76 |
0.002251 |
0.09621 |
b0020 |
nhaR |
-13.73 |
0.025158 |
90 -- 112 |
25 -- 46 |
transcriptional activator of nhaA |
|
_____________89______________________113\n_____________|_______________________|\n5'-AUC...UCUUC__C___AA____A__________UACGC...CUC-3'\n______________GG_GGU__UUGG_UACAGCUGGU\n______________||_|||__:|||_|||||||:|:\n______________CC_CCA__GACC_AUGUCGAUCG\n3'-UUU...UUCCU__A___AG_______________UAAAA...UCG-5'\n_____________|_______________________|\n_____________47______________________24\n |
106 -- 112 |
25 -- 31 |
-27.2836 kcal/mol |
8.99906 kcal/mol |
4.55673 kcal/mol |
89 113@LB@ | |@LB@5'-AUC...UCUUC C AA A UACGC...CUC-3'@LB@ GG GGU UUGG UACAGCUGGU@LB@ || ||| :||| |||||||:|:@LB@ CC CCA GACC AUGUCGAUCG@LB@3'-UUU...UUCCU A AG UAAAA...UCG-5'@LB@ | |@LB@ 47 24@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -27.2836 kcal/mol@LB@Unfolding Energy - mRNA 8.99906 kcal/mol@LB@Unfolding Energy - sRNA 4.55673 kcal/mol@LB@@LB@Position - mRNA 90 -- 112@LB@Position - sRNA 25 -- 46@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 25 -- 31@LB@ |
61 |
0.001594 |
0.08781 |
b1905 |
ftnA |
-13.68 |
0.025904 |
280 -- 298 |
27 -- 44 |
ferritin iron storage protein (cytoplasmic) |
|
_____________279_________________299\n_____________|___________________|\n5'-CAU...GCAAA__A_CG_____________UC-3'\n______________UG_G__CCUGGUGCAGCUA\n______________||_|__||||||:||||||\n______________AC_C__GGACCAUGUCGAU\n3'-UUU...CCUCC____AA_____________CGUAA...UCG-5'\n_____________|___________________|\n_____________45__________________26\n |
292 -- 298 |
27 -- 33 |
-25.294 kcal/mol |
7.30746 kcal/mol |
4.30747 kcal/mol |
279 299@LB@ | |@LB@5'-CAU...GCAAA A CG UC-3'@LB@ UG G CCUGGUGCAGCUA@LB@ || | ||||||:||||||@LB@ AC C GGACCAUGUCGAU@LB@3'-UUU...CCUCC AA CGUAA...UCG-5'@LB@ | |@LB@ 45 26@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -25.294 kcal/mol@LB@Unfolding Energy - mRNA 7.30746 kcal/mol@LB@Unfolding Energy - sRNA 4.30747 kcal/mol@LB@@LB@Position - mRNA 280 -- 298@LB@Position - sRNA 27 -- 44@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 27 -- 33@LB@ |
139 |
0.00635 |
0.1535 |
b0800 |
ybiB |
-9.74 |
0.186276 |
120 -- 129 |
27 -- 36 |
putative family 3 glycosyltransferase |
|
_____________119________130\n_____________|__________|\n5'-GCC...CUGAA__________AAAAG...UCA-3'\n______________GGUAUAGUUA\n______________||||:||:||\n______________CCAUGUCGAU\n3'-UUU...AAGGA__________CGUAA...UCG-5'\n_____________|__________|\n_____________37_________26\n |
123 -- 129 |
27 -- 33 |
-12.0711 kcal/mol |
1.15693 kcal/mol |
1.17709 kcal/mol |
119 130@LB@ | |@LB@5'-GCC...CUGAA AAAAG...UCA-3'@LB@ GGUAUAGUUA@LB@ ||||:||:||@LB@ CCAUGUCGAU@LB@3'-UUU...AAGGA CGUAA...UCG-5'@LB@ | |@LB@ 37 26@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -12.0711 kcal/mol@LB@Unfolding Energy - mRNA 1.15693 kcal/mol@LB@Unfolding Energy - sRNA 1.17709 kcal/mol@LB@@LB@Position - mRNA 120 -- 129@LB@Position - sRNA 27 -- 36@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 27 -- 33@LB@ |
200 |
0.01185 |
0.1975 |
b0025 |
ribF |
-6.09 |
0.598433 |
35 -- 41 |
28 -- 34 |
bifunctional riboflavin kinase/FAD synthetase |
|
_____________34______42\n_____________|_______|\n5'-UGG...GUGAA_______UUUCC...GCG-3'\n______________UACAGCU\n______________|||||||\n______________AUGUCGA\n3'-UUU...GGACC_______UCGUA...UCG-5'\n_____________|_______|\n_____________35______27\n |
35 -- 41 |
28 -- 34 |
-8.9914 kcal/mol |
1.72675 kcal/mol |
1.17027 kcal/mol |
34 42@LB@ | |@LB@5'-UGG...GUGAA UUUCC...GCG-3'@LB@ UACAGCU@LB@ |||||||@LB@ AUGUCGA@LB@3'-UUU...GGACC UCGUA...UCG-5'@LB@ | |@LB@ 35 27@LB@@LB@@LB@Energy -6.09 kcal/mol@LB@Hybridization Energy -8.9914 kcal/mol@LB@Unfolding Energy - mRNA 1.72675 kcal/mol@LB@Unfolding Energy - sRNA 1.17027 kcal/mol@LB@@LB@Position - mRNA 35 -- 41@LB@Position - sRNA 28 -- 34@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 28 -- 34@LB@ |
10 |
2.916e-05 |
0.0098 |
b1890 |
motA |
-14.10 |
0.019983 |
224 -- 242 |
28 -- 46 |
proton conductor component of flagella motor |
|
_____________223_________________243\n_____________|___________________|\n5'-GAC...UACCU___U_____C_________UUCGG...AAC-3'\n______________GGU_GUUCU_GGUACAGUU\n______________|||_||||:_|||||||:|\n______________CCA_CAAGG_CCAUGUCGA\n3'-UUU...UUCCU___C_____A_________UCGUA...UCG-5'\n_____________|___________________|\n_____________47__________________27\n |
236 -- 242 |
28 -- 34 |
-23.9025 kcal/mol |
5.49413 kcal/mol |
4.3041 kcal/mol |
223 243@LB@ | |@LB@5'-GAC...UACCU U C UUCGG...AAC-3'@LB@ GGU GUUCU GGUACAGUU@LB@ ||| ||||: |||||||:|@LB@ CCA CAAGG CCAUGUCGA@LB@3'-UUU...UUCCU C A UCGUA...UCG-5'@LB@ | |@LB@ 47 27@LB@@LB@@LB@Energy -14.10 kcal/mol@LB@Hybridization Energy -23.9025 kcal/mol@LB@Unfolding Energy - mRNA 5.49413 kcal/mol@LB@Unfolding Energy - sRNA 4.3041 kcal/mol@LB@@LB@Position - mRNA 224 -- 242@LB@Position - sRNA 28 -- 46@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 28 -- 34@LB@ |
8 |
1.749e-05 |
0.007346 |
b3294 |
rplQ |
-17.07 |
0.002316 |
5 -- 20 |
29 -- 46 |
50S ribosomal subunit protein L17 |
|
_____________4__________________21\n_____________|__________________|\n_______5'-UAUC____A_____________GUACC...UCA-3'\n______________GGUG___UCUGGUACAGC\n______________||||___:||||||||||\n______________CCAC___GGACCAUGUCG\n3'-UUU...UUCCU____CAA___________AUCGU...UCG-5'\n_____________|__________________|\n_____________47_________________28\n |
14 -- 20 |
29 -- 35 |
-24.8218 kcal/mol |
3.44934 kcal/mol |
4.30059 kcal/mol |
4 21@LB@ | |@LB@ 5'-UAUC A GUACC...UCA-3'@LB@ GGUG UCUGGUACAGC@LB@ |||| :||||||||||@LB@ CCAC GGACCAUGUCG@LB@3'-UUU...UUCCU CAA AUCGU...UCG-5'@LB@ | |@LB@ 47 28@LB@@LB@@LB@Energy -17.07 kcal/mol@LB@Hybridization Energy -24.8218 kcal/mol@LB@Unfolding Energy - mRNA 3.44934 kcal/mol@LB@Unfolding Energy - sRNA 4.30059 kcal/mol@LB@@LB@Position - mRNA 5 -- 20@LB@Position - sRNA 29 -- 46@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 29 -- 35@LB@ |
154 |
0.007726 |
0.1686 |
b4203 |
rplI |
-9.34 |
0.218324 |
285 -- 297 |
29 -- 41 |
50S ribosomal subunit protein L9 |
|
_____________284___________298\n_____________|_____________|\n5'-AAA...GUAAC__________C__AGG-3'\n______________UUCCUGGUAC_GC\n______________||||||||||_||\n______________AAGGACCAUG_CG\n3'-UUU...CCACC__________U__AUCGU...UCG-5'\n_____________|_____________|\n_____________42____________28\n |
288 -- 294 |
32 -- 38 |
-19.8737 kcal/mol |
6.23655 kcal/mol |
4.29727 kcal/mol |
284 298@LB@ | |@LB@5'-AAA...GUAAC C AGG-3'@LB@ UUCCUGGUAC GC@LB@ |||||||||| ||@LB@ AAGGACCAUG CG@LB@3'-UUU...CCACC U AUCGU...UCG-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -19.8737 kcal/mol@LB@Unfolding Energy - mRNA 6.23655 kcal/mol@LB@Unfolding Energy - sRNA 4.29727 kcal/mol@LB@@LB@Position - mRNA 285 -- 297@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 32 -- 38@LB@ |
92 |
0.00311 |
0.1126 |
b1042 |
csgA |
-13.02 |
0.037954 |
257 -- 281 |
29 -- 49 |
curlin subunit amyloid curli fibers cryptic |
|
_____________256_______________________282\n_____________|_________________________|\n5'-CAA...GCUCU__C_____UU______CA_______GGCGG...GUG-3'\n______________GG_AGGUG__GUUCCU__GUACGGC\n______________||_|||||__||||||__||||:||\n______________CC_UCCAC__CAAGGA__CAUGUCG\n3'-UUU...CGAUU________________C________AUCGU...UCG-5'\n_____________|_________________________|\n_____________50________________________28\n |
275 -- 281 |
29 -- 35 |
-27.0821 kcal/mol |
9.75964 kcal/mol |
4.30143 kcal/mol |
256 282@LB@ | |@LB@5'-CAA...GCUCU C UU CA GGCGG...GUG-3'@LB@ GG AGGUG GUUCCU GUACGGC@LB@ || ||||| |||||| ||||:||@LB@ CC UCCAC CAAGGA CAUGUCG@LB@3'-UUU...CGAUU C AUCGU...UCG-5'@LB@ | |@LB@ 50 28@LB@@LB@@LB@Energy -13.02 kcal/mol@LB@Hybridization Energy -27.0821 kcal/mol@LB@Unfolding Energy - mRNA 9.75964 kcal/mol@LB@Unfolding Energy - sRNA 4.30143 kcal/mol@LB@@LB@Position - mRNA 257 -- 281@LB@Position - sRNA 29 -- 49@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 29 -- 35@LB@ |
190 |
0.0109 |
0.1919 |
b2749 |
ygbE |
-11.00 |
0.107048 |
99 -- 107 |
29 -- 37 |
DUF3561 family inner membrane protein |
|
_____________98________108\n_____________|_________|\n5'-UGC...AAAUU_________AAUUA...UCU-3'\n______________UGGUACAGC\n______________|||||||||\n______________ACCAUGUCG\n3'-UUU...CAAGG_________AUCGU...UCG-5'\n_____________|_________|\n_____________38________28\n |
101 -- 107 |
29 -- 35 |
-15.5774 kcal/mol |
2.20256 kcal/mol |
2.37218 kcal/mol |
98 108@LB@ | |@LB@5'-UGC...AAAUU AAUUA...UCU-3'@LB@ UGGUACAGC@LB@ |||||||||@LB@ ACCAUGUCG@LB@3'-UUU...CAAGG AUCGU...UCG-5'@LB@ | |@LB@ 38 28@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -15.5774 kcal/mol@LB@Unfolding Energy - mRNA 2.20256 kcal/mol@LB@Unfolding Energy - sRNA 2.37218 kcal/mol@LB@@LB@Position - mRNA 99 -- 107@LB@Position - sRNA 29 -- 37@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 29 -- 35@LB@ |
115 |
0.004814 |
0.1404 |
b2743 |
pcm |
-10.63 |
0.126788 |
157 -- 183 |
29 -- 48 |
L-isoaspartate protein carboxylmethyltransferase type II |
|
_____________156_________________________184\n_____________|___________________________|\n5'-AUC...CGCAA__U_______CAGA_____UAA_____GUGGG...AAA-3'\n______________GA_GUGGUUU____CUGGU___ACAGC\n______________||_||||||:____|||||___|||||\n______________CU_CACCAAG____GACCA___UGUCG\n3'-UUU...GAUUC__C________________________AUCGU...UCG-5'\n_____________|___________________________|\n_____________49__________________________28\n |
160 -- 166 |
39 -- 45 |
-22.1612 kcal/mol |
7.2267 kcal/mol |
4.30129 kcal/mol |
156 184@LB@ | |@LB@5'-AUC...CGCAA U CAGA UAA GUGGG...AAA-3'@LB@ GA GUGGUUU CUGGU ACAGC@LB@ || ||||||: ||||| |||||@LB@ CU CACCAAG GACCA UGUCG@LB@3'-UUU...GAUUC C AUCGU...UCG-5'@LB@ | |@LB@ 49 28@LB@@LB@@LB@Energy -10.63 kcal/mol@LB@Hybridization Energy -22.1612 kcal/mol@LB@Unfolding Energy - mRNA 7.2267 kcal/mol@LB@Unfolding Energy - sRNA 4.30129 kcal/mol@LB@@LB@Position - mRNA 157 -- 183@LB@Position - sRNA 29 -- 48@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 39 -- 45@LB@ |