78 |
0.004685 |
0.1935 |
b3905 |
rhaS |
-7.96 |
0.061746 |
70 -- 86 |
26 -- 40 |
transcriptional activator of rhaBAD and rhaT |
|
_____________69________________87\n_____________|_________________|\n5'-UGG...UCACC______CCU________ACGCU...AUG-3'\n______________GCAUUU___GAAAAUUC\n______________|||:||___:|||||||\n______________CGUGAA___UUUUUAAG\n3'-UUU...UUCUU______U__________CAAUG...CAA-5'\n_____________|_________________|\n_____________41________________25\n |
80 -- 86 |
26 -- 32 |
-11.6625 kcal/mol |
2.05222 kcal/mol |
1.64811 kcal/mol |
69 87@LB@ | |@LB@5'-UGG...UCACC CCU ACGCU...AUG-3'@LB@ GCAUUU GAAAAUUC@LB@ |||:|| :|||||||@LB@ CGUGAA UUUUUAAG@LB@3'-UUU...UUCUU U CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -7.96 kcal/mol@LB@Hybridization Energy -11.6625 kcal/mol@LB@Unfolding Energy - mRNA 2.05222 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 70 -- 86@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 26 -- 32@LB@ |
70 |
0.003574 |
0.1645 |
b0145 |
dksA |
-6.64 |
0.135564 |
191 -- 197 |
39 -- 45 |
transcriptional regulator of rRNA transcription; DnaK suppressor protein |
|
_____________190_____198\n_____________|_______|\n5'-AAU...UUAAG_______AACAU...AUG-3'\n______________GAGAAGC\n______________:||||||\n______________UUCUUCG\n3'-UUU...AUUCG_______UGAAU...CAA-5'\n_____________|_______|\n_____________46______38\n |
191 -- 197 |
39 -- 45 |
-7.63285 kcal/mol |
0.475666 kcal/mol |
0.514773 kcal/mol |
190 198@LB@ | |@LB@5'-AAU...UUAAG AACAU...AUG-3'@LB@ GAGAAGC@LB@ :||||||@LB@ UUCUUCG@LB@3'-UUU...AUUCG UGAAU...CAA-5'@LB@ | |@LB@ 46 38@LB@@LB@@LB@Energy -6.64 kcal/mol@LB@Hybridization Energy -7.63285 kcal/mol@LB@Unfolding Energy - mRNA 0.475666 kcal/mol@LB@Unfolding Energy - sRNA 0.514773 kcal/mol@LB@@LB@Position - mRNA 191 -- 197@LB@Position - sRNA 39 -- 45@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 39 -- 45@LB@ |
95 |
0.007016 |
0.2379 |
b0464 |
acrR |
-8.52 |
0.043413 |
219 -- 228 |
37 -- 46 |
transcriptional repressor |
|
_____________218________229\n_____________|__________|\n5'-AAG...CCAAA__________AAGAA...CGC-3'\n______________CAAGAAGCGC\n______________||||||||:|\n______________GUUCUUCGUG\n3'-UUU...AAUUC__________AAUUU...CAA-5'\n_____________|__________|\n_____________47_________36\n |
222 -- 228 |
37 -- 43 |
-15.2794 kcal/mol |
1.54243 kcal/mol |
5.21654 kcal/mol |
218 229@LB@ | |@LB@5'-AAG...CCAAA AAGAA...CGC-3'@LB@ CAAGAAGCGC@LB@ ||||||||:|@LB@ GUUCUUCGUG@LB@3'-UUU...AAUUC AAUUU...CAA-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -8.52 kcal/mol@LB@Hybridization Energy -15.2794 kcal/mol@LB@Unfolding Energy - mRNA 1.54243 kcal/mol@LB@Unfolding Energy - sRNA 5.21654 kcal/mol@LB@@LB@Position - mRNA 219 -- 228@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 37 -- 43@LB@ |
4 |
1.769e-05 |
0.01424 |
b2105 |
rcnR |
-7.88 |
0.065143 |
12 -- 26 |
36 -- 49 |
transcriptional repressor of rcnA |
|
_____________11______________27\n_____________|_______________|\n5'-UGA...GCACC________U______GGGGA...ACG-3'\n______________AAGUAAGA_GGCGCU\n______________|||:||||_:||:||\n______________UUCGUUCU_UCGUGA\n3'-UUU...ACGAA_______________AUUUU...CAA-5'\n_____________|_______________|\n_____________50______________35\n |
13 -- 19 |
42 -- 48 |
-15.6635 kcal/mol |
1.75127 kcal/mol |
6.03645 kcal/mol |
11 27@LB@ | |@LB@5'-UGA...GCACC U GGGGA...ACG-3'@LB@ AAGUAAGA GGCGCU@LB@ |||:|||| :||:||@LB@ UUCGUUCU UCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -15.6635 kcal/mol@LB@Unfolding Energy - mRNA 1.75127 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 12 -- 26@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 42 -- 48@LB@ |
45 |
0.001912 |
0.1369 |
b0080 |
cra |
-5.81 |
0.213706 |
183 -- 197 |
38 -- 52 |
transcriptional repressor-activator for carbon metabolism |
|
_____________182_____________198\n_____________|_______________|\n5'-GGC...UACAU____C__________AUUGU...AAA-3'\n______________UUUA_GCAAGGGGCA\n______________:|||_|||||::|||\n______________GAAU_CGUUCUUCGU\n3'-UUU...UGAAC____U__________GAAUU...CAA-5'\n_____________|_______________|\n_____________53______________37\n |
191 -- 197 |
38 -- 44 |
-16.0644 kcal/mol |
4.16124 kcal/mol |
6.09169 kcal/mol |
182 198@LB@ | |@LB@5'-GGC...UACAU C AUUGU...AAA-3'@LB@ UUUA GCAAGGGGCA@LB@ :||| |||||::|||@LB@ GAAU CGUUCUUCGU@LB@3'-UUU...UGAAC U GAAUU...CAA-5'@LB@ | |@LB@ 53 37@LB@@LB@@LB@Energy -5.81 kcal/mol@LB@Hybridization Energy -16.0644 kcal/mol@LB@Unfolding Energy - mRNA 4.16124 kcal/mol@LB@Unfolding Energy - sRNA 6.09169 kcal/mol@LB@@LB@Position - mRNA 183 -- 197@LB@Position - sRNA 38 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 38 -- 44@LB@ |
102 |
0.008217 |
0.2595 |
b4220 |
tamA |
-7.38 |
0.088103 |
40 -- 47 |
39 -- 46 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________39_______48\n_____________|________|\n5'-CGC...UGUAA________GUAUU...GAC-3'\n______________CAAGAGGC\n______________|||||:||\n______________GUUCUUCG\n3'-UUU...AAUUC________UGAAU...CAA-5'\n_____________|________|\n_____________47_______38\n |
41 -- 47 |
39 -- 45 |
-10.989 kcal/mol |
0.983473 kcal/mol |
2.62555 kcal/mol |
39 48@LB@ | |@LB@5'-CGC...UGUAA GUAUU...GAC-3'@LB@ CAAGAGGC@LB@ |||||:||@LB@ GUUCUUCG@LB@3'-UUU...AAUUC UGAAU...CAA-5'@LB@ | |@LB@ 47 38@LB@@LB@@LB@Energy -7.38 kcal/mol@LB@Hybridization Energy -10.989 kcal/mol@LB@Unfolding Energy - mRNA 0.983473 kcal/mol@LB@Unfolding Energy - sRNA 2.62555 kcal/mol@LB@@LB@Position - mRNA 40 -- 47@LB@Position - sRNA 39 -- 46@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 39 -- 45@LB@ |
147 |
0.01475 |
0.3231 |
b0084 |
ftsI |
-4.75 |
0.360226 |
157 -- 172 |
24 -- 39 |
transpeptidase involved in septal peptidoglycan synthesis; penicillin-binding protein 3 |
|
_____________156_______________173\n_____________|_________________|\n5'-GUU...UCCGU___A________A____AGUGC...UGG-3'\n______________CAC__AGAAAAU_UCGU\n______________|||__|:|||||_||||\n______________GUG__UUUUUUA_AGCA\n3'-UUU...UCUUC___AA____________AUGUG...CAA-5'\n_____________|_________________|\n_____________40________________23\n |
161 -- 167 |
28 -- 34 |
-7.76704 kcal/mol |
1.36905 kcal/mol |
1.64726 kcal/mol |
156 173@LB@ | |@LB@5'-GUU...UCCGU A A AGUGC...UGG-3'@LB@ CAC AGAAAAU UCGU@LB@ ||| |:||||| ||||@LB@ GUG UUUUUUA AGCA@LB@3'-UUU...UCUUC AA AUGUG...CAA-5'@LB@ | |@LB@ 40 23@LB@@LB@@LB@Energy -4.75 kcal/mol@LB@Hybridization Energy -7.76704 kcal/mol@LB@Unfolding Energy - mRNA 1.36905 kcal/mol@LB@Unfolding Energy - sRNA 1.64726 kcal/mol@LB@@LB@Position - mRNA 157 -- 172@LB@Position - sRNA 24 -- 39@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 28 -- 34@LB@ |
64 |
0.003339 |
0.1645 |
b3166 |
truB |
-7.27 |
0.093914 |
187 -- 199 |
36 -- 48 |
tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
|
_____________186___________200\n_____________|_____________|\n5'-GGC...ACGAC_________G___AAUGA...AAC-3'\n______________AGCAAGGAG_ACU\n______________||||||:||_|||\n______________UCGUUCUUC_UGA\n3'-UUU...CGAAU_________G___AUUUU...CAA-5'\n_____________|_____________|\n_____________49____________35\n |
189 -- 195 |
40 -- 46 |
-16.8762 kcal/mol |
3.76451 kcal/mol |
5.83861 kcal/mol |
186 200@LB@ | |@LB@5'-GGC...ACGAC G AAUGA...AAC-3'@LB@ AGCAAGGAG ACU@LB@ ||||||:|| |||@LB@ UCGUUCUUC UGA@LB@3'-UUU...CGAAU G AUUUU...CAA-5'@LB@ | |@LB@ 49 35@LB@@LB@@LB@Energy -7.27 kcal/mol@LB@Hybridization Energy -16.8762 kcal/mol@LB@Unfolding Energy - mRNA 3.76451 kcal/mol@LB@Unfolding Energy - sRNA 5.83861 kcal/mol@LB@@LB@Position - mRNA 187 -- 199@LB@Position - sRNA 36 -- 48@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 40 -- 46@LB@ |
10 |
0.0001005 |
0.03239 |
b1260 |
trpA |
-10.26 |
0.013526 |
184 -- 203 |
5 -- 22 |
tryptophan synthase alpha subunit |
|
_____________183__________________204\n_____________|____________________|\n5'-GCC...UGAAA____GAG_____________GAACG...CAU-3'\n______________GCAC___GGGAAAUCUGAUG\n______________:|||___:||||||||||||\n______________UGUG___UCCUUUAGACUAC\n3'-UUU...AGCAA____G_______________ACAA-5'\n_____________|____________________|\n_____________23___________________4\n |
192 -- 198 |
10 -- 16 |
-23.1901 kcal/mol |
5.35202 kcal/mol |
7.57357 kcal/mol |
183 204@LB@ | |@LB@5'-GCC...UGAAA GAG GAACG...CAU-3'@LB@ GCAC GGGAAAUCUGAUG@LB@ :||| :||||||||||||@LB@ UGUG UCCUUUAGACUAC@LB@3'-UUU...AGCAA G ACAA-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -23.1901 kcal/mol@LB@Unfolding Energy - mRNA 5.35202 kcal/mol@LB@Unfolding Energy - sRNA 7.57357 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 10 -- 16@LB@ |
75 |
0.004391 |
0.1886 |
b3708 |
tnaA |
-6.02 |
0.191179 |
273 -- 300 |
28 -- 53 |
tryptophanase/L-cysteine desulfhydrase PLP-dependent |
|
_____________272_________________________300\n_____________|___________________________|\n5'-ACC...CUCGC_____UC__G________A___UU____-3'\n______________GCUUA__GU_AAGAGGCA_UUA__AAAU\n______________|||||__|:_||||:|||_|||__||||\n______________CGAAU__CG_UUCUUCGU_AAU__UUUA\n3'-UUU...UUGAA_____U____________G___UU____AGCAA...CAA-5'\n_____________|____________________________|\n_____________54___________________________27\n |
284 -- 290 |
38 -- 44 |
-17.9242 kcal/mol |
5.66853 kcal/mol |
6.23468 kcal/mol |
272 300@LB@ | |@LB@5'-ACC...CUCGC UC G A UU -3'@LB@ GCUUA GU AAGAGGCA UUA AAAU@LB@ ||||| |: ||||:||| ||| ||||@LB@ CGAAU CG UUCUUCGU AAU UUUA@LB@3'-UUU...UUGAA U G UU AGCAA...CAA-5'@LB@ | |@LB@ 54 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -17.9242 kcal/mol@LB@Unfolding Energy - mRNA 5.66853 kcal/mol@LB@Unfolding Energy - sRNA 6.23468 kcal/mol@LB@@LB@Position - mRNA 273 -- 300@LB@Position - sRNA 28 -- 53@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 38 -- 44@LB@ |