172 |
0.01959 |
0.3668 |
b0336 |
codB |
-6.02 |
0.190787 |
88 -- 108 |
28 -- 40 |
cytosine transporter |
|
_____________87____________________109\n_____________|_____________________|\n5'-CCA...UUUUU_____CAUUCAUA________AUAUU...UUU-3'\n______________GCACU________UAAAAAAU\n______________|||||________||||||||\n______________CGUGA________AUUUUUUA\n3'-UUU...UUCUU_____________________AGCAA...CAA-5'\n_____________|_____________________|\n_____________41____________________27\n |
102 -- 108 |
28 -- 34 |
-8.50412 kcal/mol |
0.843154 kcal/mol |
1.63611 kcal/mol |
87 109@LB@ | |@LB@5'-CCA...UUUUU CAUUCAUA AUAUU...UUU-3'@LB@ GCACU UAAAAAAU@LB@ ||||| ||||||||@LB@ CGUGA AUUUUUUA@LB@3'-UUU...UUCUU AGCAA...CAA-5'@LB@ | |@LB@ 41 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -8.50412 kcal/mol@LB@Unfolding Energy - mRNA 0.843154 kcal/mol@LB@Unfolding Energy - sRNA 1.63611 kcal/mol@LB@@LB@Position - mRNA 88 -- 108@LB@Position - sRNA 28 -- 40@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 28 -- 34@LB@ |
171 |
0.01957 |
0.3668 |
b2498 |
upp |
-5.84 |
0.210430 |
244 -- 265 |
42 -- 61 |
uracil phosphoribosyltransferase |
|
_____________243____________________266\n_____________|______________________|\n5'-GGC...CAAGC_______GA___G_________UAUCA...CCG-3'\n______________UGGGACU__UGC_UGAGCAAGA\n______________||::|||__|||_|:|||||||\n______________ACUUUGA__ACG_AUUCGUUCU\n3'-UUU...GCCCU____________A_________UCGUG...CAA-5'\n_____________|______________________|\n_____________62_____________________41\n |
259 -- 265 |
42 -- 48 |
-21.1169 kcal/mol |
8.03919 kcal/mol |
7.23689 kcal/mol |
243 266@LB@ | |@LB@5'-GGC...CAAGC GA G UAUCA...CCG-3'@LB@ UGGGACU UGC UGAGCAAGA@LB@ ||::||| ||| |:|||||||@LB@ ACUUUGA ACG AUUCGUUCU@LB@3'-UUU...GCCCU A UCGUG...CAA-5'@LB@ | |@LB@ 62 41@LB@@LB@@LB@Energy -5.84 kcal/mol@LB@Hybridization Energy -21.1169 kcal/mol@LB@Unfolding Energy - mRNA 8.03919 kcal/mol@LB@Unfolding Energy - sRNA 7.23689 kcal/mol@LB@@LB@Position - mRNA 244 -- 265@LB@Position - sRNA 42 -- 61@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 42 -- 48@LB@ |
175 |
0.01993 |
0.3669 |
b0183 |
rnhB |
-5.94 |
0.199165 |
195 -- 215 |
23 -- 41 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
_____________194___________________216\n_____________|_____________________|\n5'-AAU...GAGUU_____AA___UC_________UAUCC...UCC-3'\n______________AGCAC__UGA__GAAUUUGUU\n______________|||||__|:|__:||||:|||\n______________UCGUG__AUU__UUUAAGCAA\n3'-UUU...GUUCU_____A____U__________UGUGG...CAA-5'\n_____________|_____________________|\n_____________42____________________22\n |
209 -- 215 |
23 -- 29 |
-11.3649 kcal/mol |
3.77136 kcal/mol |
1.64896 kcal/mol |
194 216@LB@ | |@LB@5'-AAU...GAGUU AA UC UAUCC...UCC-3'@LB@ AGCAC UGA GAAUUUGUU@LB@ ||||| |:| :||||:|||@LB@ UCGUG AUU UUUAAGCAA@LB@3'-UUU...GUUCU A U UGUGG...CAA-5'@LB@ | |@LB@ 42 22@LB@@LB@@LB@Energy -5.94 kcal/mol@LB@Hybridization Energy -11.3649 kcal/mol@LB@Unfolding Energy - mRNA 3.77136 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 195 -- 215@LB@Position - sRNA 23 -- 41@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 23 -- 29@LB@ |
173 |
0.01972 |
0.3669 |
b3426 |
glpD |
-5.91 |
0.203159 |
207 -- 224 |
3 -- 20 |
sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding |
|
_____________206_________________225\n_____________|___________________|\n5'-AAC...UGGAA____A_________U____AUAGG...AGG-3'\n______________ACCA__AGAUCUGA_UGUG\n______________||||__|:||||||_||||\n______________UGGU__UUUAGACU_ACAC\n3'-UUU...CAAUG____CC_____________AA-5'\n_____________|___________________|\n_____________21__________________2\n |
213 -- 219 |
7 -- 13 |
-16.1802 kcal/mol |
2.74973 kcal/mol |
7.52321 kcal/mol |
206 225@LB@ | |@LB@5'-AAC...UGGAA A U AUAGG...AGG-3'@LB@ ACCA AGAUCUGA UGUG@LB@ |||| |:|||||| ||||@LB@ UGGU UUUAGACU ACAC@LB@3'-UUU...CAAUG CC AA-5'@LB@ | |@LB@ 21 2@LB@@LB@@LB@Energy -5.91 kcal/mol@LB@Hybridization Energy -16.1802 kcal/mol@LB@Unfolding Energy - mRNA 2.74973 kcal/mol@LB@Unfolding Energy - sRNA 7.52321 kcal/mol@LB@@LB@Position - mRNA 207 -- 224@LB@Position - sRNA 3 -- 20@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 7 -- 13@LB@ |
174 |
0.01992 |
0.3669 |
b1098 |
tmk |
-8.25 |
0.051647 |
183 -- 196 |
29 -- 42 |
thymidylate kinase |
|
_____________182____________197\n_____________|______________|\n5'-UAA...UCUGA______________AAAAA...GCG-3'\n______________AAGUGCUUAAGGAA\n______________|||::|||||::||\n______________UUCGUGAAUUUUUU\n3'-UUU...CGUUC______________AAGCA...CAA-5'\n_____________|______________|\n_____________43_____________28\n |
190 -- 196 |
29 -- 35 |
-11.8447 kcal/mol |
1.97362 kcal/mol |
1.62369 kcal/mol |
182 197@LB@ | |@LB@5'-UAA...UCUGA AAAAA...GCG-3'@LB@ AAGUGCUUAAGGAA@LB@ |||::|||||::||@LB@ UUCGUGAAUUUUUU@LB@3'-UUU...CGUUC AAGCA...CAA-5'@LB@ | |@LB@ 43 28@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -11.8447 kcal/mol@LB@Unfolding Energy - mRNA 1.97362 kcal/mol@LB@Unfolding Energy - sRNA 1.62369 kcal/mol@LB@@LB@Position - mRNA 183 -- 196@LB@Position - sRNA 29 -- 42@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 29 -- 35@LB@ |
176 |
0.02022 |
0.37 |
b0495 |
ybbA |
-5.55 |
0.244939 |
212 -- 247 |
24 -- 59 |
putative ABC transporter ATPase |
|
_____________211___________________________________248\n_____________|_____________________________________|\n5'-GCC...GCGGA____A_____G____UCAUCAU___________C___CGGUC...UCA-3'\n______________AAAC_UUGUU_AAGU________CUUAAGAAGU_CGU\n______________||||_|||:|_|||:________|||||:||:|_|||\n______________UUUG_AACGA_UUCG________GAAUUUUUUA_GCA\n3'-UUU...CCUAC__________A____UUCUUCGU__________A___AUGUG...CAA-5'\n_____________|_____________________________________|\n_____________60____________________________________23\n |
235 -- 241 |
30 -- 36 |
-18.4731 kcal/mol |
6.64875 kcal/mol |
6.27609 kcal/mol |
211 248@LB@ | |@LB@5'-GCC...GCGGA A G UCAUCAU C CGGUC...UCA-3'@LB@ AAAC UUGUU AAGU CUUAAGAAGU CGU@LB@ |||| |||:| |||: |||||:||:| |||@LB@ UUUG AACGA UUCG GAAUUUUUUA GCA@LB@3'-UUU...CCUAC A UUCUUCGU A AUGUG...CAA-5'@LB@ | |@LB@ 60 23@LB@@LB@@LB@Energy -5.55 kcal/mol@LB@Hybridization Energy -18.4731 kcal/mol@LB@Unfolding Energy - mRNA 6.64875 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 212 -- 247@LB@Position - sRNA 24 -- 59@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 30 -- 36@LB@ |
177 |
0.02045 |
0.3721 |
b3148 |
yraN |
-6.85 |
0.120614 |
263 -- 276 |
37 -- 54 |
UPF0102 family protein |
|
_____________262________________277\n_____________|__________________|\n5'-GGU...GGCGA__________________AAGCG...GCA-3'\n______________UGC____GUGGGAAGCAC\n______________|||____|:::|||||||\n______________ACG____CGUUCUUCGUG\n3'-UUU...UUUGA___AAUU___________AAUUU...CAA-5'\n_____________|__________________|\n_____________55_________________36\n |
270 -- 276 |
37 -- 43 |
-17.1481 kcal/mol |
4.14332 kcal/mol |
6.1584 kcal/mol |
262 277@LB@ | |@LB@5'-GGU...GGCGA AAGCG...GCA-3'@LB@ UGC GUGGGAAGCAC@LB@ ||| |:::|||||||@LB@ ACG CGUUCUUCGUG@LB@3'-UUU...UUUGA AAUU AAUUU...CAA-5'@LB@ | |@LB@ 55 36@LB@@LB@@LB@Energy -6.85 kcal/mol@LB@Hybridization Energy -17.1481 kcal/mol@LB@Unfolding Energy - mRNA 4.14332 kcal/mol@LB@Unfolding Energy - sRNA 6.1584 kcal/mol@LB@@LB@Position - mRNA 263 -- 276@LB@Position - sRNA 37 -- 54@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 37 -- 43@LB@ |
178 |
0.02074 |
0.3753 |
b4324 |
uxuR |
-9.92 |
0.017203 |
196 -- 210 |
8 -- 22 |
fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor |
|
_____________195_____________211\n_____________|_______________|\n5'-UAC...ACACA______U________CCACC...UGC-3'\n______________ACACCA_GAAAUCUG\n______________||||||_||||||||\n______________UGUGGU_CUUUAGAC\n3'-UUU...AGCAA______C________UACACAA-5'\n_____________|_______________|\n_____________23______________7\n |
203 -- 209 |
9 -- 15 |
-19.4171 kcal/mol |
1.94047 kcal/mol |
7.56026 kcal/mol |
195 211@LB@ | |@LB@5'-UAC...ACACA U CCACC...UGC-3'@LB@ ACACCA GAAAUCUG@LB@ |||||| ||||||||@LB@ UGUGGU CUUUAGAC@LB@3'-UUU...AGCAA C UACACAA-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -19.4171 kcal/mol@LB@Unfolding Energy - mRNA 1.94047 kcal/mol@LB@Unfolding Energy - sRNA 7.56026 kcal/mol@LB@@LB@Position - mRNA 196 -- 210@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 9 -- 15@LB@ |
181 |
0.0215 |
0.3768 |
b3843 |
ubiD |
-7.81 |
0.067872 |
2 -- 28 |
14 -- 40 |
3-octaprenyl-4-hydroxybenzoate decarboxylase |
|
_____________1____________________________29\n_____________|____________________________|\n__________5'-C_______CAGUACA___AA_________UUGCA...UGG-3'\n______________GCGCUUG________GU__AUACCAGGA\n______________||:|||:________||__|:|||||||\n______________CGUGAAU________CA__UGUGGUCCU\n3'-UUU...UUCUU_______UUUUUAAG__A__________UUAGA...CAA-5'\n_____________|____________________________|\n_____________41___________________________13\n |
22 -- 28 |
14 -- 20 |
-21.9915 kcal/mol |
4.97788 kcal/mol |
9.20436 kcal/mol |
1 29@LB@ | |@LB@ 5'-C CAGUACA AA UUGCA...UGG-3'@LB@ GCGCUUG GU AUACCAGGA@LB@ ||:|||: || |:|||||||@LB@ CGUGAAU CA UGUGGUCCU@LB@3'-UUU...UUCUU UUUUUAAG A UUAGA...CAA-5'@LB@ | |@LB@ 41 13@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -21.9915 kcal/mol@LB@Unfolding Energy - mRNA 4.97788 kcal/mol@LB@Unfolding Energy - sRNA 9.20436 kcal/mol@LB@@LB@Position - mRNA 2 -- 28@LB@Position - sRNA 14 -- 40@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 14 -- 20@LB@ |
187 |
0.02188 |
0.3768 |
b3065 |
rpsU |
-8.54 |
0.042773 |
188 -- 200 |
37 -- 49 |
30S ribosomal subunit protein S21 |
|
_____________187___________201\n_____________|_____________|\n5'-GAC...AUCAA_____________AUGCC...GUC-3'\n______________AGGUGAGAGGCAC\n______________|:|::|||:||||\n______________UUCGUUCUUCGUG\n3'-UUU...ACGAA_____________AAUUU...CAA-5'\n_____________|_____________|\n_____________50____________36\n |
194 -- 200 |
37 -- 43 |
-18.635 kcal/mol |
4.05763 kcal/mol |
6.03369 kcal/mol |
187 201@LB@ | |@LB@5'-GAC...AUCAA AUGCC...GUC-3'@LB@ AGGUGAGAGGCAC@LB@ |:|::|||:||||@LB@ UUCGUUCUUCGUG@LB@3'-UUU...ACGAA AAUUU...CAA-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -18.635 kcal/mol@LB@Unfolding Energy - mRNA 4.05763 kcal/mol@LB@Unfolding Energy - sRNA 6.03369 kcal/mol@LB@@LB@Position - mRNA 188 -- 200@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 37 -- 43@LB@ |