173 |
0.01972 |
0.3669 |
b3426 |
glpD |
-5.91 |
0.203159 |
207 -- 224 |
3 -- 20 |
sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding |
|
_____________206_________________225\n_____________|___________________|\n5'-AAC...UGGAA____A_________U____AUAGG...AGG-3'\n______________ACCA__AGAUCUGA_UGUG\n______________||||__|:||||||_||||\n______________UGGU__UUUAGACU_ACAC\n3'-UUU...CAAUG____CC_____________AA-5'\n_____________|___________________|\n_____________21__________________2\n |
213 -- 219 |
7 -- 13 |
-16.1802 kcal/mol |
2.74973 kcal/mol |
7.52321 kcal/mol |
206 225@LB@ | |@LB@5'-AAC...UGGAA A U AUAGG...AGG-3'@LB@ ACCA AGAUCUGA UGUG@LB@ |||| |:|||||| ||||@LB@ UGGU UUUAGACU ACAC@LB@3'-UUU...CAAUG CC AA-5'@LB@ | |@LB@ 21 2@LB@@LB@@LB@Energy -5.91 kcal/mol@LB@Hybridization Energy -16.1802 kcal/mol@LB@Unfolding Energy - mRNA 2.74973 kcal/mol@LB@Unfolding Energy - sRNA 7.52321 kcal/mol@LB@@LB@Position - mRNA 207 -- 224@LB@Position - sRNA 3 -- 20@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 7 -- 13@LB@ |
99 |
0.007347 |
0.239 |
b4348 |
hsdS |
-4.18 |
0.460078 |
133 -- 139 |
70 -- 76 |
specificity determinant for hsdM and hsdR |
|
_____________132_____140\n_____________|_______|\n5'-CUG...GUGAA_______CGAGC...UAA-3'\n______________CUGGGGG\n______________|||:|||\n______________GACUCCC\n3'-UUU...GCUGG_______CCAGC...CAA-5'\n_____________|_______|\n_____________77______69\n |
133 -- 139 |
70 -- 76 |
-10.3039 kcal/mol |
2.51492 kcal/mol |
3.60488 kcal/mol |
132 140@LB@ | |@LB@5'-CUG...GUGAA CGAGC...UAA-3'@LB@ CUGGGGG@LB@ |||:|||@LB@ GACUCCC@LB@3'-UUU...GCUGG CCAGC...CAA-5'@LB@ | |@LB@ 77 69@LB@@LB@@LB@Energy -4.18 kcal/mol@LB@Hybridization Energy -10.3039 kcal/mol@LB@Unfolding Energy - mRNA 2.51492 kcal/mol@LB@Unfolding Energy - sRNA 3.60488 kcal/mol@LB@@LB@Position - mRNA 133 -- 139@LB@Position - sRNA 70 -- 76@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 70 -- 76@LB@ |
29 |
0.000834 |
0.09021 |
b2798 |
ygdG |
-11.41 |
0.005967 |
211 -- 245 |
24 -- 57 |
Ssb-binding protein misidentified as ExoIX |
|
_____________210_________________________________246\n_____________|___________________________________|\n5'-CCA...UGUUC_________UUGUC__U_____GAAUCUU______CGCAU...UCG-3'\n______________AUUUGCUUA_____GA_GCACU_______AUUCGU\n______________|:|||||||_____||_|||||_______||||||\n______________UGAACGAAU_____CU_CGUGA_______UAAGCA\n3'-UUU...UACUU_________UCGUU__U_____AUUUUU_______AUGUG...CAA-5'\n_____________|___________________________________|\n_____________58__________________________________23\n |
213 -- 219 |
49 -- 55 |
-23.2646 kcal/mol |
5.57825 kcal/mol |
6.27607 kcal/mol |
210 246@LB@ | |@LB@5'-CCA...UGUUC UUGUC U GAAUCUU CGCAU...UCG-3'@LB@ AUUUGCUUA GA GCACU AUUCGU@LB@ |:||||||| || ||||| ||||||@LB@ UGAACGAAU CU CGUGA UAAGCA@LB@3'-UUU...UACUU UCGUU U AUUUUU AUGUG...CAA-5'@LB@ | |@LB@ 58 23@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -23.2646 kcal/mol@LB@Unfolding Energy - mRNA 5.57825 kcal/mol@LB@Unfolding Energy - sRNA 6.27607 kcal/mol@LB@@LB@Position - mRNA 211 -- 245@LB@Position - sRNA 24 -- 57@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 49 -- 55@LB@ |
190 |
0.02239 |
0.3796 |
b0724 |
sdhB |
-6.89 |
0.117799 |
143 -- 176 |
24 -- 60 |
succinate dehydrogenase FeS subunit |
|
_____________142____________________________________177\n_____________|______________________________________|\n5'-UUU...GAACC_________GCCC____UUCC____C____________ACUUA...UGA-3'\n______________GAAAC_UGC____GGCA_____CGC___GAAGAUUCGU\n______________|||||_|||____:|||_____|:|___:||:||||||\n______________CUUUG_ACG____UCGU_____GUG___UUUUUAAGCA\n3'-UUU...CCCUA_____A___AAU_____UCUUC___AAU__________AUGUG...CAA-5'\n_____________|______________________________________|\n_____________61_____________________________________23\n |
170 -- 176 |
24 -- 30 |
-22.9017 kcal/mol |
9.73835 kcal/mol |
6.27609 kcal/mol |
142 177@LB@ | |@LB@5'-UUU...GAACC GCCC UUCC C ACUUA...UGA-3'@LB@ GAAAC UGC GGCA CGC GAAGAUUCGU@LB@ ||||| ||| :||| |:| :||:||||||@LB@ CUUUG ACG UCGU GUG UUUUUAAGCA@LB@3'-UUU...CCCUA A AAU UCUUC AAU AUGUG...CAA-5'@LB@ | |@LB@ 61 23@LB@@LB@@LB@Energy -6.89 kcal/mol@LB@Hybridization Energy -22.9017 kcal/mol@LB@Unfolding Energy - mRNA 9.73835 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 143 -- 176@LB@Position - sRNA 24 -- 60@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 24 -- 30@LB@ |
100 |
0.007523 |
0.2423 |
b1744 |
astE |
-9.81 |
0.018546 |
117 -- 135 |
36 -- 53 |
succinylglutamate desuccinylase |
|
_____________116_________________136\n_____________|___________________|\n5'-GGU...GCUGC__GAA______________GGAUG...UGC-3'\n______________GC___GGGCGGGAAGCACU\n______________||___::||::||||||||\n______________CG___UUCGUUCUUCGUGA\n3'-UUU...UUGAA__AA_______________AUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________35\n |
129 -- 135 |
36 -- 42 |
-22.0517 kcal/mol |
6.14291 kcal/mol |
6.10238 kcal/mol |
116 136@LB@ | |@LB@5'-GGU...GCUGC GAA GGAUG...UGC-3'@LB@ GC GGGCGGGAAGCACU@LB@ || ::||::||||||||@LB@ CG UUCGUUCUUCGUGA@LB@3'-UUU...UUGAA AA AUUUU...CAA-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -9.81 kcal/mol@LB@Hybridization Energy -22.0517 kcal/mol@LB@Unfolding Energy - mRNA 6.14291 kcal/mol@LB@Unfolding Energy - sRNA 6.10238 kcal/mol@LB@@LB@Position - mRNA 117 -- 135@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 36 -- 42@LB@ |
104 |
0.008606 |
0.2665 |
b0956 |
matP |
-4.56 |
0.392859 |
215 -- 228 |
25 -- 38 |
Ter macrodomain organizer matS-binding protein |
|
_____________214____________229\n_____________|______________|\n5'-UUU...CAACA_________UC___AAAGC...AAG-3'\n______________ACUUGAAAA__UUG\n______________||||:||||__|:|\n______________UGAAUUUUU__AGC\n3'-UUU...CUUCG_________UA___AAUGU...CAA-5'\n_____________|______________|\n_____________39_____________24\n |
216 -- 222 |
31 -- 37 |
-8.38693 kcal/mol |
2.39574 kcal/mol |
1.4343 kcal/mol |
214 229@LB@ | |@LB@5'-UUU...CAACA UC AAAGC...AAG-3'@LB@ ACUUGAAAA UUG@LB@ ||||:|||| |:|@LB@ UGAAUUUUU AGC@LB@3'-UUU...CUUCG UA AAUGU...CAA-5'@LB@ | |@LB@ 39 24@LB@@LB@@LB@Energy -4.56 kcal/mol@LB@Hybridization Energy -8.38693 kcal/mol@LB@Unfolding Energy - mRNA 2.39574 kcal/mol@LB@Unfolding Energy - sRNA 1.4343 kcal/mol@LB@@LB@Position - mRNA 215 -- 228@LB@Position - sRNA 25 -- 38@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 31 -- 37@LB@ |
26 |
0.0007705 |
0.09021 |
b3991 |
thiG |
-9.33 |
0.025562 |
246 -- 261 |
25 -- 41 |
thiamine biosynthesis ThiGH complex subunit |
|
_____________245_______________262\n_____________|_________________|\n5'-GCA...UUACC_____A___________CUUCU...CCG-3'\n______________GGCAC__GGGAAAUUCG\n______________:||||__:::|||||||\n______________UCGUG__UUUUUUAAGC\n3'-UUU...GUUCU_____AA__________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
255 -- 261 |
25 -- 31 |
-14.087 kcal/mol |
3.10801 kcal/mol |
1.64839 kcal/mol |
245 262@LB@ | |@LB@5'-GCA...UUACC A CUUCU...CCG-3'@LB@ GGCAC GGGAAAUUCG@LB@ :|||| :::|||||||@LB@ UCGUG UUUUUUAAGC@LB@3'-UUU...GUUCU AA AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -14.087 kcal/mol@LB@Unfolding Energy - mRNA 3.10801 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 246 -- 261@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 25 -- 31@LB@ |
174 |
0.01992 |
0.3669 |
b1098 |
tmk |
-8.25 |
0.051647 |
183 -- 196 |
29 -- 42 |
thymidylate kinase |
|
_____________182____________197\n_____________|______________|\n5'-UAA...UCUGA______________AAAAA...GCG-3'\n______________AAGUGCUUAAGGAA\n______________|||::|||||::||\n______________UUCGUGAAUUUUUU\n3'-UUU...CGUUC______________AAGCA...CAA-5'\n_____________|______________|\n_____________43_____________28\n |
190 -- 196 |
29 -- 35 |
-11.8447 kcal/mol |
1.97362 kcal/mol |
1.62369 kcal/mol |
182 197@LB@ | |@LB@5'-UAA...UCUGA AAAAA...GCG-3'@LB@ AAGUGCUUAAGGAA@LB@ |||::|||||::||@LB@ UUCGUGAAUUUUUU@LB@3'-UUU...CGUUC AAGCA...CAA-5'@LB@ | |@LB@ 43 28@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -11.8447 kcal/mol@LB@Unfolding Energy - mRNA 1.97362 kcal/mol@LB@Unfolding Energy - sRNA 1.62369 kcal/mol@LB@@LB@Position - mRNA 183 -- 196@LB@Position - sRNA 29 -- 42@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 29 -- 35@LB@ |
67 |
0.003475 |
0.1645 |
b0416 |
nusB |
-6.41 |
0.154688 |
140 -- 154 |
27 -- 40 |
transcription antitermination protein |
|
_____________139_____________155\n_____________|_______________|\n5'-AAG...UGACC__________U____AAUGU...AGU-3'\n______________GCGCUUGAAA_GAUU\n______________||:|||:|||_:|||\n______________CGUGAAUUUU_UUAA\n3'-UUU...UUCUU_______________GCAAU...CAA-5'\n_____________|_______________|\n_____________41______________26\n |
142 -- 148 |
32 -- 38 |
-12.213 kcal/mol |
4.16264 kcal/mol |
1.6425 kcal/mol |
139 155@LB@ | |@LB@5'-AAG...UGACC U AAUGU...AGU-3'@LB@ GCGCUUGAAA GAUU@LB@ ||:|||:||| :|||@LB@ CGUGAAUUUU UUAA@LB@3'-UUU...UUCUU GCAAU...CAA-5'@LB@ | |@LB@ 41 26@LB@@LB@@LB@Energy -6.41 kcal/mol@LB@Hybridization Energy -12.213 kcal/mol@LB@Unfolding Energy - mRNA 4.16264 kcal/mol@LB@Unfolding Energy - sRNA 1.6425 kcal/mol@LB@@LB@Position - mRNA 140 -- 154@LB@Position - sRNA 27 -- 40@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 32 -- 38@LB@ |
195 |
0.02349 |
0.3864 |
b3982 |
nusG |
-7.66 |
0.074558 |
21 -- 55 |
24 -- 55 |
transcription termination factor |
|
_____________20__________________________________56\n_____________|___________________________________|\n5'-GAC...UACCG______UU__CCGU_______GUACC_____C___AAGGU...ACA-3'\n______________UUGCUU__GC____GAAGCGC_____GAAGU_CGU\n______________||||||__||____|||||:|_____:||:|_|||\n______________AACGAA__CG____CUUCGUG_____UUUUA_GCA\n3'-UUU...CUUUG______UU__UU_________AAUU______A___AUGUG...CAA-5'\n_____________|___________________________________|\n_____________56__________________________________23\n |
35 -- 41 |
37 -- 43 |
-23.8738 kcal/mol |
9.94572 kcal/mol |
6.27216 kcal/mol |
20 56@LB@ | |@LB@5'-GAC...UACCG UU CCGU GUACC C AAGGU...ACA-3'@LB@ UUGCUU GC GAAGCGC GAAGU CGU@LB@ |||||| || |||||:| :||:| |||@LB@ AACGAA CG CUUCGUG UUUUA GCA@LB@3'-UUU...CUUUG UU UU AAUU A AUGUG...CAA-5'@LB@ | |@LB@ 56 23@LB@@LB@@LB@Energy -7.66 kcal/mol@LB@Hybridization Energy -23.8738 kcal/mol@LB@Unfolding Energy - mRNA 9.94572 kcal/mol@LB@Unfolding Energy - sRNA 6.27216 kcal/mol@LB@@LB@Position - mRNA 21 -- 55@LB@Position - sRNA 24 -- 55@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 37 -- 43@LB@ |