| 191 |
0.01094 |
0.1919 |
b3554 |
yiaF |
-11.44 |
0.087025 |
256 -- 281 |
6 -- 37 |
barrier effect co-colonization resistance factor; DUF3053 family lipoprotein |
|
_____________255______________________________282\n_____________|________________________________|\n5'-AAU...AUUAA_____________CUGA_______________GAUAA...AGC-3'\n______________UGGU__AGUUAGC_____GUGGGU___GUUUU\n______________||||__||:||||_____:|||||___|||||\n______________ACCA__UCGAUCG_____UACCCA___CAAAA\n3'-UUU...CAAGG____UG_______UAAAA______AUA_____AGUCG-5'\n_____________|________________________________|\n_____________38_______________________________5\n |
260 -- 266 |
25 -- 31 |
-21.639 kcal/mol |
7.5014 kcal/mol |
2.70019 kcal/mol |
255 282@LB@ | |@LB@5'-AAU...AUUAA CUGA GAUAA...AGC-3'@LB@ UGGU AGUUAGC GUGGGU GUUUU@LB@ |||| ||:|||| :||||| |||||@LB@ ACCA UCGAUCG UACCCA CAAAA@LB@3'-UUU...CAAGG UG UAAAA AUA AGUCG-5'@LB@ | |@LB@ 38 5@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -21.639 kcal/mol@LB@Unfolding Energy - mRNA 7.5014 kcal/mol@LB@Unfolding Energy - sRNA 2.70019 kcal/mol@LB@@LB@Position - mRNA 256 -- 281@LB@Position - sRNA 6 -- 37@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 92 |
0.00311 |
0.1126 |
b1042 |
csgA |
-13.02 |
0.037954 |
257 -- 281 |
29 -- 49 |
curlin subunit amyloid curli fibers cryptic |
|
_____________256_______________________282\n_____________|_________________________|\n5'-CAA...GCUCU__C_____UU______CA_______GGCGG...GUG-3'\n______________GG_AGGUG__GUUCCU__GUACGGC\n______________||_|||||__||||||__||||:||\n______________CC_UCCAC__CAAGGA__CAUGUCG\n3'-UUU...CGAUU________________C________AUCGU...UCG-5'\n_____________|_________________________|\n_____________50________________________28\n |
275 -- 281 |
29 -- 35 |
-27.0821 kcal/mol |
9.75964 kcal/mol |
4.30143 kcal/mol |
256 282@LB@ | |@LB@5'-CAA...GCUCU C UU CA GGCGG...GUG-3'@LB@ GG AGGUG GUUCCU GUACGGC@LB@ || ||||| |||||| ||||:||@LB@ CC UCCAC CAAGGA CAUGUCG@LB@3'-UUU...CGAUU C AUCGU...UCG-5'@LB@ | |@LB@ 50 28@LB@@LB@@LB@Energy -13.02 kcal/mol@LB@Hybridization Energy -27.0821 kcal/mol@LB@Unfolding Energy - mRNA 9.75964 kcal/mol@LB@Unfolding Energy - sRNA 4.30143 kcal/mol@LB@@LB@Position - mRNA 257 -- 281@LB@Position - sRNA 29 -- 49@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 135 |
0.005891 |
0.146 |
b3009 |
yghB |
-12.71 |
0.045213 |
257 -- 299 |
7 -- 46 |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
_____________256_________________________________________300\n_____________|___________________________________________|\n5'-UCU...GCGCU__C__A____CA___U_________GUUUACUUU__C______G-3'\n______________GG_GG_UCCU__UAU_GUUAGCGUU_________GU_AUGUUU\n______________||_||_||||__||:_|:||||:||_________||_||||||\n______________CC_CC_AGGA__AUG_CGAUCGUAA_________CA_UACAAA\n3'-UUU...UUCCU__A__A____CC___U_________AAUACC_____A______AAGUCG-5'\n_____________|___________________________________________|\n_____________47__________________________________________6\n |
275 -- 281 |
22 -- 28 |
-27.0814 kcal/mol |
9.76724 kcal/mol |
4.60844 kcal/mol |
256 300@LB@ | |@LB@5'-UCU...GCGCU C A CA U GUUUACUUU C G-3'@LB@ GG GG UCCU UAU GUUAGCGUU GU AUGUUU@LB@ || || |||| ||: |:||||:|| || ||||||@LB@ CC CC AGGA AUG CGAUCGUAA CA UACAAA@LB@3'-UUU...UUCCU A A CC U AAUACC A AAGUCG-5'@LB@ | |@LB@ 47 6@LB@@LB@@LB@Energy -12.71 kcal/mol@LB@Hybridization Energy -27.0814 kcal/mol@LB@Unfolding Energy - mRNA 9.76724 kcal/mol@LB@Unfolding Energy - sRNA 4.60844 kcal/mol@LB@@LB@Position - mRNA 257 -- 299@LB@Position - sRNA 7 -- 46@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 60 |
0.001479 |
0.08283 |
b1886 |
tar |
-8.65 |
0.283085 |
258 -- 290 |
4 -- 38 |
methyl-accepting chemotaxis protein II |
|
_____________257__________________________________291\n_____________|____________________________________|\n5'-UGC...UCGCA___U______________CC___CAGUC________UCUUC...UUC-3'\n______________CUG_UACAGCU__UAUUU___GG_____UGUUUUUU\n______________|||_|||||||__:||||___||_____|||||||:\n______________GAC_AUGUCGA__GUAAA___CC_____ACAAAAAG\n3'-UUU...CCAAG___C_______UC_____AUA__CAAU_________UCG-5'\n_____________|____________________________________|\n_____________39___________________________________3\n |
284 -- 290 |
4 -- 10 |
-19.1357 kcal/mol |
5.94997 kcal/mol |
4.53981 kcal/mol |
257 291@LB@ | |@LB@5'-UGC...UCGCA U CC CAGUC UCUUC...UUC-3'@LB@ CUG UACAGCU UAUUU GG UGUUUUUU@LB@ ||| ||||||| :|||| || |||||||:@LB@ GAC AUGUCGA GUAAA CC ACAAAAAG@LB@3'-UUU...CCAAG C UC AUA CAAU UCG-5'@LB@ | |@LB@ 39 3@LB@@LB@@LB@Energy -8.65 kcal/mol@LB@Hybridization Energy -19.1357 kcal/mol@LB@Unfolding Energy - mRNA 5.94997 kcal/mol@LB@Unfolding Energy - sRNA 4.53981 kcal/mol@LB@@LB@Position - mRNA 258 -- 290@LB@Position - sRNA 4 -- 38@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 5 |
6.68e-06 |
0.00395 |
b1918 |
yecS |
-16.73 |
0.003069 |
259 -- 299 |
1 -- 36 |
ABC family putative inner membrane permease |
|
_____________258________________________________________300\n_____________|__________________________________________|\n5'-GGC...GGCUG______C_______ACUCAG___C__C_GC____________U-3'\n______________GGUAUA_GCU_GCA______UAU_GG_G__AUGUUUUUUGGC\n______________||||:|_|||_|||______|||_||_|__||||||||::||\n______________CCAUGU_CGA_CGU______AUA_CC_C__UACAAAAAGUCG\n3'-UUU...AAGGA__________U___AAA___________AA____________-5'\n_____________|_________________________________________|\n_____________37________________________________________1\n |
293 -- 299 |
1 -- 7 |
-28.0078 kcal/mol |
9.77847 kcal/mol |
1.49509 kcal/mol |
258 300@LB@ | |@LB@5'-GGC...GGCUG C ACUCAG C C GC U-3'@LB@ GGUAUA GCU GCA UAU GG G AUGUUUUUUGGC@LB@ ||||:| ||| ||| ||| || | ||||||||::||@LB@ CCAUGU CGA CGU AUA CC C UACAAAAAGUCG@LB@3'-UUU...AAGGA U AAA AA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -16.73 kcal/mol@LB@Hybridization Energy -28.0078 kcal/mol@LB@Unfolding Energy - mRNA 9.77847 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 259 -- 299@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 13 |
6.02e-05 |
0.01556 |
b1686 |
menI |
-18.50 |
0.000608 |
260 -- 300 |
10 -- 49 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________259_______________________________________300\n_____________|_________________________________________|\n5'-GGC...AACAU__U____________A___UC___UUGAACA___U___G___-3'\n______________GG_GG_GGUUCCUGG_UAU__GCU_______UAU_GGU_AUG\n______________||_||_|||||||||_||:__|||_______|||_|||_|||\n______________CC_CC_CCAAGGACC_AUG__CGA_______AUA_CCA_UAC\n3'-UUU...CGAUU__U__A_____________U____UCGUAAA___C___A___AAAAA...UCG-5'\n_____________|__________________________________________|\n_____________50_________________________________________9\n |
267 -- 273 |
35 -- 41 |
-31.9875 kcal/mol |
8.87718 kcal/mol |
4.60649 kcal/mol |
259 300@LB@ | |@LB@5'-GGC...AACAU U A UC UUGAACA U G -3'@LB@ GG GG GGUUCCUGG UAU GCU UAU GGU AUG@LB@ || || ||||||||| ||: ||| ||| ||| |||@LB@ CC CC CCAAGGACC AUG CGA AUA CCA UAC@LB@3'-UUU...CGAUU U A U UCGUAAA C A AAAAA...UCG-5'@LB@ | |@LB@ 50 9@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -31.9875 kcal/mol@LB@Unfolding Energy - mRNA 8.87718 kcal/mol@LB@Unfolding Energy - sRNA 4.60649 kcal/mol@LB@@LB@Position - mRNA 260 -- 300@LB@Position - sRNA 10 -- 49@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 51 |
0.001198 |
0.07744 |
b2174 |
lpxT |
-10.53 |
0.132559 |
260 -- 270 |
31 -- 41 |
lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase |
|
_____________259_________271\n_____________|___________|\n5'-GAA...UUUCU___________UCCCC...CGA-3'\n______________UUCCUGGUAUA\n______________|||||||||:|\n______________AAGGACCAUGU\n3'-UUU...CCACC___________CGAUC...UCG-5'\n_____________|___________|\n_____________42__________30\n |
264 -- 270 |
31 -- 37 |
-15.7095 kcal/mol |
1.92057 kcal/mol |
3.2552 kcal/mol |
259 271@LB@ | |@LB@5'-GAA...UUUCU UCCCC...CGA-3'@LB@ UUCCUGGUAUA@LB@ |||||||||:|@LB@ AAGGACCAUGU@LB@3'-UUU...CCACC CGAUC...UCG-5'@LB@ | |@LB@ 42 30@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -15.7095 kcal/mol@LB@Unfolding Energy - mRNA 1.92057 kcal/mol@LB@Unfolding Energy - sRNA 3.2552 kcal/mol@LB@@LB@Position - mRNA 260 -- 270@LB@Position - sRNA 31 -- 41@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 166 |
0.008687 |
0.1759 |
b3210 |
arcB |
-6.83 |
0.499810 |
260 -- 284 |
24 -- 46 |
aerobic respiration control sensor histidine protein kinase cognate to two-component response regulators ArcA and RssB |
|
_____________259_______________________285\n_____________|_________________________|\n5'-UGC...GGUCU____C_C____CAAUGUU_______CUGGC...UUC-3'\n______________GGUG_G_UUCU_______GCUGGCG\n______________||||_|_|||:_______|||:||:\n______________CCAC_C_AAGG_______CGAUCGU\n3'-UUU...UUCCU___________ACCAUGU_______AAAAU...UCG-5'\n_____________|_________________________|\n_____________47________________________23\n |
278 -- 284 |
24 -- 30 |
-17.917 kcal/mol |
6.53164 kcal/mol |
4.55813 kcal/mol |
259 285@LB@ | |@LB@5'-UGC...GGUCU C C CAAUGUU CUGGC...UUC-3'@LB@ GGUG G UUCU GCUGGCG@LB@ |||| | |||: |||:||:@LB@ CCAC C AAGG CGAUCGU@LB@3'-UUU...UUCCU ACCAUGU AAAAU...UCG-5'@LB@ | |@LB@ 47 23@LB@@LB@@LB@Energy -6.83 kcal/mol@LB@Hybridization Energy -17.917 kcal/mol@LB@Unfolding Energy - mRNA 6.53164 kcal/mol@LB@Unfolding Energy - sRNA 4.55813 kcal/mol@LB@@LB@Position - mRNA 260 -- 284@LB@Position - sRNA 24 -- 46@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 162 |
0.008285 |
0.1719 |
b3671 |
ilvB |
-15.19 |
0.009769 |
264 -- 284 |
22 -- 41 |
acetolactate synthase 2 large subunit |
|
_____________263___________________285\n_____________|_____________________|\n5'-CUA...UUCAU_______A_____AG______AAGAU...GCA-3'\n______________UUCCUGG_ACAGC__GGCAUU\n______________|||||||_|||||__:|||||\n______________AAGGACC_UGUCG__UCGUAA\n3'-UUU...CCACC_______A_____A_______AAUAC...UCG-5'\n_____________|_____________________|\n_____________42____________________21\n |
264 -- 270 |
35 -- 41 |
-26.898 kcal/mol |
7.14717 kcal/mol |
4.5564 kcal/mol |
263 285@LB@ | |@LB@5'-CUA...UUCAU A AG AAGAU...GCA-3'@LB@ UUCCUGG ACAGC GGCAUU@LB@ ||||||| ||||| :|||||@LB@ AAGGACC UGUCG UCGUAA@LB@3'-UUU...CCACC A A AAUAC...UCG-5'@LB@ | |@LB@ 42 21@LB@@LB@@LB@Energy -15.19 kcal/mol@LB@Hybridization Energy -26.898 kcal/mol@LB@Unfolding Energy - mRNA 7.14717 kcal/mol@LB@Unfolding Energy - sRNA 4.5564 kcal/mol@LB@@LB@Position - mRNA 264 -- 284@LB@Position - sRNA 22 -- 41@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 134 |
0.005847 |
0.146 |
b0065 |
yabI |
-9.48 |
0.206647 |
266 -- 290 |
24 -- 46 |
DedA family inner membrane protein |
|
_____________265_______________________291\n_____________|_________________________|\n5'-UGA...GUGUU_____CC_______AGUC_______CUGGU...GUU-3'\n______________GGUGG__UUUCUGG____GCUGGCG\n______________|||||__||:||||____|||:||:\n______________CCACC__AAGGACC____CGAUCGU\n3'-UUU...UUCCU______________AUGU_______AAAAU...UCG-5'\n_____________|_________________________|\n_____________47________________________23\n |
284 -- 290 |
24 -- 30 |
-26.6068 kcal/mol |
12.5692 kcal/mol |
4.55813 kcal/mol |
265 291@LB@ | |@LB@5'-UGA...GUGUU CC AGUC CUGGU...GUU-3'@LB@ GGUGG UUUCUGG GCUGGCG@LB@ ||||| ||:|||| |||:||:@LB@ CCACC AAGGACC CGAUCGU@LB@3'-UUU...UUCCU AUGU AAAAU...UCG-5'@LB@ | |@LB@ 47 23@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -26.6068 kcal/mol@LB@Unfolding Energy - mRNA 12.5692 kcal/mol@LB@Unfolding Energy - sRNA 4.55813 kcal/mol@LB@@LB@Position - mRNA 266 -- 290@LB@Position - sRNA 24 -- 46@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 24 -- 30@LB@ |
