171 |
0.01954 |
0.3812 |
b3687 |
ibpA |
-6.40 |
0.875621 |
11 -- 20 |
10 -- 18 |
heat shock chaperone |
|
_____________10____________21\n_____________|_____________|\n5'-AAC...GCCCC_______U_____AUAGA...GCU-3'\n______________CUCAGUC_AUGCA\n______________|||||||_|::||\n______________GAGUCAG_UGUGU\n3'-UUU...GUUAU_____________ACUAC...UAG-5'\n_____________|_____________|\n_____________19____________9\n |
19 -- 25 |
172 -- 178 |
-14.2159 kcal/mol |
5.36362 kcal/mol |
0.433674 kcal/mol |
10 21@LB@ | |@LB@5'-AAC...GCCCC U AUAGA...GCU-3'@LB@ CUCAGUC AUGCA@LB@ ||||||| |::||@LB@ GAGUCAG UGUGU@LB@3'-UUU...GUUAU ACUAC...UAG-5'@LB@ | |@LB@ 19 9@LB@@LB@@LB@Energy -6.40 kcal/mol@LB@Hybridization Energy -14.2159 kcal/mol@LB@Unfolding Energy - mRNA 5.36362 kcal/mol@LB@Unfolding Energy - sRNA 0.433674 kcal/mol@LB@@LB@Position - mRNA 11 -- 20@LB@Position - sRNA 10 -- 18@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 172 -- 178@LB@ |
172 |
0.01969 |
0.3812 |
b0213 |
yafS |
-9.47 |
0.344290 |
95 -- 113 |
1 -- 19 |
putative S-adenosyl-L-methionine-dependent methyltransferase |
|
_____________94________114\n_____________|_________|\n5'-UGG...UCAAA_________CUCCU...UCA-3'\n______________CUGUCGUGG\n______________||||||:||\n______________GACAGCGCC\n3'-UUU...GAAGC_________AUUUU...UAG-5'\n_____________|_________|\n_____________20________0\n |
228 -- 234 |
50 -- 56 |
-16.2917 kcal/mol |
2.78861 kcal/mol |
4.02 kcal/mol |
94 114@LB@ | |@LB@5'-UGG...UCAAA CUCCU...UCA-3'@LB@ CUGUCGUGG@LB@ ||||||:||@LB@ GACAGCGCC@LB@3'-UUU...GAAGC AUUUU...UAG-5'@LB@ | |@LB@ 20 0@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -16.2917 kcal/mol@LB@Unfolding Energy - mRNA 2.78861 kcal/mol@LB@Unfolding Energy - sRNA 4.02 kcal/mol@LB@@LB@Position - mRNA 95 -- 113@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 50 -- 56@LB@ |
173 |
0.0197 |
0.3812 |
b3210 |
arcB |
-10.66 |
0.206219 |
214 -- 224 |
197 -- 207 |
aerobic respiration control sensor histidine protein kinase cognate to two-component response regulators ArcA and RssB |
|
_____________213_________________225\n_____________|___________________|\n5'-UGC...UAACG_____G_____________AUUAU...UUC-3'\n______________UAACU_UCAGAAUUG_GGU\n______________:||||_|||||||||_|||\n______________GUUGA_AGUCUUAAC_CCA\n3'-UUU...GUUCA_____A_________G___GUAGG...UAG-5'\n_____________|___________________|\n_____________208_________________196\n |
156 -- 162 |
138 -- 144 |
-19.5528 kcal/mol |
4.59493 kcal/mol |
5.63708 kcal/mol |
213 225@LB@ | |@LB@5'-UGC...UAACG G AUUAU...UUC-3'@LB@ UAACU UCAGAAUUG GGU@LB@ :|||| ||||||||| |||@LB@ GUUGA AGUCUUAAC CCA@LB@3'-UUU...GUUCA A G GUAGG...UAG-5'@LB@ | |@LB@ 208 196@LB@@LB@@LB@Energy -10.66 kcal/mol@LB@Hybridization Energy -19.5528 kcal/mol@LB@Unfolding Energy - mRNA 4.59493 kcal/mol@LB@Unfolding Energy - sRNA 5.63708 kcal/mol@LB@@LB@Position - mRNA 214 -- 224@LB@Position - sRNA 197 -- 207@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 138 -- 144@LB@ |
174 |
0.01972 |
0.3812 |
b0478 |
ybaL |
-7.90 |
0.612018 |
5 -- 14 |
166 -- 176 |
inner membrane putative NAD(P)-binding transporter |
|
_____________4___________15\n_____________|___________|\n_______5'-UUUA___________AAGCC...UGG-3'\n______________CAGUCGC_CAU\n______________|||||:|_|||\n______________GUCAGUG_GUA\n3'-UUU...UAUGA_______U___CUACG...UAG-5'\n_____________|___________|\n_____________177_________165\n |
5 -- 11 |
170 -- 176 |
-11.743 kcal/mol |
0.493889 kcal/mol |
0.598087 kcal/mol |
4 15@LB@ | |@LB@ 5'-UUUA AAGCC...UGG-3'@LB@ CAGUCGC CAU@LB@ |||||:| |||@LB@ GUCAGUG GUA@LB@3'-UUU...UAUGA U CUACG...UAG-5'@LB@ | |@LB@ 177 165@LB@@LB@@LB@Energy -7.90 kcal/mol@LB@Hybridization Energy -11.743 kcal/mol@LB@Unfolding Energy - mRNA 0.493889 kcal/mol@LB@Unfolding Energy - sRNA 0.598087 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 166 -- 176@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 170 -- 176@LB@ |
175 |
0.0199 |
0.3812 |
b3085 |
ygjP |
-10.42 |
0.228945 |
225 -- 233 |
128 -- 136 |
putative metal dependent hydrolase |
|
_____________224_______234\n_____________|_________|\n5'-AAC...UUCAG_________GAGCA...AAC-3'\n______________GGUUAUCCC\n______________|||:|||||\n______________CCAGUAGGG\n3'-UUU...UAACG_________UGACG...UAG-5'\n_____________|_________|\n_____________137_______127\n |
227 -- 233 |
128 -- 134 |
-15.1258 kcal/mol |
2.43348 kcal/mol |
4.55487 kcal/mol |
224 234@LB@ | |@LB@5'-AAC...UUCAG GAGCA...AAC-3'@LB@ GGUUAUCCC@LB@ |||:|||||@LB@ CCAGUAGGG@LB@3'-UUU...UAACG UGACG...UAG-5'@LB@ | |@LB@ 137 127@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -15.1258 kcal/mol@LB@Unfolding Energy - mRNA 2.43348 kcal/mol@LB@Unfolding Energy - sRNA 4.55487 kcal/mol@LB@@LB@Position - mRNA 225 -- 233@LB@Position - sRNA 128 -- 136@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 128 -- 134@LB@ |
176 |
0.01994 |
0.3812 |
b2170 |
setB |
-11.80 |
0.122017 |
181 -- 237 |
58 -- 116 |
lactose/glucose efflux system |
|
_____________180____________238\n_____________|______________|\n5'-GCU...GAUCG______________AACUC...UGC-3'\n______________AC_CAG_CAUGCAU\n______________||_|||_||::|||\n______________UG_GUC_GUGUGUA\n3'-UUU...GGUUA__A___A_______CUACG...UAG-5'\n_____________|______________|\n_____________117____________57\n |
200 -- 206 |
166 -- 172 |
-10.2756 kcal/mol |
1.89616 kcal/mol |
0.604817 kcal/mol |
180 238@LB@ | |@LB@5'-GCU...GAUCG AACUC...UGC-3'@LB@ AC CAG CAUGCAU@LB@ || ||| ||::|||@LB@ UG GUC GUGUGUA@LB@3'-UUU...GGUUA A A CUACG...UAG-5'@LB@ | |@LB@ 117 57@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -10.2756 kcal/mol@LB@Unfolding Energy - mRNA 1.89616 kcal/mol@LB@Unfolding Energy - sRNA 0.604817 kcal/mol@LB@@LB@Position - mRNA 181 -- 237@LB@Position - sRNA 58 -- 116@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 166 -- 172@LB@ |
177 |
0.02028 |
0.3833 |
b1732 |
katE |
-12.45 |
0.090323 |
227 -- 246 |
168 -- 187 |
catalase HPII heme d-containing |
|
_____________226___________________247\n_____________|_____________________|\n5'-UGG...AACCC_______C__________C__UACAC...ACG-3'\n______________ACAUCAG_AC_CAGUCAC_AC\n______________|||:||:_||_|||||||_||\n______________UGUGGUU_UG_GUCAGUG_UG\n3'-UUU...UAAAA_______A__A__________UACUA...UAG-5'\n_____________|_____________________|\n_____________188___________________167\n |
237 -- 243 |
170 -- 176 |
-19.9766 kcal/mol |
1.23864 kcal/mol |
4.88067 kcal/mol |
226 247@LB@ | |@LB@5'-UGG...AACCC C C UACAC...ACG-3'@LB@ ACAUCAG AC CAGUCAC AC@LB@ |||:||: || ||||||| ||@LB@ UGUGGUU UG GUCAGUG UG@LB@3'-UUU...UAAAA A A UACUA...UAG-5'@LB@ | |@LB@ 188 167@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -19.9766 kcal/mol@LB@Unfolding Energy - mRNA 1.23864 kcal/mol@LB@Unfolding Energy - sRNA 4.88067 kcal/mol@LB@@LB@Position - mRNA 227 -- 246@LB@Position - sRNA 168 -- 187@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 170 -- 176@LB@ |
178 |
0.02044 |
0.3833 |
b3433 |
asd |
-8.72 |
0.462346 |
170 -- 185 |
58 -- 71 |
aspartate-semialdehyde dehydrogenase NAD(P)-binding |
|
_____________169__________________186\n_____________|____________________|\n5'-UCA...UUAUA___________CUU______AAAAA...UCU-3'\n______________CAG_CACACAU___UGCAGG\n______________|||_|||||||___||||||\n______________GUC_GUGUGUA___ACGUCC\n3'-UUU...UAUGA___A_______CU_______GUUCA...UAG-5'\n_____________|____________________|\n_____________72___________________57\n |
173 -- 179 |
166 -- 172 |
-22.5694 kcal/mol |
4.04779 kcal/mol |
7.34152 kcal/mol |
169 186@LB@ | |@LB@5'-UCA...UUAUA CUU AAAAA...UCU-3'@LB@ CAG CACACAU UGCAGG@LB@ ||| ||||||| ||||||@LB@ GUC GUGUGUA ACGUCC@LB@3'-UUU...UAUGA A CU GUUCA...UAG-5'@LB@ | |@LB@ 72 57@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -22.5694 kcal/mol@LB@Unfolding Energy - mRNA 4.04779 kcal/mol@LB@Unfolding Energy - sRNA 7.34152 kcal/mol@LB@@LB@Position - mRNA 170 -- 185@LB@Position - sRNA 58 -- 71@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 166 -- 172@LB@ |
179 |
0.02059 |
0.3833 |
b2535 |
csiE |
-10.55 |
0.216292 |
103 -- 142 |
58 -- 90 |
stationary phase inducible protein |
|
_____________102___________143\n_____________|_____________|\n5'-GCA...GAUUA__________C__CAUUU...UGG-3'\n______________GCAUUCCCUU_GC\n______________|||::|||||_||\n______________CGUGGGGGAA_CG\n3'-UUU...UACCC_____________AAGUAG-5'\n_____________|_____________|\n_____________91____________57\n |
133 -- 139 |
9 -- 15 |
-16.9052 kcal/mol |
2.85301 kcal/mol |
6.64496 kcal/mol |
102 143@LB@ | |@LB@5'-GCA...GAUUA C CAUUU...UGG-3'@LB@ GCAUUCCCUU GC@LB@ |||::||||| ||@LB@ CGUGGGGGAA CG@LB@3'-UUU...UACCC AAGUAG-5'@LB@ | |@LB@ 91 57@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -16.9052 kcal/mol@LB@Unfolding Energy - mRNA 2.85301 kcal/mol@LB@Unfolding Energy - sRNA 6.64496 kcal/mol@LB@@LB@Position - mRNA 103 -- 142@LB@Position - sRNA 58 -- 90@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 9 -- 15@LB@ |
180 |
0.02081 |
0.3833 |
b3728 |
pstS |
-9.23 |
0.378852 |
18 -- 25 |
128 -- 135 |
phosphate ABC transporter periplasmic binding protein |
|
_____________17___________26\n_____________|____________|\n5'-AGA...UCCUA____________GUAGC...GUG-3'\n______________UUUUGCUUC_UC\n______________::|||||||_||\n______________GGAACGAAG_AG\n3'-UUU...GUGGG_________U__-5'\n_____________|___________|\n_____________136_________128\n |
149 -- 155 |
4 -- 10 |
-10.5275 kcal/mol |
1.71006 kcal/mol |
1.04836 kcal/mol |
17 26@LB@ | |@LB@5'-AGA...UCCUA GUAGC...GUG-3'@LB@ UUUUGCUUC UC@LB@ ::||||||| ||@LB@ GGAACGAAG AG@LB@3'-UUU...GUGGG U -5'@LB@ | |@LB@ 136 128@LB@@LB@@LB@Energy -9.23 kcal/mol@LB@Hybridization Energy -10.5275 kcal/mol@LB@Unfolding Energy - mRNA 1.71006 kcal/mol@LB@Unfolding Energy - sRNA 1.04836 kcal/mol@LB@@LB@Position - mRNA 18 -- 25@LB@Position - sRNA 128 -- 135@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 4 -- 10@LB@ |