164 |
0.02889 |
0.5559 |
b1512 |
lsrR |
-7.59 |
0.264791 |
265 -- 277 |
71 -- 84 |
lsr operon transcriptional repressor |
|
_____________264____________278\n_____________|______________|\n5'-GCU...GCGGA______________CUAUC...AGA-3'\n______________UCGCG_UGGUUUUA\n______________||:||_|||:||||\n______________AGUGC_ACCGAAAU\n3'-CGC...UUUCA_____A________CAAUA...AAG-5'\n_____________|______________|\n_____________85_____________70\n |
271 -- 277 |
71 -- 77 |
-14.8882 kcal/mol |
6.73904 kcal/mol |
0.5567 kcal/mol |
264 278@LB@ | |@LB@5'-GCU...GCGGA CUAUC...AGA-3'@LB@ UCGCG UGGUUUUA@LB@ ||:|| |||:||||@LB@ AGUGC ACCGAAAU@LB@3'-CGC...UUUCA A CAAUA...AAG-5'@LB@ | |@LB@ 85 70@LB@@LB@@LB@Energy -7.59 kcal/mol@LB@Hybridization Energy -14.8882 kcal/mol@LB@Unfolding Energy - mRNA 6.73904 kcal/mol@LB@Unfolding Energy - sRNA 0.5567 kcal/mol@LB@@LB@Position - mRNA 265 -- 277@LB@Position - sRNA 71 -- 84@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 71 -- 77@LB@ |
172 |
0.03064 |
0.5559 |
b1542 |
ydfI |
-13.08 |
0.030437 |
273 -- 290 |
69 -- 86 |
putative NAD-dependent D-mannonate oxidoreductase |
|
_____________272________________291\n_____________|__________________|\n5'-CUC...GAAUU______UUA_________GCAUU...ACC-3'\n______________GUUCAU___GGCUUUGGU\n______________|||||:___||||||:||\n______________CAAGUG___CCGAAAUCA\n3'-CGC...GUUUU______CAA_________AUAAG...AAG-5'\n_____________|__________________|\n_____________87_________________68\n |
284 -- 290 |
69 -- 75 |
-19.6529 kcal/mol |
6.00837 kcal/mol |
0.568509 kcal/mol |
272 291@LB@ | |@LB@5'-CUC...GAAUU UUA GCAUU...ACC-3'@LB@ GUUCAU GGCUUUGGU@LB@ |||||: ||||||:||@LB@ CAAGUG CCGAAAUCA@LB@3'-CGC...GUUUU CAA AUAAG...AAG-5'@LB@ | |@LB@ 87 68@LB@@LB@@LB@Energy -13.08 kcal/mol@LB@Hybridization Energy -19.6529 kcal/mol@LB@Unfolding Energy - mRNA 6.00837 kcal/mol@LB@Unfolding Energy - sRNA 0.568509 kcal/mol@LB@@LB@Position - mRNA 273 -- 290@LB@Position - sRNA 69 -- 86@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 69 -- 75@LB@ |
155 |
0.02668 |
0.5559 |
b1625 |
cnu |
-8.12 |
0.218326 |
240 -- 246 |
81 -- 87 |
nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor |
|
_____________239_____247\n_____________|_______|\n5'-UUU...AAAUC_______UCGAA...AUC-3'\n______________AGUUCAC\n______________|||||||\n______________UCAAGUG\n3'-CGC...CGUUU_______CAACC...AAG-5'\n_____________|_______|\n_____________88______80\n |
240 -- 246 |
81 -- 87 |
-9.1905 kcal/mol |
0.576286 kcal/mol |
0.494577 kcal/mol |
239 247@LB@ | |@LB@5'-UUU...AAAUC UCGAA...AUC-3'@LB@ AGUUCAC@LB@ |||||||@LB@ UCAAGUG@LB@3'-CGC...CGUUU CAACC...AAG-5'@LB@ | |@LB@ 88 80@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -9.1905 kcal/mol@LB@Unfolding Energy - mRNA 0.576286 kcal/mol@LB@Unfolding Energy - sRNA 0.494577 kcal/mol@LB@@LB@Position - mRNA 240 -- 246@LB@Position - sRNA 81 -- 87@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 81 -- 87@LB@ |
170 |
0.03041 |
0.5559 |
b1629 |
rsxC |
-10.04 |
0.103937 |
197 -- 215 |
64 -- 83 |
SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex |
|
_____________196__________________216\n_____________|____________________|\n5'-UCA...UGGAA___CAU_____A________UCUGC...CCC-3'\n______________CAC____GCUU_AGUUAUUC\n______________|||____||||_||||||||\n______________GUG____CGAA_UCAAUAAG\n3'-CGC...UUCAA___CAAC____A________CUCAA...AAG-5'\n_____________|____________________|\n_____________84___________________63\n |
209 -- 215 |
64 -- 70 |
-13.7112 kcal/mol |
3.10702 kcal/mol |
0.560651 kcal/mol |
196 216@LB@ | |@LB@5'-UCA...UGGAA CAU A UCUGC...CCC-3'@LB@ CAC GCUU AGUUAUUC@LB@ ||| |||| ||||||||@LB@ GUG CGAA UCAAUAAG@LB@3'-CGC...UUCAA CAAC A CUCAA...AAG-5'@LB@ | |@LB@ 84 63@LB@@LB@@LB@Energy -10.04 kcal/mol@LB@Hybridization Energy -13.7112 kcal/mol@LB@Unfolding Energy - mRNA 3.10702 kcal/mol@LB@Unfolding Energy - sRNA 0.560651 kcal/mol@LB@@LB@Position - mRNA 197 -- 215@LB@Position - sRNA 64 -- 83@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 64 -- 70@LB@ |
158 |
0.02721 |
0.5559 |
b1724 |
ydiZ |
-8.58 |
0.183444 |
272 -- 279 |
57 -- 64 |
uncharacterized protein |
|
_____________271______280\n_____________|________|\n5'-UUU...AUUAA________AUAAU...ACG-3'\n______________CGAGUUGA\n______________||||||||\n______________GCUCAACU\n3'-CGC...AAUAA________CUUUG...AAG-5'\n_____________|________|\n_____________65_______56\n |
273 -- 279 |
57 -- 63 |
-11.4752 kcal/mol |
1.7639 kcal/mol |
1.12823 kcal/mol |
271 280@LB@ | |@LB@5'-UUU...AUUAA AUAAU...ACG-3'@LB@ CGAGUUGA@LB@ ||||||||@LB@ GCUCAACU@LB@3'-CGC...AAUAA CUUUG...AAG-5'@LB@ | |@LB@ 65 56@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -11.4752 kcal/mol@LB@Unfolding Energy - mRNA 1.7639 kcal/mol@LB@Unfolding Energy - sRNA 1.12823 kcal/mol@LB@@LB@Position - mRNA 272 -- 279@LB@Position - sRNA 57 -- 64@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 57 -- 63@LB@ |
194 |
0.03409 |
0.5559 |
b1836 |
yebV |
-7.98 |
0.229830 |
12 -- 23 |
77 -- 87 |
uncharacterized protein |
|
_____________11___________24\n_____________|____________|\n5'-CCA...GGAUU________A___AAAAA...CUG-3'\n______________GGUUCGCG_UUG\n______________:||||:||_|||\n______________UCAAGUGC_AAC\n3'-CGC...CGUUU____________CGAAA...AAG-5'\n_____________|____________|\n_____________88___________76\n |
13 -- 19 |
80 -- 86 |
-12.5297 kcal/mol |
4.04369 kcal/mol |
0.505155 kcal/mol |
11 24@LB@ | |@LB@5'-CCA...GGAUU A AAAAA...CUG-3'@LB@ GGUUCGCG UUG@LB@ :||||:|| |||@LB@ UCAAGUGC AAC@LB@3'-CGC...CGUUU CGAAA...AAG-5'@LB@ | |@LB@ 88 76@LB@@LB@@LB@Energy -7.98 kcal/mol@LB@Hybridization Energy -12.5297 kcal/mol@LB@Unfolding Energy - mRNA 4.04369 kcal/mol@LB@Unfolding Energy - sRNA 0.505155 kcal/mol@LB@@LB@Position - mRNA 12 -- 23@LB@Position - sRNA 77 -- 87@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 80 -- 86@LB@ |
185 |
0.03283 |
0.5559 |
b1937 |
fliE |
-12.05 |
0.046361 |
209 -- 229 |
14 -- 35 |
flagellar basal-body component |
|
_____________208____________________230\n_____________|______________________|\n5'-CUG...UCAGC___A_______AUU________UAUCA...GUU-3'\n______________GAU__CAGGGG___GAAGGGGU\n______________||:__||:|||___:|||:|||\n______________CUG__GUUCCC___UUUCUCCA\n3'-CGC...CGUCA___AA______AAU________CGGCG...AAG-5'\n_____________|______________________|\n_____________36_____________________13\n |
223 -- 229 |
14 -- 20 |
-20.5154 kcal/mol |
5.13678 kcal/mol |
3.33183 kcal/mol |
208 230@LB@ | |@LB@5'-CUG...UCAGC A AUU UAUCA...GUU-3'@LB@ GAU CAGGGG GAAGGGGU@LB@ ||: ||:||| :|||:|||@LB@ CUG GUUCCC UUUCUCCA@LB@3'-CGC...CGUCA AA AAU CGGCG...AAG-5'@LB@ | |@LB@ 36 13@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -20.5154 kcal/mol@LB@Unfolding Energy - mRNA 5.13678 kcal/mol@LB@Unfolding Energy - sRNA 3.33183 kcal/mol@LB@@LB@Position - mRNA 209 -- 229@LB@Position - sRNA 14 -- 35@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 14 -- 20@LB@ |
180 |
0.03162 |
0.5559 |
b1941 |
fliI |
-9.97 |
0.106944 |
57 -- 70 |
74 -- 88 |
flagellum-specific ATP synthase |
|
_____________56______________71\n_____________|_______________|\n5'-CUG...ACCUU________A______GGCGC...GCG-3'\n______________AAGUUUGC__UGGCU\n______________|||||::|__|||||\n______________UUCAAGUG__ACCGA\n3'-CGC...GCGUU________CA_____AAUCA...AAG-5'\n_____________|_______________|\n_____________89______________73\n |
58 -- 64 |
81 -- 87 |
-13.0478 kcal/mol |
2.55971 kcal/mol |
0.516514 kcal/mol |
56 71@LB@ | |@LB@5'-CUG...ACCUU A GGCGC...GCG-3'@LB@ AAGUUUGC UGGCU@LB@ |||||::| |||||@LB@ UUCAAGUG ACCGA@LB@3'-CGC...GCGUU CA AAUCA...AAG-5'@LB@ | |@LB@ 89 73@LB@@LB@@LB@Energy -9.97 kcal/mol@LB@Hybridization Energy -13.0478 kcal/mol@LB@Unfolding Energy - mRNA 2.55971 kcal/mol@LB@Unfolding Energy - sRNA 0.516514 kcal/mol@LB@@LB@Position - mRNA 57 -- 70@LB@Position - sRNA 74 -- 88@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 81 -- 87@LB@ |
187 |
0.03332 |
0.5559 |
b2019 |
hisG |
-10.76 |
0.077976 |
170 -- 191 |
15 -- 34 |
ATP phosphoribosyltransferase |
|
_____________169____________________192\n_____________|______________________|\n5'-UUU...AUAAC_G_____ACA____U_______AAUAA...AUC-3'\n______________G_UUCAG___GGUU_AAAGAGG\n______________:_||||:___||||_|||||||\n______________U_AAGUU___CCAA_UUUCUCC\n3'-CGC...GUCAC_G_____C______U_______ACGGC...AAG-5'\n_____________|______________________|\n_____________35_____________________14\n |
185 -- 191 |
15 -- 21 |
-17.0816 kcal/mol |
2.9882 kcal/mol |
3.33044 kcal/mol |
169 192@LB@ | |@LB@5'-UUU...AUAAC G ACA U AAUAA...AUC-3'@LB@ G UUCAG GGUU AAAGAGG@LB@ : ||||: |||| |||||||@LB@ U AAGUU CCAA UUUCUCC@LB@3'-CGC...GUCAC G C U ACGGC...AAG-5'@LB@ | |@LB@ 35 14@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -17.0816 kcal/mol@LB@Unfolding Energy - mRNA 2.9882 kcal/mol@LB@Unfolding Energy - sRNA 3.33044 kcal/mol@LB@@LB@Position - mRNA 170 -- 191@LB@Position - sRNA 15 -- 34@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 15 -- 21@LB@ |
191 |
0.03353 |
0.5559 |
b2129 |
yehX |
-7.36 |
0.287226 |
59 -- 67 |
69 -- 77 |
putative ABC transporter ATPase |
|
_____________58________68\n_____________|_________|\n5'-GGU...CAGGC_________GCGCU...UUG-3'\n______________GGUUUUGGU\n______________||:|||:||\n______________CCGAAAUCA\n3'-CGC...UGCAA_________AUAAG...AAG-5'\n_____________|_________|\n_____________78________68\n |
61 -- 67 |
69 -- 75 |
-10.3561 kcal/mol |
2.74802 kcal/mol |
0.243235 kcal/mol |
58 68@LB@ | |@LB@5'-GGU...CAGGC GCGCU...UUG-3'@LB@ GGUUUUGGU@LB@ ||:|||:||@LB@ CCGAAAUCA@LB@3'-CGC...UGCAA AUAAG...AAG-5'@LB@ | |@LB@ 78 68@LB@@LB@@LB@Energy -7.36 kcal/mol@LB@Hybridization Energy -10.3561 kcal/mol@LB@Unfolding Energy - mRNA 2.74802 kcal/mol@LB@Unfolding Energy - sRNA 0.243235 kcal/mol@LB@@LB@Position - mRNA 59 -- 67@LB@Position - sRNA 69 -- 77@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 69 -- 75@LB@ |