| 142 |
0.006672 |
0.1579 |
b3168 |
infB |
-12.04 |
0.064271 |
249 -- 267 |
29 -- 45 |
translation initiation factor IF-2 |
|
_____________248_________________268\n_____________|___________________|\n5'-AAG...CCUCC____AACG___________AAUUU...CUG-3'\n______________GUGG____CCUGGUACAGC\n______________||||____|||||||||||\n______________CACC____GGACCAUGUCG\n3'-UUU...UCCUC____AA_____________AUCGU...UCG-5'\n_____________|___________________|\n_____________46__________________28\n |
261 -- 267 |
29 -- 35 |
-27.2517 kcal/mol |
10.9083 kcal/mol |
4.30037 kcal/mol |
248 268@LB@ | |@LB@5'-AAG...CCUCC AACG AAUUU...CUG-3'@LB@ GUGG CCUGGUACAGC@LB@ |||| |||||||||||@LB@ CACC GGACCAUGUCG@LB@3'-UUU...UCCUC AA AUCGU...UCG-5'@LB@ | |@LB@ 46 28@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -27.2517 kcal/mol@LB@Unfolding Energy - mRNA 10.9083 kcal/mol@LB@Unfolding Energy - sRNA 4.30037 kcal/mol@LB@@LB@Position - mRNA 249 -- 267@LB@Position - sRNA 29 -- 45@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 106 |
0.003955 |
0.1254 |
b1767 |
ansA |
-7.74 |
0.383564 |
250 -- 272 |
11 -- 34 |
cytoplasmic L-asparaginase 1 |
|
_____________249______________________273\n_____________|________________________|\n5'-UGC...CGGGA______GUUCCGAGCA________AUACC...GCC-3'\n______________UGCAGC___________GGGUUAU\n______________|:||||___________|||||||\n______________AUGUCG___________CCCAAUA\n3'-UUU...GGACC______AUCGUAAAAUA_______CAAAA...UCG-5'\n_____________|________________________|\n_____________35_______________________10\n |
266 -- 272 |
11 -- 17 |
-16.5796 kcal/mol |
7.36686 kcal/mol |
1.47152 kcal/mol |
249 273@LB@ | |@LB@5'-UGC...CGGGA GUUCCGAGCA AUACC...GCC-3'@LB@ UGCAGC GGGUUAU@LB@ |:|||| |||||||@LB@ AUGUCG CCCAAUA@LB@3'-UUU...GGACC AUCGUAAAAUA CAAAA...UCG-5'@LB@ | |@LB@ 35 10@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -16.5796 kcal/mol@LB@Unfolding Energy - mRNA 7.36686 kcal/mol@LB@Unfolding Energy - sRNA 1.47152 kcal/mol@LB@@LB@Position - mRNA 250 -- 272@LB@Position - sRNA 11 -- 34@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 160 |
0.008086 |
0.1694 |
b3350 |
kefB |
-10.41 |
0.139805 |
251 -- 273 |
23 -- 46 |
potassium:proton antiporter |
|
_____________250______________________274\n_____________|________________________|\n5'-UAC...GCGGC_____C_G_______C________CGCGG...UGG-3'\n______________GGUGG_U_C_GGUGC_GCUGGCAU\n______________|||||_|_|_|||:|_|||:||||\n______________CCACC_A_G_CCAUG_CGAUCGUA\n3'-UUU...UUCCU_____A_G_A_____U________AAAUA...UCG-5'\n_____________|________________________|\n_____________47_______________________22\n |
267 -- 273 |
23 -- 29 |
-29.1074 kcal/mol |
14.1356 kcal/mol |
4.5585 kcal/mol |
250 274@LB@ | |@LB@5'-UAC...GCGGC C G C CGCGG...UGG-3'@LB@ GGUGG U C GGUGC GCUGGCAU@LB@ ||||| | | |||:| |||:||||@LB@ CCACC A G CCAUG CGAUCGUA@LB@3'-UUU...UUCCU A G A U AAAUA...UCG-5'@LB@ | |@LB@ 47 22@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -29.1074 kcal/mol@LB@Unfolding Energy - mRNA 14.1356 kcal/mol@LB@Unfolding Energy - sRNA 4.5585 kcal/mol@LB@@LB@Position - mRNA 251 -- 273@LB@Position - sRNA 23 -- 46@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 170 |
0.009245 |
0.1803 |
b3205 |
yhbJ |
-9.78 |
0.183109 |
251 -- 276 |
13 -- 39 |
adaptor protein for GlmZ/GlmY sRNA decay glucosamine-6-phosphate-regulated; NTPase |
|
_____________250__________________________277\n_____________|____________________________|\n5'-CGG...GUCGC____C__________AAGA_________UUUAC...CCG-3'\n______________CCUG_GUGC_GCUGG_____UAUGGGUU\n______________||||_||:|_|||:|_____||||||||\n______________GGAC_CAUG_CGAUC_____AUACCCAA\n3'-UUU...ACCAA_________U_____GUAAA________UACAA...UCG-5'\n_____________|____________________________|\n_____________40___________________________12\n |
270 -- 276 |
13 -- 19 |
-27.4258 kcal/mol |
13.0784 kcal/mol |
4.56849 kcal/mol |
250 277@LB@ | |@LB@5'-CGG...GUCGC C AAGA UUUAC...CCG-3'@LB@ CCUG GUGC GCUGG UAUGGGUU@LB@ |||| ||:| |||:| ||||||||@LB@ GGAC CAUG CGAUC AUACCCAA@LB@3'-UUU...ACCAA U GUAAA UACAA...UCG-5'@LB@ | |@LB@ 40 12@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -27.4258 kcal/mol@LB@Unfolding Energy - mRNA 13.0784 kcal/mol@LB@Unfolding Energy - sRNA 4.56849 kcal/mol@LB@@LB@Position - mRNA 251 -- 276@LB@Position - sRNA 13 -- 39@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 188 |
0.01085 |
0.1919 |
b1878 |
flhE |
-11.23 |
0.096033 |
252 -- 283 |
16 -- 51 |
proton seal during flagellar secretion |
|
_____________251__________________________________284\n_____________|____________________________________|\n5'-CGU...CCGCC__________A__G___CA____A____GUG_____AAUUA...AUC-3'\n______________GGGGAGG_GG__U_UGG___GGC_AGUA___UA_GG\n______________::|||||_||__:_|||___:||_||:|___||_||\n______________UUCCUCC_CC__G_ACC___UCG_UCGU___AU_CC\n3'-UUU...UCCGA_______A__AA_G___AUG___A____AAA__A__CAAUA...UCG-5'\n_____________|____________________________________|\n_____________52___________________________________15\n |
252 -- 258 |
45 -- 51 |
-25.2373 kcal/mol |
9.34808 kcal/mol |
4.65624 kcal/mol |
251 284@LB@ | |@LB@5'-CGU...CCGCC A G CA A GUG AAUUA...AUC-3'@LB@ GGGGAGG GG U UGG GGC AGUA UA GG@LB@ ::||||| || : ||| :|| ||:| || ||@LB@ UUCCUCC CC G ACC UCG UCGU AU CC@LB@3'-UUU...UCCGA A AA G AUG A AAA A CAAUA...UCG-5'@LB@ | |@LB@ 52 15@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -25.2373 kcal/mol@LB@Unfolding Energy - mRNA 9.34808 kcal/mol@LB@Unfolding Energy - sRNA 4.65624 kcal/mol@LB@@LB@Position - mRNA 252 -- 283@LB@Position - sRNA 16 -- 51@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 55 |
0.001331 |
0.08097 |
b2742 |
nlpD |
-12.02 |
0.064935 |
253 -- 272 |
24 -- 44 |
activator of AmiC murein hydrolase activity lipoprotein |
|
_____________252___________________273\n_____________|_____________________|\n5'-UAU...GUCAC_______GC____________GGCUG...CGG-3'\n______________UGGUUUC___UAUGGCUGGCA\n______________|||||:|___||::|||:|||\n______________ACCAAGG___AUGUCGAUCGU\n3'-UUU...CCUCC_______ACC___________AAAAU...UCG-5'\n_____________|_____________________|\n_____________45____________________23\n |
266 -- 272 |
24 -- 30 |
-23.7485 kcal/mol |
7.16759 kcal/mol |
4.55788 kcal/mol |
252 273@LB@ | |@LB@5'-UAU...GUCAC GC GGCUG...CGG-3'@LB@ UGGUUUC UAUGGCUGGCA@LB@ |||||:| ||::|||:|||@LB@ ACCAAGG AUGUCGAUCGU@LB@3'-UUU...CCUCC ACC AAAAU...UCG-5'@LB@ | |@LB@ 45 23@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -23.7485 kcal/mol@LB@Unfolding Energy - mRNA 7.16759 kcal/mol@LB@Unfolding Energy - sRNA 4.55788 kcal/mol@LB@@LB@Position - mRNA 253 -- 272@LB@Position - sRNA 24 -- 44@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 173 |
0.009278 |
0.1803 |
b3495 |
uspA |
-10.68 |
0.124344 |
253 -- 279 |
16 -- 40 |
universal stress global response regulator |
|
_____________252_________________________280\n_____________|___________________________|\n5'-GUC...CAAAG________G__AA____GUCUC_____CUCGC...AAG-3'\n______________UUCUGGUA_AG__AGCA_____UAUGG\n______________|:||||||_||__||||_____|||||\n______________AGGACCAU_UC__UCGU_____AUACC\n3'-UUU...CACCA________G__GA____AAA_______CAAUA...UCG-5'\n_____________|___________________________|\n_____________41__________________________15\n |
254 -- 260 |
33 -- 39 |
-24.2729 kcal/mol |
9.02768 kcal/mol |
4.56874 kcal/mol |
252 280@LB@ | |@LB@5'-GUC...CAAAG G AA GUCUC CUCGC...AAG-3'@LB@ UUCUGGUA AG AGCA UAUGG@LB@ |:|||||| || |||| |||||@LB@ AGGACCAU UC UCGU AUACC@LB@3'-UUU...CACCA G GA AAA CAAUA...UCG-5'@LB@ | |@LB@ 41 15@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -24.2729 kcal/mol@LB@Unfolding Energy - mRNA 9.02768 kcal/mol@LB@Unfolding Energy - sRNA 4.56874 kcal/mol@LB@@LB@Position - mRNA 253 -- 279@LB@Position - sRNA 16 -- 40@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 81 |
0.002689 |
0.1082 |
b1498 |
ydeN |
-15.88 |
0.005981 |
253 -- 275 |
21 -- 44 |
putative Ser-type periplasmic non-aryl sulfatase |
b3678 b3801 |
_____________252______________________276\n_____________|________________________|\n5'-AUU...GAUAC___CA___________________GCUGC...UAA-3'\n______________UGG__UCUGGUAUGGCU_GCAUUU\n______________|||__:||||||::|||_||||||\n______________ACC__GGACCAUGUCGA_CGUAAA\n3'-UUU...CCUCC___AA____________U______AUACC...UCG-5'\n_____________|________________________|\n_____________45_______________________20\n |
263 -- 269 |
28 -- 34 |
-26.8614 kcal/mol |
6.42389 kcal/mol |
4.55918 kcal/mol |
252 276@LB@ | |@LB@5'-AUU...GAUAC CA GCUGC...UAA-3'@LB@ UGG UCUGGUAUGGCU GCAUUU@LB@ ||| :||||||::||| ||||||@LB@ ACC GGACCAUGUCGA CGUAAA@LB@3'-UUU...CCUCC AA U AUACC...UCG-5'@LB@ | |@LB@ 45 20@LB@@LB@@LB@Energy -15.88 kcal/mol@LB@Hybridization Energy -26.8614 kcal/mol@LB@Unfolding Energy - mRNA 6.42389 kcal/mol@LB@Unfolding Energy - sRNA 4.55918 kcal/mol@LB@@LB@Position - mRNA 253 -- 275@LB@Position - sRNA 21 -- 44@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 27 |
0.0003737 |
0.04652 |
b2828 |
lgt |
-19.83 |
0.000134 |
254 -- 300 |
13 -- 50 |
phosphatidylglycerol-prolipoprotein diacylglyceryl transferase |
|
_____________253____________________________________________300\n_____________|______________________________________________|\n5'-CCU...UCAAU____CCC____CGC___A__________CUGAU____CUG_______-3'\n______________AGGA___GUGG___UUC_CUGGUACGGC_____GUAU___GUGGGUU\n______________||||___||||___|||_|||||||:||_____|:||___:||||||\n______________UCCU___CACC___AAG_GACCAUGUCG_____CGUA___UACCCAA\n3'-UUU...CCGAU____C_______________________AU_______AAA_______UACAA...UCG-5'\n_____________|_______________________________________________|\n_____________51______________________________________________12\n |
294 -- 300 |
13 -- 19 |
-39.0639 kcal/mol |
14.6059 kcal/mol |
4.62837 kcal/mol |
253 300@LB@ | |@LB@5'-CCU...UCAAU CCC CGC A CUGAU CUG -3'@LB@ AGGA GUGG UUC CUGGUACGGC GUAU GUGGGUU@LB@ |||| |||| ||| |||||||:|| |:|| :||||||@LB@ UCCU CACC AAG GACCAUGUCG CGUA UACCCAA@LB@3'-UUU...CCGAU C AU AAA UACAA...UCG-5'@LB@ | |@LB@ 51 12@LB@@LB@@LB@Energy -19.83 kcal/mol@LB@Hybridization Energy -39.0639 kcal/mol@LB@Unfolding Energy - mRNA 14.6059 kcal/mol@LB@Unfolding Energy - sRNA 4.62837 kcal/mol@LB@@LB@Position - mRNA 254 -- 300@LB@Position - sRNA 13 -- 50@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 2 |
1.307e-08 |
2.196e-05 |
b1825 |
yebO |
-18.49 |
0.000616 |
254 -- 287 |
16 -- 49 |
putative inner membrane protein |
|
_____________253__________________________________288\n_____________|____________________________________|\n5'-GUC...GUAUC__U__________CU___CG_________C______UUUUU...AUC-3'\n______________GG_GGUGGUUCUU__UAU__GGCU__CAU_UUGUGG\n______________||_||||||||:|__||:__:|||__|||_||:|||\n______________CC_CCACCAAGGA__AUG__UCGA__GUA_AAUACC\n3'-UUU...CGAUU__U__________CC_________UC___A______CAAUA...UCG-5'\n_____________|____________________________________|\n_____________50___________________________________15\n |
260 -- 266 |
37 -- 43 |
-30.8156 kcal/mol |
7.75183 kcal/mol |
4.57266 kcal/mol |
253 288@LB@ | |@LB@5'-GUC...GUAUC U CU CG C UUUUU...AUC-3'@LB@ GG GGUGGUUCUU UAU GGCU CAU UUGUGG@LB@ || ||||||||:| ||: :||| ||| ||:|||@LB@ CC CCACCAAGGA AUG UCGA GUA AAUACC@LB@3'-UUU...CGAUU U CC UC A CAAUA...UCG-5'@LB@ | |@LB@ 50 15@LB@@LB@@LB@Energy -18.49 kcal/mol@LB@Hybridization Energy -30.8156 kcal/mol@LB@Unfolding Energy - mRNA 7.75183 kcal/mol@LB@Unfolding Energy - sRNA 4.57266 kcal/mol@LB@@LB@Position - mRNA 254 -- 287@LB@Position - sRNA 16 -- 49@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 37 -- 43@LB@ |
