175 |
0.004467 |
0.1171 |
pa2047 |
N/A |
-7.63 |
0.467709 |
171 -- 177 |
103 -- 109 |
transcriptional regulator |
|
_____________170_____178\n_____________|_______|\n5'-CCC...UGCUU_______CCUGC...CCG-3'\n______________GCCUGAU\n______________|||||||\n______________CGGACUA\n3'-UUU...CUAAU_______CUCCU...GUU-5'\n_____________|_______|\n_____________110_____102\n |
171 -- 177 |
103 -- 109 |
-11.5321 kcal/mol |
1.79595 kcal/mol |
2.10421 kcal/mol |
170 178@LB@ | |@LB@5'-CCC...UGCUU CCUGC...CCG-3'@LB@ GCCUGAU@LB@ |||||||@LB@ CGGACUA@LB@3'-UUU...CUAAU CUCCU...GUU-5'@LB@ | |@LB@ 110 102@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -11.5321 kcal/mol@LB@Unfolding Energy - mRNA 1.79595 kcal/mol@LB@Unfolding Energy - sRNA 2.10421 kcal/mol@LB@@LB@Position - mRNA 171 -- 177@LB@Position - sRNA 103 -- 109@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 103 -- 109@LB@ |
128 |
0.00255 |
0.0912 |
pa3463 |
N/A |
-7.51 |
0.486845 |
225 -- 240 |
104 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________224_________________241\n_____________|___________________|\n5'-UCG...UGCUC_______ACAC________ACAAC...CGC-3'\n______________GAAGCCG_______CCUGA\n______________:||:|||_______|||||\n______________UUUUGGC_______GGACU\n3'-UUU...CCAGU_______ACUAAUC_____ACUCC...GUU-5'\n_____________|___________________|\n_____________123_________________103\n |
225 -- 231 |
116 -- 122 |
-12.6194 kcal/mol |
2.87159 kcal/mol |
2.24249 kcal/mol |
224 241@LB@ | |@LB@5'-UCG...UGCUC ACAC ACAAC...CGC-3'@LB@ GAAGCCG CCUGA@LB@ :||:||| |||||@LB@ UUUUGGC GGACU@LB@3'-UUU...CCAGU ACUAAUC ACUCC...GUU-5'@LB@ | |@LB@ 123 103@LB@@LB@@LB@Energy -7.51 kcal/mol@LB@Hybridization Energy -12.6194 kcal/mol@LB@Unfolding Energy - mRNA 2.87159 kcal/mol@LB@Unfolding Energy - sRNA 2.24249 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 104 -- 122@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 116 -- 122@LB@ |
1 |
0 |
0 |
pa3775 |
N/A |
-6.65 |
0.627514 |
32 -- 38 |
50 -- 56 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________31______39\n_____________|_______|\n5'-CGA...CGGCA_______AGCCG...UGU-3'\n______________CGGCUGA\n______________|||||||\n______________GCCGACU\n3'-UUU...GAAUG_______AGAGC...GUU-5'\n_____________|_______|\n_____________57______49\n |
32 -- 38 |
50 -- 56 |
-12.177 kcal/mol |
0.20262 kcal/mol |
5.33178 kcal/mol |
31 39@LB@ | |@LB@5'-CGA...CGGCA AGCCG...UGU-3'@LB@ CGGCUGA@LB@ |||||||@LB@ GCCGACU@LB@3'-UUU...GAAUG AGAGC...GUU-5'@LB@ | |@LB@ 57 49@LB@@LB@@LB@Energy -6.65 kcal/mol@LB@Hybridization Energy -12.177 kcal/mol@LB@Unfolding Energy - mRNA 0.20262 kcal/mol@LB@Unfolding Energy - sRNA 5.33178 kcal/mol@LB@@LB@Position - mRNA 32 -- 38@LB@Position - sRNA 50 -- 56@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 50 -- 56@LB@ |
192 |
0.005234 |
0.1243 |
pa1840 |
N/A |
-6.31 |
0.681723 |
125 -- 149 |
99 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________124_________________________150\n_____________|___________________________|\n5'-GCA...GCGCC_______GC_______G_____G____UCUUG...ACG-3'\n______________GAGAUCG__GA__GGC_CUGGU_GAGG\n______________:|:|:||__||__:||_|||:|_||||\n______________UUUUGGC__CU__UCG_GACUA_CUCC\n3'-UUU...CCAGU_______A___AA______________UCUAU...GUU-5'\n_____________|___________________________|\n_____________123_________________________98\n |
125 -- 131 |
116 -- 122 |
-20.2979 kcal/mol |
11.7389 kcal/mol |
2.25034 kcal/mol |
124 150@LB@ | |@LB@5'-GCA...GCGCC GC G G UCUUG...ACG-3'@LB@ GAGAUCG GA GGC CUGGU GAGG@LB@ :|:|:|| || :|| |||:| ||||@LB@ UUUUGGC CU UCG GACUA CUCC@LB@3'-UUU...CCAGU A AA UCUAU...GUU-5'@LB@ | |@LB@ 123 98@LB@@LB@@LB@Energy -6.31 kcal/mol@LB@Hybridization Energy -20.2979 kcal/mol@LB@Unfolding Energy - mRNA 11.7389 kcal/mol@LB@Unfolding Energy - sRNA 2.25034 kcal/mol@LB@@LB@Position - mRNA 125 -- 149@LB@Position - sRNA 99 -- 122@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 116 -- 122@LB@ |
139 |
0.002816 |
0.0931 |
pa1173 |
napB |
-8.92 |
0.288683 |
179 -- 194 |
100 -- 120 |
cytochrome C protein NapB |
|
_____________178___________________195\n_____________|_____________________|\n5'-GCG...UGCUC_________________G___CGCGC...ACG-3'\n______________AACC_____UGGCCUGA_GAG\n______________||||_____|:||||||_|||\n______________UUGG_____AUCGGACU_CUC\n3'-UUU...AGUUU____CACUA________A___CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
184 -- 190 |
104 -- 110 |
-18.0021 kcal/mol |
6.83795 kcal/mol |
2.24919 kcal/mol |
178 195@LB@ | |@LB@5'-GCG...UGCUC G CGCGC...ACG-3'@LB@ AACC UGGCCUGA GAG@LB@ |||| |:|||||| |||@LB@ UUGG AUCGGACU CUC@LB@3'-UUU...AGUUU CACUA A CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -8.92 kcal/mol@LB@Hybridization Energy -18.0021 kcal/mol@LB@Unfolding Energy - mRNA 6.83795 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 179 -- 194@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 104 -- 110@LB@ |
63 |
0.0005567 |
0.04061 |
pa4538 |
ndh |
-15.78 |
0.005953 |
57 -- 71 |
102 -- 118 |
NADH dehydrogenase |
|
_____________56________________72\n_____________|_________________|\n5'-AGG...UCCGC_________________UUCGU...UCA-3'\n______________CCGUGGUU__CCUGAUG\n______________|||||:||__|||||||\n______________GGCACUAA__GGACUAC\n3'-UUU...UUUUU________UC_______UCCUC...GUU-5'\n_____________|_________________|\n_____________119_______________101\n |
65 -- 71 |
102 -- 108 |
-20.7877 kcal/mol |
2.76363 kcal/mol |
2.2426 kcal/mol |
56 72@LB@ | |@LB@5'-AGG...UCCGC UUCGU...UCA-3'@LB@ CCGUGGUU CCUGAUG@LB@ |||||:|| |||||||@LB@ GGCACUAA GGACUAC@LB@3'-UUU...UUUUU UC UCCUC...GUU-5'@LB@ | |@LB@ 119 101@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -20.7877 kcal/mol@LB@Unfolding Energy - mRNA 2.76363 kcal/mol@LB@Unfolding Energy - sRNA 2.2426 kcal/mol@LB@@LB@Position - mRNA 57 -- 71@LB@Position - sRNA 102 -- 118@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 102 -- 108@LB@ |
136 |
0.00271 |
0.09122 |
pa0516 |
nirF |
-12.42 |
0.050980 |
176 -- 250 |
51 -- 109 |
heme d1 biosynthesis protein NirF |
pa0519 pa0509 |
_____________175___________________________________________________________________________251\n_____________|_____________________________________________________________________________|\n5'-UCC...GGACC_______C_A___________GCCCCA____CCU_C____C___C___CC_CU___C____CCCU___C________UAGCC...UCG-3'\n______________GCCUGAU_G_AGGAGA_GAUC______UGAA___G_GUCC__CU_GCG__G__UCU_CUCA____GCU_GCCGGCUG\n______________|||||||_|_||||||_:|||______||||___|_||||__||_|||__|__|||_||||____|||_:|||||||\n______________CGGACUA_C_UCCUCU_UUAG______ACUU___C_CAGG__GA_CGC__C__AGA_GAGU____CGA_UGGCCGAC\n3'-UUU...CUAAU________________A__________________U____CU______A__CC_______________A________UAGAG...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________110___________________________________________________________________________50\n |
244 -- 250 |
51 -- 57 |
-56.426 kcal/mol |
22.2414 kcal/mol |
21.7733 kcal/mol |
175 251@LB@ | |@LB@5'-UCC...GGACC C A GCCCCA CCU C C C CC CU C CCCU C UAGCC...UCG-3'@LB@ GCCUGAU G AGGAGA GAUC UGAA G GUCC CU GCG G UCU CUCA GCU GCCGGCUG@LB@ ||||||| | |||||| :||| |||| | |||| || ||| | ||| |||| ||| :|||||||@LB@ CGGACUA C UCCUCU UUAG ACUU C CAGG GA CGC C AGA GAGU CGA UGGCCGAC@LB@3'-UUU...CUAAU A U CU A CC A UAGAG...GUU-5'@LB@ | |@LB@ 110 50@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -56.426 kcal/mol@LB@Unfolding Energy - mRNA 22.2414 kcal/mol@LB@Unfolding Energy - sRNA 21.7733 kcal/mol@LB@@LB@Position - mRNA 176 -- 250@LB@Position - sRNA 51 -- 109@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 51 -- 57@LB@ |
156 |
0.00379 |
0.1117 |
pa3495 |
nth |
-14.09 |
0.018638 |
94 -- 117 |
105 -- 123 |
endonuclease III |
|
_____________93_______________________118\n_____________|________________________|\n5'-UGG...CCCUG_________AUC___GAA______GCGGA...UCA-3'\n______________AAGAACCGU___GAU___AGCCUG\n______________||:||||||___|||___||||||\n______________UUUUUGGCA___CUA___UCGGAC\n3'-UUU...CCCAG_______________A________UACUC...GUU-5'\n_____________|________________________|\n_____________124______________________104\n |
96 -- 102 |
115 -- 121 |
-18.312 kcal/mol |
1.98459 kcal/mol |
2.24275 kcal/mol |
93 118@LB@ | |@LB@5'-UGG...CCCUG AUC GAA GCGGA...UCA-3'@LB@ AAGAACCGU GAU AGCCUG@LB@ ||:|||||| ||| ||||||@LB@ UUUUUGGCA CUA UCGGAC@LB@3'-UUU...CCCAG A UACUC...GUU-5'@LB@ | |@LB@ 124 104@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -18.312 kcal/mol@LB@Unfolding Energy - mRNA 1.98459 kcal/mol@LB@Unfolding Energy - sRNA 2.24275 kcal/mol@LB@@LB@Position - mRNA 94 -- 117@LB@Position - sRNA 105 -- 123@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 115 -- 121@LB@ |
123 |
0.00223 |
0.08331 |
pa0552 |
pgk |
-10.33 |
0.153234 |
163 -- 259 |
42 -- 119 |
phosphoglycerate kinase |
|
_____________162________________________________________________________________________________________________________260\n_____________|__________________________________________________________________________________________________________|\n5'-CAC...GCGCC_________________CAACAAGUACCCA____CU___U___AUGACCGUGU_______________ACCUCGAC___AAA___AA__G__U_____________GGACC...GCG-3'\n______________GCCGU_____GCCUGAU_____________AGGA__GAU_GUC__________UGAAGA___UGACUG________CUC___GGU__GC_CG_GCUGAUC_CGCGA\n______________:||||_____|||||||_____________||||__|||_:||__________||||||___:|||||________|||___:|:__:|_||_|||||||_|||||\n______________UGGCA_____CGGACUA_____________UCCU__CUA_UAG__________ACUUCU___GCUGAC________GAG___UCG__UG_GC_CGACUAG_GCGCU\n3'-UUU...GUUUU_____CUAAU_______C_____________________U___________________CAG______GCACCCA____AG____AA_____________A_____GGUCA...GUU-5'\n_____________|__________________________________________________________________________________________________________|\n_____________120________________________________________________________________________________________________________41\n |
248 -- 254 |
48 -- 54 |
-58.6651 kcal/mol |
25.0123 kcal/mol |
23.3319 kcal/mol |
162 260@LB@ | |@LB@5'-CAC...GCGCC CAACAAGUACCCA CU U AUGACCGUGU ACCUCGAC AAA AA G U GGACC...GCG-3'@LB@ GCCGU GCCUGAU AGGA GAU GUC UGAAGA UGACUG CUC GGU GC CG GCUGAUC CGCGA@LB@ :|||| ||||||| |||| ||| :|| |||||| :||||| ||| :|: :| || ||||||| |||||@LB@ UGGCA CGGACUA UCCU CUA UAG ACUUCU GCUGAC GAG UCG UG GC CGACUAG GCGCU@LB@3'-UUU...GUUUU CUAAU C U CAG GCACCCA AG AA A GGUCA...GUU-5'@LB@ | |@LB@ 120 41@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -58.6651 kcal/mol@LB@Unfolding Energy - mRNA 25.0123 kcal/mol@LB@Unfolding Energy - sRNA 23.3319 kcal/mol@LB@@LB@Position - mRNA 163 -- 259@LB@Position - sRNA 42 -- 119@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 48 -- 54@LB@ |
98 |
0.001381 |
0.06477 |
pa5040 |
pilQ |
-10.76 |
0.123916 |
69 -- 120 |
75 -- 117 |
type 4 fimbrial biogenesis outer membrane protein PilQ |
|
_____________68_____________________________________________________121\n_____________|______________________________________________________|\n5'-GUG...AUAGA______CGAAAUCGUU_____CGGA_______ACUGG______C__________AGCCU...CAC-3'\n______________CGUGAU__________CCUGA____GAGGGGA_____CUGGAG_GUCCG_C_GC\n______________||||||__________|||||____||||:||_____|||:||_|||||_|_||\n______________GCACUA__________GGACU____CUCCUCU_____GACUUC_CAGGC_G_CG\n3'-UUU...UUUUG______AUC____________A__________AUUA_______U_____U_A__CACCC...GUU-5'\n_____________|______________________________________________________|\n_____________118____________________________________________________74\n |
94 -- 100 |
96 -- 102 |
-39.923 kcal/mol |
16.9987 kcal/mol |
12.1721 kcal/mol |
68 121@LB@ | |@LB@5'-GUG...AUAGA CGAAAUCGUU CGGA ACUGG C AGCCU...CAC-3'@LB@ CGUGAU CCUGA GAGGGGA CUGGAG GUCCG C GC@LB@ |||||| ||||| ||||:|| |||:|| ||||| | ||@LB@ GCACUA GGACU CUCCUCU GACUUC CAGGC G CG@LB@3'-UUU...UUUUG AUC A AUUA U U A CACCC...GUU-5'@LB@ | |@LB@ 118 74@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -39.923 kcal/mol@LB@Unfolding Energy - mRNA 16.9987 kcal/mol@LB@Unfolding Energy - sRNA 12.1721 kcal/mol@LB@@LB@Position - mRNA 69 -- 120@LB@Position - sRNA 75 -- 117@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 96 -- 102@LB@ |