155 |
0.02668 |
0.5559 |
b1625 |
cnu |
-8.12 |
0.218326 |
240 -- 246 |
81 -- 87 |
nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor |
|
_____________239_____247\n_____________|_______|\n5'-UUU...AAAUC_______UCGAA...AUC-3'\n______________AGUUCAC\n______________|||||||\n______________UCAAGUG\n3'-CGC...CGUUU_______CAACC...AAG-5'\n_____________|_______|\n_____________88______80\n |
240 -- 246 |
81 -- 87 |
-9.1905 kcal/mol |
0.576286 kcal/mol |
0.494577 kcal/mol |
239 247@LB@ | |@LB@5'-UUU...AAAUC UCGAA...AUC-3'@LB@ AGUUCAC@LB@ |||||||@LB@ UCAAGUG@LB@3'-CGC...CGUUU CAACC...AAG-5'@LB@ | |@LB@ 88 80@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -9.1905 kcal/mol@LB@Unfolding Energy - mRNA 0.576286 kcal/mol@LB@Unfolding Energy - sRNA 0.494577 kcal/mol@LB@@LB@Position - mRNA 240 -- 246@LB@Position - sRNA 81 -- 87@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 81 -- 87@LB@ |
176 |
0.03112 |
0.5559 |
b2536 |
hcaT |
-7.63 |
0.261550 |
240 -- 259 |
67 -- 85 |
putative 3-phenylpropionic transporter |
|
_____________239__________________260\n_____________|____________________|\n5'-UCG...GCUAU_____AUACUU_________CGGCA...GGA-3'\n______________UUCAC______UUUUAGUUA\n______________|||||______:||||||||\n______________AAGUG______GAAAUCAAU\n3'-CGC...UUUUC_____CAACC__________AAGCU...AAG-5'\n_____________|____________________|\n_____________86___________________66\n |
253 -- 259 |
67 -- 73 |
-10.0019 kcal/mol |
1.80629 kcal/mol |
0.569003 kcal/mol |
239 260@LB@ | |@LB@5'-UCG...GCUAU AUACUU CGGCA...GGA-3'@LB@ UUCAC UUUUAGUUA@LB@ ||||| :||||||||@LB@ AAGUG GAAAUCAAU@LB@3'-CGC...UUUUC CAACC AAGCU...AAG-5'@LB@ | |@LB@ 86 66@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -10.0019 kcal/mol@LB@Unfolding Energy - mRNA 1.80629 kcal/mol@LB@Unfolding Energy - sRNA 0.569003 kcal/mol@LB@@LB@Position - mRNA 240 -- 259@LB@Position - sRNA 67 -- 85@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 67 -- 73@LB@ |
13 |
0.002299 |
0.5385 |
b3663 |
yicN |
-11.49 |
0.058154 |
241 -- 256 |
60 -- 78 |
DUF1198 family protein |
|
_____________240_________________257\n_____________|___________________|\n5'-CUU...GUUUG___________________GCUGA...AUC-3'\n______________UGGU__UGGUU_UUCGGGU\n______________|||:__|:|||_||||:||\n______________ACCG__AUCAA_AAGCUCA\n3'-CGC...GUGCA____AA_____U_______ACUCU...AAG-5'\n_____________|___________________|\n_____________79__________________59\n |
250 -- 256 |
60 -- 66 |
-15.2298 kcal/mol |
2.94333 kcal/mol |
0.797083 kcal/mol |
240 257@LB@ | |@LB@5'-CUU...GUUUG GCUGA...AUC-3'@LB@ UGGU UGGUU UUCGGGU@LB@ |||: |:||| ||||:||@LB@ ACCG AUCAA AAGCUCA@LB@3'-CGC...GUGCA AA U ACUCU...AAG-5'@LB@ | |@LB@ 79 59@LB@@LB@@LB@Energy -11.49 kcal/mol@LB@Hybridization Energy -15.2298 kcal/mol@LB@Unfolding Energy - mRNA 2.94333 kcal/mol@LB@Unfolding Energy - sRNA 0.797083 kcal/mol@LB@@LB@Position - mRNA 241 -- 256@LB@Position - sRNA 60 -- 78@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 60 -- 66@LB@ |
68 |
0.013 |
0.5385 |
b2823 |
ppdC |
-12.74 |
0.034901 |
243 -- 262 |
69 -- 89 |
putative prepilin peptidase-dependent protein |
|
_____________242___________________263\n_____________|_____________________|\n5'-ACG...UGCCG_____A_________GA____GUUGA...UCC-3'\n______________GAGGU__AUGUUGGC__UGGU\n______________:|:||__|:||||||__|:||\n______________UUUCA__UGCAACCG__AUCA\n3'-CGC...GGCGU_____AG________AA____AUAAG...AAG-5'\n_____________|_____________________|\n_____________90____________________68\n |
250 -- 256 |
75 -- 81 |
-18.5568 kcal/mol |
5.24273 kcal/mol |
0.572143 kcal/mol |
242 263@LB@ | |@LB@5'-ACG...UGCCG A GA GUUGA...UCC-3'@LB@ GAGGU AUGUUGGC UGGU@LB@ :|:|| |:|||||| |:||@LB@ UUUCA UGCAACCG AUCA@LB@3'-CGC...GGCGU AG AA AUAAG...AAG-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -12.74 kcal/mol@LB@Hybridization Energy -18.5568 kcal/mol@LB@Unfolding Energy - mRNA 5.24273 kcal/mol@LB@Unfolding Energy - sRNA 0.572143 kcal/mol@LB@@LB@Position - mRNA 243 -- 262@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 75 -- 81@LB@ |
23 |
0.004272 |
0.5385 |
b3315 |
rplV |
-10.64 |
0.081808 |
245 -- 278 |
60 -- 90 |
50S ribosomal subunit protein L22 |
|
_____________244________________________________279\n_____________|__________________________________|\n5'-CGC...GCUCA__________C___UU___GACCUG_____C___AAGAA...UGG-3'\n______________GAAGGUUCGC_UUG__GCU______AUUCG_GGU\n______________:||:||||:|_|||__|||______|||||_:||\n______________UUUUCAAGUG_AAC__CGA______UAAGC_UCA\n3'-CGC...AGGCG__________C________AAUCAA_________ACUCU...AAG-5'\n_____________|__________________________________|\n_____________91_________________________________59\n |
248 -- 254 |
81 -- 87 |
-21.0379 kcal/mol |
8.68511 kcal/mol |
1.70935 kcal/mol |
244 279@LB@ | |@LB@5'-CGC...GCUCA C UU GACCUG C AAGAA...UGG-3'@LB@ GAAGGUUCGC UUG GCU AUUCG GGU@LB@ :||:||||:| ||| ||| ||||| :||@LB@ UUUUCAAGUG AAC CGA UAAGC UCA@LB@3'-CGC...AGGCG C AAUCAA ACUCU...AAG-5'@LB@ | |@LB@ 91 59@LB@@LB@@LB@Energy -10.64 kcal/mol@LB@Hybridization Energy -21.0379 kcal/mol@LB@Unfolding Energy - mRNA 8.68511 kcal/mol@LB@Unfolding Energy - sRNA 1.70935 kcal/mol@LB@@LB@Position - mRNA 245 -- 278@LB@Position - sRNA 60 -- 90@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 81 -- 87@LB@ |
96 |
0.0164 |
0.5385 |
b2670 |
alaE |
-9.59 |
0.124335 |
245 -- 257 |
74 -- 86 |
alanine exporter alanine-inducible stress-responsive |
|
_____________244___________258\n_____________|_____________|\n5'-CGG...GAUAC_______A_____GUUUA...UCU-3'\n______________GUUCGCG_UGGUU\n______________||||:||_|||:|\n______________CAAGUGC_ACCGA\n3'-CGC...GUUUU_______A_____AAUCA...AAG-5'\n_____________|_____________|\n_____________87____________73\n |
245 -- 251 |
80 -- 86 |
-15.4589 kcal/mol |
5.35611 kcal/mol |
0.513318 kcal/mol |
244 258@LB@ | |@LB@5'-CGG...GAUAC A GUUUA...UCU-3'@LB@ GUUCGCG UGGUU@LB@ ||||:|| |||:|@LB@ CAAGUGC ACCGA@LB@3'-CGC...GUUUU A AAUCA...AAG-5'@LB@ | |@LB@ 87 73@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -15.4589 kcal/mol@LB@Unfolding Energy - mRNA 5.35611 kcal/mol@LB@Unfolding Energy - sRNA 0.513318 kcal/mol@LB@@LB@Position - mRNA 245 -- 257@LB@Position - sRNA 74 -- 86@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 80 -- 86@LB@ |
91 |
0.0156 |
0.5385 |
b0881 |
clpS |
-13.09 |
0.030255 |
248 -- 265 |
74 -- 90 |
regulatory protein for ClpA substrate specificity |
|
_____________247________________266\n_____________|__________________|\n5'-GCA...GAAGA___________AC_C___AAAAC...UCA-3'\n______________AAAAGUUCGCG__G_GCU\n______________||||||||:||__|_|||\n______________UUUUCAAGUGC__C_CGA\n3'-CGC...AGGCG___________AA_____AAUCA...AAG-5'\n_____________|__________________|\n_____________91_________________73\n |
252 -- 258 |
80 -- 86 |
-16.9257 kcal/mol |
3.31752 kcal/mol |
0.517587 kcal/mol |
247 266@LB@ | |@LB@5'-GCA...GAAGA AC C AAAAC...UCA-3'@LB@ AAAAGUUCGCG G GCU@LB@ ||||||||:|| | |||@LB@ UUUUCAAGUGC C CGA@LB@3'-CGC...AGGCG AA AAUCA...AAG-5'@LB@ | |@LB@ 91 73@LB@@LB@@LB@Energy -13.09 kcal/mol@LB@Hybridization Energy -16.9257 kcal/mol@LB@Unfolding Energy - mRNA 3.31752 kcal/mol@LB@Unfolding Energy - sRNA 0.517587 kcal/mol@LB@@LB@Position - mRNA 248 -- 265@LB@Position - sRNA 74 -- 90@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 80 -- 86@LB@ |
179 |
0.03159 |
0.5559 |
b0790 |
ybhP |
-12.03 |
0.046743 |
250 -- 264 |
71 -- 85 |
endo/exonuclease/phosphatase family protein |
|
_____________249_____________265\n_____________|_______________|\n5'-AGU...CAAUA_____AAA_______CCGCG...UUC-3'\n______________UUCAC___GGCUUUA\n______________|||||___|||||||\n______________AAGUG___CCGAAAU\n3'-CGC...UUUUC_____CAA_______CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
258 -- 264 |
71 -- 77 |
-13.6298 kcal/mol |
1.04243 kcal/mol |
0.560731 kcal/mol |
249 265@LB@ | |@LB@5'-AGU...CAAUA AAA CCGCG...UUC-3'@LB@ UUCAC GGCUUUA@LB@ ||||| |||||||@LB@ AAGUG CCGAAAU@LB@3'-CGC...UUUUC CAA CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -13.6298 kcal/mol@LB@Unfolding Energy - mRNA 1.04243 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 250 -- 264@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 71 -- 77@LB@ |
134 |
0.0229 |
0.5385 |
b3729 |
glmS |
-8.05 |
0.223933 |
255 -- 266 |
79 -- 90 |
L-glutamine:D-fructose-6-phosphate aminotransferase |
|
_____________254__________267\n_____________|____________|\n5'-CAG...UUCUU____________CGUCU...GUC-3'\n______________GAAGGUUUACGU\n______________:||:|||:||||\n______________UUUUCAAGUGCA\n3'-CGC...AGGCG____________ACCGA...AAG-5'\n_____________|____________|\n_____________91___________78\n |
260 -- 266 |
79 -- 85 |
-12.2414 kcal/mol |
3.68327 kcal/mol |
0.506924 kcal/mol |
254 267@LB@ | |@LB@5'-CAG...UUCUU CGUCU...GUC-3'@LB@ GAAGGUUUACGU@LB@ :||:|||:||||@LB@ UUUUCAAGUGCA@LB@3'-CGC...AGGCG ACCGA...AAG-5'@LB@ | |@LB@ 91 78@LB@@LB@@LB@Energy -8.05 kcal/mol@LB@Hybridization Energy -12.2414 kcal/mol@LB@Unfolding Energy - mRNA 3.68327 kcal/mol@LB@Unfolding Energy - sRNA 0.506924 kcal/mol@LB@@LB@Position - mRNA 255 -- 266@LB@Position - sRNA 79 -- 90@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 79 -- 85@LB@ |
22 |
0.004141 |
0.5385 |
b0462 |
acrB |
-13.08 |
0.030428 |
256 -- 265 |
75 -- 84 |
multidrug efflux system protein |
|
_____________255________266\n_____________|__________|\n5'-AAG...UAUCA__________AGGGG...CGC-3'\n______________UCAUGUUGGC\n______________|||:||||||\n______________AGUGCAACCG\n3'-CGC...UUUCA__________AAAUC...AAG-5'\n_____________|__________|\n_____________85_________74\n |
259 -- 265 |
75 -- 81 |
-16.8887 kcal/mol |
3.30616 kcal/mol |
0.505918 kcal/mol |
255 266@LB@ | |@LB@5'-AAG...UAUCA AGGGG...CGC-3'@LB@ UCAUGUUGGC@LB@ |||:||||||@LB@ AGUGCAACCG@LB@3'-CGC...UUUCA AAAUC...AAG-5'@LB@ | |@LB@ 85 74@LB@@LB@@LB@Energy -13.08 kcal/mol@LB@Hybridization Energy -16.8887 kcal/mol@LB@Unfolding Energy - mRNA 3.30616 kcal/mol@LB@Unfolding Energy - sRNA 0.505918 kcal/mol@LB@@LB@Position - mRNA 256 -- 265@LB@Position - sRNA 75 -- 84@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 75 -- 81@LB@ |