'-CAA...GCCUC__C___AGAUUA____C_______A__UA________C_______CCACA...CAA-3'\n______________GG_GGU______UCCU___ACAGC_UA__AUUUUGUG_GUUA_GU\n______________||_|||______||||___|||||_||__|||||:||_||||_||\n______________CC_CCA______AGGA___UGUCG_AU__UAAAAUAC_CAAU_CA\n3'-UUU...UUCCU__A_____________CCA________CG________C____A__AAAAGUCG-5'\n_____________|_____________________________________________|\n_____________47____________________________________________8\n |
71 -- 77 |
17 -- 23 |
-25.0471 kcal/mol |
9.34223 kcal/mol |
4.60648 kcal/mol |
42 85@LB@ | |@LB@5'-CAA...GCCUC C AGAUUA C A UA C CCACA...CAA-3'@LB@ GG GGU UCCU ACAGC UA AUUUUGUG GUUA GU@LB@ || ||| |||| ||||| || |||||:|| |||| ||@LB@ CC CCA AGGA UGUCG AU UAAAAUAC CAAU CA@LB@3'-UUU...UUCCU A CCA CG C A AAAAGUCG-5'@LB@ | |@LB@ 47 8@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -25.0471 kcal/mol@LB@Unfolding Energy - mRNA 9.34223 kcal/mol@LB@Unfolding Energy - sRNA 4.60648 kcal/mol@LB@@LB@Position - mRNA 43 -- 84@LB@Position - sRNA 9 -- 46@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 17 -- 23@LB@ |
185 |
0.01059 |
0.1919 |
b3856 |
mobB |
-14.40 |
0.016564 |
123 -- 150 |
1 -- 31 |
molybdopterin-guanine dinucleotide biosynthesis protein B |
|
_____________122______________________________151\n_____________|________________________________|\n5'-GUG...CGUCU________GUC____C_____A__________GAUCA...CCA-3'\n______________GGCUGGCG____AUG_GGUUG____UUUCAGC\n______________:|||:||:____|||_||||:____|||||||\n______________UCGAUCGU____UAC_CCAAU____AAAGUCG\n3'-UUU...CCAUG________AAAA_________ACAA_______-5'\n_____________|_______________________________|\n_____________32______________________________1\n |
144 -- 150 |
1 -- 7 |
-26.2194 kcal/mol |
10.3308 kcal/mol |
1.48722 kcal/mol |
122 151@LB@ | |@LB@5'-GUG...CGUCU GUC C A GAUCA...CCA-3'@LB@ GGCUGGCG AUG GGUUG UUUCAGC@LB@ :|||:||: ||| ||||: |||||||@LB@ UCGAUCGU UAC CCAAU AAAGUCG@LB@3'-UUU...CCAUG AAAA ACAA -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -14.40 kcal/mol@LB@Hybridization Energy -26.2194 kcal/mol@LB@Unfolding Energy - mRNA 10.3308 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 123 -- 150@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 1 -- 7@LB@ |
186 |
0.01069 |
0.1919 |
b1614 |
ydgA |
-8.85 |
0.262719 |
182 -- 191 |
16 -- 25 |
DUF945 family protein |
|
_____________181________192\n_____________|__________|\n5'-ACA...GAUUU__________AUAAU...UCG-3'\n______________CAUUUUAUGG\n______________||||||||||\n______________GUAAAAUACC\n3'-UUU...CGAUC__________CAAUA...UCG-5'\n_____________|__________|\n_____________26_________15\n |
185 -- 191 |
16 -- 22 |
-11.3536 kcal/mol |
2.1555 kcal/mol |
0.346409 kcal/mol |
181 192@LB@ | |@LB@5'-ACA...GAUUU AUAAU...UCG-3'@LB@ CAUUUUAUGG@LB@ ||||||||||@LB@ GUAAAAUACC@LB@3'-UUU...CGAUC CAAUA...UCG-5'@LB@ | |@LB@ 26 15@LB@@LB@@LB@Energy -8.85 kcal/mol@LB@Hybridization Energy -11.3536 kcal/mol@LB@Unfolding Energy - mRNA 2.1555 kcal/mol@LB@Unfolding Energy - sRNA 0.346409 kcal/mol@LB@@LB@Position - mRNA 182 -- 191@LB@Position - sRNA 16 -- 25@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 16 -- 22@LB@ |
187 |
0.01074 |
0.1919 |
b2536 |
hcaT |
-7.74 |
0.383266 |
275 -- 291 |
25 -- 41 |
putative 3-phenylpropionic transporter |
|
_____________274_______________292\n_____________|_________________|\n5'-UCG...CUACC_______A___U_____UUAAA...GGA-3'\n______________UUUCUGG_GCG_CUGGC\n______________||:||||_:|:_||:||\n______________AAGGACC_UGU_GAUCG\n3'-UUU...CCACC_______A___C_____UAAAA...UCG-5'\n_____________|_________________|\n_____________42________________24\n |
275 -- 281 |
35 -- 41 |
-17.8602 kcal/mol |
5.56231 kcal/mol |
4.55428 kcal/mol |
274 292@LB@ | |@LB@5'-UCG...CUACC A U UUAAA...GGA-3'@LB@ UUUCUGG GCG CUGGC@LB@ ||:|||| :|: ||:||@LB@ AAGGACC UGU GAUCG@LB@3'-UUU...CCACC A C UAAAA...UCG-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -17.8602 kcal/mol@LB@Unfolding Energy - mRNA 5.56231 kcal/mol@LB@Unfolding Energy - sRNA 4.55428 kcal/mol@LB@@LB@Position - mRNA 275 -- 291@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 35 -- 41@LB@ |
188 |
0.01085 |
0.1919 |
b1878 |
flhE |
-11.23 |
0.096033 |
252 -- 283 |
16 -- 51 |
proton seal during flagellar secretion |
|
_____________251__________________________________284\n_____________|____________________________________|\n5'-CGU...CCGCC__________A__G___CA____A____GUG_____AAUUA...AUC-3'\n______________GGGGAGG_GG__U_UGG___GGC_AGUA___UA_GG\n______________::|||||_||__:_|||___:||_||:|___||_||\n______________UUCCUCC_CC__G_ACC___UCG_UCGU___AU_CC\n3'-UUU...UCCGA_______A__AA_G___AUG___A____AAA__A__CAAUA...UCG-5'\n_____________|____________________________________|\n_____________52___________________________________15\n |
252 -- 258 |
45 -- 51 |
-25.2373 kcal/mol |
9.34808 kcal/mol |
4.65624 kcal/mol |
251 284@LB@ | |@LB@5'-CGU...CCGCC A G CA A GUG AAUUA...AUC-3'@LB@ GGGGAGG GG U UGG GGC AGUA UA GG@LB@ ::||||| || : ||| :|| ||:| || ||@LB@ UUCCUCC CC G ACC UCG UCGU AU CC@LB@3'-UUU...UCCGA A AA G AUG A AAA A CAAUA...UCG-5'@LB@ | |@LB@ 52 15@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -25.2373 kcal/mol@LB@Unfolding Energy - mRNA 9.34808 kcal/mol@LB@Unfolding Energy - sRNA 4.65624 kcal/mol@LB@@LB@Position - mRNA 252 -- 283@LB@Position - sRNA 16 -- 51@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 45 -- 51@LB@ |
189 |
0.01085 |
0.1919 |
b3606 |
trmL |
-8.64 |
0.283903 |
120 -- 126 |
63 -- 69 |
tRNA Leu mC34 mU34 2'-O-methyltransferase SAM-dependent |
|
_____________119_____127\n_____________|_______|\n5'-UAG...CCUCC_______GGGCC...AAC-3'\n______________GGGGAGA\n______________:||||||\n______________UCCCUCU\n3'-UUU...CACAU_______AAUGU...UCG-5'\n_____________|_______|\n_____________70______62\n |
120 -- 126 |
63 -- 69 |
-10.8913 kcal/mol |
1.31422 kcal/mol |
0.939295 kcal/mol |
119 127@LB@ | |@LB@5'-UAG...CCUCC GGGCC...AAC-3'@LB@ GGGGAGA@LB@ :||||||@LB@ UCCCUCU@LB@3'-UUU...CACAU AAUGU...UCG-5'@LB@ | |@LB@ 70 62@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -10.8913 kcal/mol@LB@Unfolding Energy - mRNA 1.31422 kcal/mol@LB@Unfolding Energy - sRNA 0.939295 kcal/mol@LB@@LB@Position - mRNA 120 -- 126@LB@Position - sRNA 63 -- 69@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 63 -- 69@LB@ |
190 |
0.0109 |
0.1919 |
b2749 |
ygbE |
-11.00 |
0.107048 |
99 -- 107 |
29 -- 37 |
DUF3561 family inner membrane protein |
|
_____________98________108\n_____________|_________|\n5'-UGC...AAAUU_________AAUUA...UCU-3'\n______________UGGUACAGC\n______________|||||||||\n______________ACCAUGUCG\n3'-UUU...CAAGG_________AUCGU...UCG-5'\n_____________|_________|\n_____________38________28\n |
101 -- 107 |
29 -- 35 |
-15.5774 kcal/mol |
2.20256 kcal/mol |
2.37218 kcal/mol |
98 108@LB@ | |@LB@5'-UGC...AAAUU AAUUA...UCU-3'@LB@ UGGUACAGC@LB@ |||||||||@LB@ ACCAUGUCG@LB@3'-UUU...CAAGG AUCGU...UCG-5'@LB@ | |@LB@ 38 28@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -15.5774 kcal/mol@LB@Unfolding Energy - mRNA 2.20256 kcal/mol@LB@Unfolding Energy - sRNA 2.37218 kcal/mol@LB@@LB@Position - mRNA 99 -- 107@LB@Position - sRNA 29 -- 37@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 29 -- 35@LB@ |