| 135 |
0.01531 |
0.3774 |
b3224 |
nanT |
-10.34 |
0.103537 |
56 -- 77 |
28 -- 54 |
sialic acid transporter |
|
_____________55__________________________78\n_____________|___________________________|\n5'-CGC...CUGAA_____________________UU____CAAGA...GUU-3'\n______________GGC___GC__UGGCCCAGCAG__GAUG\n______________|||___||__|||||||:|||__:||:\n______________CCG___CG__ACCGGGUUGUC__UUAU\n3'-UUU...AGUCA___UUA__UU___________UU____UUUAG...UUG-5'\n_____________|___________________________|\n_____________55__________________________27\n |
63 -- 69 |
36 -- 42 |
-28.0045 kcal/mol |
8.68418 kcal/mol |
8.98285 kcal/mol |
55 78@LB@ | |@LB@5'-CGC...CUGAA UU CAAGA...GUU-3'@LB@ GGC GC UGGCCCAGCAG GAUG@LB@ ||| || |||||||:||| :||:@LB@ CCG CG ACCGGGUUGUC UUAU@LB@3'-UUU...AGUCA UUA UU UU UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -28.0045 kcal/mol@LB@Unfolding Energy - mRNA 8.68418 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 56 -- 77@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 154 |
0.01792 |
0.3828 |
b2610 |
ffh |
-8.53 |
0.234957 |
246 -- 258 |
48 -- 60 |
Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) |
|
_____________245___________259\n_____________|_____________|\n5'-AGG...GCAAU_________C___GACGC...AAG-3'\n______________AUCAGUGGC_GUG\n______________|||||||||_:||\n______________UAGUCACCG_UAC\n3'-UUU...CCUUU_________U___GUUAC...UUG-5'\n_____________|_____________|\n_____________61____________47\n |
248 -- 254 |
52 -- 58 |
-18.214 kcal/mol |
6.29175 kcal/mol |
3.39422 kcal/mol |
245 259@LB@ | |@LB@5'-AGG...GCAAU C GACGC...AAG-3'@LB@ AUCAGUGGC GUG@LB@ ||||||||| :||@LB@ UAGUCACCG UAC@LB@3'-UUU...CCUUU U GUUAC...UUG-5'@LB@ | |@LB@ 61 47@LB@@LB@@LB@Energy -8.53 kcal/mol@LB@Hybridization Energy -18.214 kcal/mol@LB@Unfolding Energy - mRNA 6.29175 kcal/mol@LB@Unfolding Energy - sRNA 3.39422 kcal/mol@LB@@LB@Position - mRNA 246 -- 258@LB@Position - sRNA 48 -- 60@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 181 |
0.02239 |
0.4143 |
b2894 |
xerD |
-11.89 |
0.046874 |
147 -- 194 |
9 -- 61 |
site-specific tyrosine recombinase |
|
_____________146_____________________________________________________195\n_____________|_______________________________________________________|\n5'-ACC...GCUUU_____C____________AA___A_______UC_______GA_____C_______GCGCA...UGU-3'\n______________AGUCA__GGCA___CAAU__GGC_UAAUGGA_____AAAU__GUGAC_AUAAGGG\n______________|:|||__||||___||||__|||_:||::||_____||||__|||||_||||:||\n______________UUAGU__CCGU___GUUA__CCG_GUUGUCU_____UUUA__CACUG_UAUUUCC\n3'-UUU...ACCUU_____CA____UAC_________G_______UUUAU____GA_____U_______GUAUAUUG-5'\n_____________|_______________________________________________________|\n_____________62______________________________________________________8\n |
188 -- 194 |
9 -- 15 |
-33.0704 kcal/mol |
10.0398 kcal/mol |
11.1358 kcal/mol |
146 195@LB@ | |@LB@5'-ACC...GCUUU C AA A UC GA C GCGCA...UGU-3'@LB@ AGUCA GGCA CAAU GGC UAAUGGA AAAU GUGAC AUAAGGG@LB@ |:||| |||| |||| ||| :||::|| |||| ||||| ||||:||@LB@ UUAGU CCGU GUUA CCG GUUGUCU UUUA CACUG UAUUUCC@LB@3'-UUU...ACCUU CA UAC G UUUAU GA U GUAUAUUG-5'@LB@ | |@LB@ 62 8@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -33.0704 kcal/mol@LB@Unfolding Energy - mRNA 10.0398 kcal/mol@LB@Unfolding Energy - sRNA 11.1358 kcal/mol@LB@@LB@Position - mRNA 147 -- 194@LB@Position - sRNA 9 -- 61@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 44 |
0.002732 |
0.2088 |
b3450 |
ugpC |
-10.48 |
0.096645 |
106 -- 116 |
47 -- 57 |
sn-glycerol-3-phosphate ABC transporter ATPase |
|
_____________105_________117\n_____________|___________|\n5'-GUG...GUGAU___________UGUUA...UCG-3'\n______________GGUGGCGAUGU\n______________:|||||:|||:\n______________UCACCGUUACG\n3'-UUU...UUUAG___________UUACC...UUG-5'\n_____________|___________|\n_____________58__________46\n |
110 -- 116 |
47 -- 53 |
-17.083 kcal/mol |
3.56469 kcal/mol |
3.03952 kcal/mol |
105 117@LB@ | |@LB@5'-GUG...GUGAU UGUUA...UCG-3'@LB@ GGUGGCGAUGU@LB@ :|||||:|||:@LB@ UCACCGUUACG@LB@3'-UUU...UUUAG UUACC...UUG-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -17.083 kcal/mol@LB@Unfolding Energy - mRNA 3.56469 kcal/mol@LB@Unfolding Energy - sRNA 3.03952 kcal/mol@LB@@LB@Position - mRNA 106 -- 116@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 89 |
0.007733 |
0.2889 |
b3426 |
glpD |
-8.48 |
0.239884 |
186 -- 234 |
7 -- 64 |
sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding |
|
_____________185__________________________________________________________235\n_____________|____________________________________________________________|\n5'-AAC...CGAAA_U____G________________AAA________UCU_______________________GCAUC...AGG-3'\n______________G_GAAU_AG_GGCA__GC_AUGG___CCAA_AGA______GA_UUGUGAUAG__GGGGCG\n______________|_:|||_||_||||__||_||||___||||_|||______:|_:|||||:|:__::|||:\n______________C_UUUA_UC_CCGU__CG_UACC___GGUU_UCU______UU_GACACUGUU__UUCCGU\n3'-UUU...ACAAC_U____G__A____UA__U____G______G___UUUAUU__A_________AU______AUAUUG-5'\n_____________|____________________________________________________________|\n_____________65___________________________________________________________6\n |
222 -- 228 |
15 -- 21 |
-34.508 kcal/mol |
13.8761 kcal/mol |
12.1536 kcal/mol |
185 235@LB@ | |@LB@5'-AAC...CGAAA U G AAA UCU GCAUC...AGG-3'@LB@ G GAAU AG GGCA GC AUGG CCAA AGA GA UUGUGAUAG GGGGCG@LB@ | :||| || |||| || |||| |||| ||| :| :|||||:|: ::|||:@LB@ C UUUA UC CCGU CG UACC GGUU UCU UU GACACUGUU UUCCGU@LB@3'-UUU...ACAAC U G A UA U G G UUUAUU A AU AUAUUG-5'@LB@ | |@LB@ 65 6@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -34.508 kcal/mol@LB@Unfolding Energy - mRNA 13.8761 kcal/mol@LB@Unfolding Energy - sRNA 12.1536 kcal/mol@LB@@LB@Position - mRNA 186 -- 234@LB@Position - sRNA 7 -- 64@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 71 |
0.005918 |
0.2791 |
b4348 |
hsdS |
-11.53 |
0.056880 |
66 -- 85 |
42 -- 60 |
specificity determinant for hsdM and hsdR |
|
_____________65___________________86\n_____________|____________________|\n5'-CUG...GAUGU_____C_____AA_______GCGAA...UAA-3'\n______________AUUAG_GGCAG__GCGAUGG\n______________||:||_||||:__||:||||\n______________UAGUC_CCGUU__CGUUACC\n3'-UUU...CCUUU_____A_____A________GGGUU...UUG-5'\n_____________|____________________|\n_____________61___________________41\n |
79 -- 85 |
42 -- 48 |
-21.0522 kcal/mol |
5.82821 kcal/mol |
3.69672 kcal/mol |
65 86@LB@ | |@LB@5'-CUG...GAUGU C AA GCGAA...UAA-3'@LB@ AUUAG GGCAG GCGAUGG@LB@ ||:|| ||||: ||:||||@LB@ UAGUC CCGUU CGUUACC@LB@3'-UUU...CCUUU A A GGGUU...UUG-5'@LB@ | |@LB@ 61 41@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -21.0522 kcal/mol@LB@Unfolding Energy - mRNA 5.82821 kcal/mol@LB@Unfolding Energy - sRNA 3.69672 kcal/mol@LB@@LB@Position - mRNA 66 -- 85@LB@Position - sRNA 42 -- 60@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 193 |
0.02433 |
0.4239 |
b1125 |
potB |
-7.71 |
0.326143 |
48 -- 60 |
50 -- 66 |
spermidine/putrescine ABC transporter permease |
|
_____________47________________61\n_____________|_________________|\n5'-UCG...UGAAC_________________GAUGG...UUG-3'\n______________UGGAAAA____UGGCAA\n______________|||||||____||||||\n______________ACCUUUU____ACCGUU\n3'-UUU...AUACA_______AGUC______ACGUU...UUG-5'\n_____________|_________________|\n_____________67________________49\n |
48 -- 54 |
60 -- 66 |
-13.9172 kcal/mol |
3.09187 kcal/mol |
3.11877 kcal/mol |
47 61@LB@ | |@LB@5'-UCG...UGAAC GAUGG...UUG-3'@LB@ UGGAAAA UGGCAA@LB@ ||||||| ||||||@LB@ ACCUUUU ACCGUU@LB@3'-UUU...AUACA AGUC ACGUU...UUG-5'@LB@ | |@LB@ 67 49@LB@@LB@@LB@Energy -7.71 kcal/mol@LB@Hybridization Energy -13.9172 kcal/mol@LB@Unfolding Energy - mRNA 3.09187 kcal/mol@LB@Unfolding Energy - sRNA 3.11877 kcal/mol@LB@@LB@Position - mRNA 48 -- 60@LB@Position - sRNA 50 -- 66@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 180 |
0.02233 |
0.4143 |
b0435 |
bolA |
-10.38 |
0.101210 |
35 -- 46 |
39 -- 51 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________34____________47\n_____________|_____________|\n5'-UGA...ACACU_____________GUGUU...CCG-3'\n______________GAUGCGA_GGCCU\n______________:||||:|_||||:\n______________UUACGUU_CCGGG\n3'-UUU...CACCG_______A_____UUGUC...UUG-5'\n_____________|_____________|\n_____________52____________38\n |
35 -- 41 |
45 -- 51 |
-16.689 kcal/mol |
1.55914 kcal/mol |
4.74571 kcal/mol |
34 47@LB@ | |@LB@5'-UGA...ACACU GUGUU...CCG-3'@LB@ GAUGCGA GGCCU@LB@ :||||:| ||||:@LB@ UUACGUU CCGGG@LB@3'-UUU...CACCG A UUGUC...UUG-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -16.689 kcal/mol@LB@Unfolding Energy - mRNA 1.55914 kcal/mol@LB@Unfolding Energy - sRNA 4.74571 kcal/mol@LB@@LB@Position - mRNA 35 -- 46@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 189 |
0.02329 |
0.4145 |
b1823 |
cspC |
-8.37 |
0.250499 |
214 -- 248 |
8 -- 63 |
stress protein member of the CspA-family |
|
_____________213______________________________________________________249\n_____________|________________________________________________________|\n5'-UAU...GAUUA____________UA__________________________________________UUUGG...UCU-3'\n______________AAGGUCA__GGU_____AGUGGUUCAAC________GAGUC________UAAAGGU\n______________||::|||__||:_____|:|||::||||________:|:||________||||||:\n______________UUUUAGU__CCG_____UUACCGGGUUG________UUUAG________AUUUCCG\n3'-UUU...CAACC_______CA___UUACG___________UCUUUUAU_____ACACUGUU_______UAUAUUG-5'\n_____________|________________________________________________________|\n_____________64_______________________________________________________7\n |
242 -- 248 |
8 -- 14 |
-25.9028 kcal/mol |
5.39828 kcal/mol |
12.1311 kcal/mol |
213 249@LB@ | |@LB@5'-UAU...GAUUA UA UUUGG...UCU-3'@LB@ AAGGUCA GGU AGUGGUUCAAC GAGUC UAAAGGU@LB@ ||::||| ||: |:|||::|||| :|:|| ||||||:@LB@ UUUUAGU CCG UUACCGGGUUG UUUAG AUUUCCG@LB@3'-UUU...CAACC CA UUACG UCUUUUAU ACACUGUU UAUAUUG-5'@LB@ | |@LB@ 64 7@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -25.9028 kcal/mol@LB@Unfolding Energy - mRNA 5.39828 kcal/mol@LB@Unfolding Energy - sRNA 12.1311 kcal/mol@LB@@LB@Position - mRNA 214 -- 248@LB@Position - sRNA 8 -- 63@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 103 |
0.009615 |
0.3118 |
b4045 |
yjbJ |
-8.83 |
0.207064 |
48 -- 67 |
39 -- 60 |
stress-induced protein UPF0337 family |
|
_____________47______________________68\n_____________|_______________________|\n5'-CGU...GCGGC____C_______________A__UGGUU...AAG-3'\n______________GUCA_UGGC___GCAAUGGU_CC\n______________:|||_||||___|||||||:_||\n______________UAGU_ACCG___CGUUACCG_GG\n3'-UUU...CCUUU____C____UUA___________UUGUC...UUG-5'\n_____________|_______________________|\n_____________61______________________38\n |
58 -- 64 |
41 -- 47 |
-22.6105 kcal/mol |
7.1744 kcal/mol |
6.61009 kcal/mol |
47 68@LB@ | |@LB@5'-CGU...GCGGC C A UGGUU...AAG-3'@LB@ GUCA UGGC GCAAUGGU CC@LB@ :||| |||| |||||||: ||@LB@ UAGU ACCG CGUUACCG GG@LB@3'-UUU...CCUUU C UUA UUGUC...UUG-5'@LB@ | |@LB@ 61 38@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -22.6105 kcal/mol@LB@Unfolding Energy - mRNA 7.1744 kcal/mol@LB@Unfolding Energy - sRNA 6.61009 kcal/mol@LB@@LB@Position - mRNA 48 -- 67@LB@Position - sRNA 39 -- 60@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 41 -- 47@LB@ |
