173 |
0.02087 |
0.4033 |
b2239 |
glpQ |
-12.95 |
0.026326 |
256 -- 274 |
41 -- 66 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________255________________________275\n_____________|__________________________|\n5'-CGG...AGUCA__________________________GGCGG...UCA-3'\n______________UGGGAA_______GCAGUGCAAUGGC\n______________|||:||_______|||:|||||||||\n______________ACCUUU_______CGUUACGUUACCG\n3'-UUU...AUACA______UAGUCAC_____________GGUUG...UUG-5'\n_____________|__________________________|\n_____________67_________________________40\n |
268 -- 274 |
41 -- 47 |
-26.6029 kcal/mol |
7.82977 kcal/mol |
5.82355 kcal/mol |
255 275@LB@ | |@LB@5'-CGG...AGUCA GGCGG...UCA-3'@LB@ UGGGAA GCAGUGCAAUGGC@LB@ |||:|| |||:|||||||||@LB@ ACCUUU CGUUACGUUACCG@LB@3'-UUU...AUACA UAGUCAC GGUUG...UUG-5'@LB@ | |@LB@ 67 40@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -26.6029 kcal/mol@LB@Unfolding Energy - mRNA 7.82977 kcal/mol@LB@Unfolding Energy - sRNA 5.82355 kcal/mol@LB@@LB@Position - mRNA 256 -- 274@LB@Position - sRNA 41 -- 66@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 41 -- 47@LB@ |
175 |
0.02099 |
0.4033 |
b2913 |
serA |
-5.57 |
0.642321 |
190 -- 257 |
5 -- 65 |
D-3-phosphoglycerate dehydrogenase |
|
_____________189_____________________________________________________________________258\n_____________|_______________________________________________________________________|\n5'-UGU...AGACA___UU____AAA______AG___UCGC___AGAAA________U____UU____C________________CACCA...CCA-3'\n______________GGA__GGGU___UGGCAA__GUA____UGG_____GACA_AGA_UAAG__UCUG_UGGUA__GAAGGCGUG\n______________|||__:::|___||||||__|:|____|||_____:|||_|:|_|||:__||||_||::|__:|||||:|:\n______________CCU__UUUA___ACCGUU__CGU____ACC_____UUGU_UUU_AUUU__AGAC_ACUGU__UUUCCGUAU\n3'-UUU...UACAA_________GUC______A____U______GGG______C___U____U___________UA_________AUUG-5'\n_____________|_______________________________________________________________________|\n_____________66______________________________________________________________________4\n |
251 -- 257 |
5 -- 11 |
-32.5395 kcal/mol |
14.8085 kcal/mol |
12.157 kcal/mol |
189 258@LB@ | |@LB@5'-UGU...AGACA UU AAA AG UCGC AGAAA U UU C CACCA...CCA-3'@LB@ GGA GGGU UGGCAA GUA UGG GACA AGA UAAG UCUG UGGUA GAAGGCGUG@LB@ ||| :::| |||||| |:| ||| :||| |:| |||: |||| ||::| :|||||:|:@LB@ CCU UUUA ACCGUU CGU ACC UUGU UUU AUUU AGAC ACUGU UUUCCGUAU@LB@3'-UUU...UACAA GUC A U GGG C U U UA AUUG-5'@LB@ | |@LB@ 66 4@LB@@LB@@LB@Energy -5.57 kcal/mol@LB@Hybridization Energy -32.5395 kcal/mol@LB@Unfolding Energy - mRNA 14.8085 kcal/mol@LB@Unfolding Energy - sRNA 12.157 kcal/mol@LB@@LB@Position - mRNA 190 -- 257@LB@Position - sRNA 5 -- 65@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 5 -- 11@LB@ |
171 |
0.02062 |
0.4033 |
b3192 |
mlaC |
-11.25 |
0.065504 |
113 -- 124 |
47 -- 58 |
ABC transporter maintaining OM lipid asymmetry periplasmic binding protein |
|
_____________112__________125\n_____________|____________|\n5'-GGA...AAGAA____________GCCAG...AGG-3'\n______________UAGUGGCGAUGC\n______________:||||||:||||\n______________GUCACCGUUACG\n3'-UUU...UUUUA____________UUACC...UUG-5'\n_____________|____________|\n_____________59___________46\n |
118 -- 124 |
47 -- 53 |
-20.0531 kcal/mol |
5.42731 kcal/mol |
3.37136 kcal/mol |
112 125@LB@ | |@LB@5'-GGA...AAGAA GCCAG...AGG-3'@LB@ UAGUGGCGAUGC@LB@ :||||||:||||@LB@ GUCACCGUUACG@LB@3'-UUU...UUUUA UUACC...UUG-5'@LB@ | |@LB@ 59 46@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -20.0531 kcal/mol@LB@Unfolding Energy - mRNA 5.42731 kcal/mol@LB@Unfolding Energy - sRNA 3.37136 kcal/mol@LB@@LB@Position - mRNA 113 -- 124@LB@Position - sRNA 47 -- 58@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 47 -- 53@LB@ |
170 |
0.02048 |
0.4033 |
b3201 |
lptB |
-9.27 |
0.170285 |
9 -- 55 |
2 -- 54 |
lipopolysaccharide export ABC transporter ATPase |
|
_____________8______________________________________________________56\n_____________|______________________________________________________|\n___5'-UUCUGACG________UUAUC_G_______UC___________CA___U_____________GAUCA...GUC-3'\n______________GGUAAUGC_____U_CAGCAGG__GAUA______G__ACA_UAAGGGCG_AUAA\n______________||:|||||_____:_||:|||:__:|||______|__|||_|||:|||:_||||\n______________CCGUUACG_____G_GUUGUCU__UUAU______C__UGU_AUUUCCGU_UAUU\n3'-UUU...AGUCA________UUACC_G_______U_____UUUAGA_AC___U________A____G-5'\n_____________|______________________________________________________|\n_____________55_____________________________________________________1\n |
45 -- 51 |
7 -- 13 |
-32.2484 kcal/mol |
10.9323 kcal/mol |
12.0447 kcal/mol |
8 56@LB@ | |@LB@ 5'-UUCUGACG UUAUC G UC CA U GAUCA...GUC-3'@LB@ GGUAAUGC U CAGCAGG GAUA G ACA UAAGGGCG AUAA@LB@ ||:||||| : ||:|||: :||| | ||| |||:|||: ||||@LB@ CCGUUACG G GUUGUCU UUAU C UGU AUUUCCGU UAUU@LB@3'-UUU...AGUCA UUACC G U UUUAGA AC U A G-5'@LB@ | |@LB@ 55 1@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -32.2484 kcal/mol@LB@Unfolding Energy - mRNA 10.9323 kcal/mol@LB@Unfolding Energy - sRNA 12.0447 kcal/mol@LB@@LB@Position - mRNA 9 -- 55@LB@Position - sRNA 2 -- 54@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 7 -- 13@LB@ |
174 |
0.02096 |
0.4033 |
b3929 |
rraA |
-13.95 |
0.014802 |
2 -- 21 |
45 -- 66 |
ribonuclease E (RNase E) inhibitor protein |
|
_____________1______________________22\n_____________|______________________|\n__________5'-A____CC________________CCAAU...GCG-3'\n______________UGGA____CGGUGGCGAUGCGA\n______________||||____|:|||||:||||:|\n______________ACCU____GUCACCGUUACGUU\n3'-UUU...AUACA____UUUA______________ACCGG...UUG-5'\n_____________|______________________|\n_____________67_____________________44\n |
15 -- 21 |
45 -- 51 |
-26.5083 kcal/mol |
8.28748 kcal/mol |
4.27166 kcal/mol |
1 22@LB@ | |@LB@ 5'-A CC CCAAU...GCG-3'@LB@ UGGA CGGUGGCGAUGCGA@LB@ |||| |:|||||:||||:|@LB@ ACCU GUCACCGUUACGUU@LB@3'-UUU...AUACA UUUA ACCGG...UUG-5'@LB@ | |@LB@ 67 44@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -26.5083 kcal/mol@LB@Unfolding Energy - mRNA 8.28748 kcal/mol@LB@Unfolding Energy - sRNA 4.27166 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 45 -- 66@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 45 -- 51@LB@ |
176 |
0.02144 |
0.4097 |
b0948 |
rlmL |
-6.91 |
0.434425 |
184 -- 201 |
13 -- 33 |
23S rRNA m(2)G2445 and m(7)G2069 methyltransferases SAM-dependent |
|
_____________183___________________202\n_____________|_____________________|\n5'-GAC...CUCUU_____________________UGAAU...GUG-3'\n______________AGAGUAAAA___GUGACGAUA\n______________|:|:|||||___|||||:|||\n______________UUUUAUUUU___CACUGUUAU\n3'-UUU...UUGUC_________AGA_________UUCCG...UUG-5'\n_____________|_____________________|\n_____________34____________________12\n |
195 -- 201 |
13 -- 19 |
-14.282 kcal/mol |
2.4415 kcal/mol |
4.9341 kcal/mol |
183 202@LB@ | |@LB@5'-GAC...CUCUU UGAAU...GUG-3'@LB@ AGAGUAAAA GUGACGAUA@LB@ |:|:||||| |||||:|||@LB@ UUUUAUUUU CACUGUUAU@LB@3'-UUU...UUGUC AGA UUCCG...UUG-5'@LB@ | |@LB@ 34 12@LB@@LB@@LB@Energy -6.91 kcal/mol@LB@Hybridization Energy -14.282 kcal/mol@LB@Unfolding Energy - mRNA 2.4415 kcal/mol@LB@Unfolding Energy - sRNA 4.9341 kcal/mol@LB@@LB@Position - mRNA 184 -- 201@LB@Position - sRNA 13 -- 33@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 13 -- 19@LB@ |
178 |
0.02184 |
0.4127 |
b1466 |
narW |
-11.23 |
0.066200 |
254 -- 267 |
42 -- 56 |
nitrate reductase 2 (NRZ) delta subunit (assembly subunit) |
|
_____________253_____________268\n_____________|_______________|\n5'-AUU...CUGUU____G__________AGGAC...CGC-3'\n______________GUGG_AAUGCAA_GG\n______________||||_|||||||_||\n______________CACC_UUACGUU_CC\n3'-UUU...UUAGU____G_______A__GGGUU...UUG-5'\n_____________|_______________|\n_____________57______________41\n |
259 -- 265 |
45 -- 51 |
-17.8423 kcal/mol |
3.07693 kcal/mol |
3.53153 kcal/mol |
253 268@LB@ | |@LB@5'-AUU...CUGUU G AGGAC...CGC-3'@LB@ GUGG AAUGCAA GG@LB@ |||| ||||||| ||@LB@ CACC UUACGUU CC@LB@3'-UUU...UUAGU G A GGGUU...UUG-5'@LB@ | |@LB@ 57 41@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -17.8423 kcal/mol@LB@Unfolding Energy - mRNA 3.07693 kcal/mol@LB@Unfolding Energy - sRNA 3.53153 kcal/mol@LB@@LB@Position - mRNA 254 -- 267@LB@Position - sRNA 42 -- 56@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 45 -- 51@LB@ |
177 |
0.02174 |
0.4127 |
b1725 |
yniA |
-12.81 |
0.028485 |
66 -- 113 |
12 -- 55 |
fructosamine kinase family protein |
|
_____________65__________________________________________________114\n_____________|___________________________________________________|\n5'-GAG...CGACC___G____G_____AAUAG______________UGGUU_____________UCAGU...GGC-3'\n______________UGG_A__G_AAUGG_____CAACAGAAAAUAAA_____UUUG_GGCAAUAA\n______________|||_|__|_|||||_____||||||||||||||_____|:||_|:||||||\n______________ACC_U__C_UUACC_____GUUGUCUUUUAUUU_____AGAC_CUGUUAUU\n3'-UUU...UAGUC___G_UA_G_____GG_________________U________A________UCCGU...UUG-5'\n_____________|___________________________________________________|\n_____________56__________________________________________________11\n |
107 -- 113 |
12 -- 18 |
-33.1768 kcal/mol |
9.27067 kcal/mol |
11.0975 kcal/mol |
65 114@LB@ | |@LB@5'-GAG...CGACC G G AAUAG UGGUU UCAGU...GGC-3'@LB@ UGG A G AAUGG CAACAGAAAAUAAA UUUG GGCAAUAA@LB@ ||| | | ||||| |||||||||||||| |:|| |:||||||@LB@ ACC U C UUACC GUUGUCUUUUAUUU AGAC CUGUUAUU@LB@3'-UUU...UAGUC G UA G GG U A UCCGU...UUG-5'@LB@ | |@LB@ 56 11@LB@@LB@@LB@Energy -12.81 kcal/mol@LB@Hybridization Energy -33.1768 kcal/mol@LB@Unfolding Energy - mRNA 9.27067 kcal/mol@LB@Unfolding Energy - sRNA 11.0975 kcal/mol@LB@@LB@Position - mRNA 66 -- 113@LB@Position - sRNA 12 -- 55@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 12 -- 18@LB@ |
180 |
0.02233 |
0.4143 |
b0435 |
bolA |
-10.38 |
0.101210 |
35 -- 46 |
39 -- 51 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________34____________47\n_____________|_____________|\n5'-UGA...ACACU_____________GUGUU...CCG-3'\n______________GAUGCGA_GGCCU\n______________:||||:|_||||:\n______________UUACGUU_CCGGG\n3'-UUU...CACCG_______A_____UUGUC...UUG-5'\n_____________|_____________|\n_____________52____________38\n |
35 -- 41 |
45 -- 51 |
-16.689 kcal/mol |
1.55914 kcal/mol |
4.74571 kcal/mol |
34 47@LB@ | |@LB@5'-UGA...ACACU GUGUU...CCG-3'@LB@ GAUGCGA GGCCU@LB@ :||||:| ||||:@LB@ UUACGUU CCGGG@LB@3'-UUU...CACCG A UUGUC...UUG-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -16.689 kcal/mol@LB@Unfolding Energy - mRNA 1.55914 kcal/mol@LB@Unfolding Energy - sRNA 4.74571 kcal/mol@LB@@LB@Position - mRNA 35 -- 46@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 45 -- 51@LB@ |
182 |
0.02271 |
0.4143 |
b1686 |
menI |
-7.81 |
0.313804 |
214 -- 222 |
57 -- 65 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________213_______223\n_____________|_________|\n5'-GGC...GAAAC_________CCCUG...AUG-3'\n______________GGAAAAUCA\n______________|||||||||\n______________CCUUUUAGU\n3'-UUU...UACAA_________CACCG...UUG-5'\n_____________|_________|\n_____________66________56\n |
216 -- 222 |
57 -- 63 |
-11.126 kcal/mol |
2.47866 kcal/mol |
0.839876 kcal/mol |
213 223@LB@ | |@LB@5'-GGC...GAAAC CCCUG...AUG-3'@LB@ GGAAAAUCA@LB@ |||||||||@LB@ CCUUUUAGU@LB@3'-UUU...UACAA CACCG...UUG-5'@LB@ | |@LB@ 66 56@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -11.126 kcal/mol@LB@Unfolding Energy - mRNA 2.47866 kcal/mol@LB@Unfolding Energy - sRNA 0.839876 kcal/mol@LB@@LB@Position - mRNA 214 -- 222@LB@Position - sRNA 57 -- 65@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 57 -- 63@LB@ |