161 |
0.01797 |
0.3749 |
b1921 |
fliZ |
-13.03 |
0.068461 |
73 -- 137 |
125 -- 204 |
RpoS antagonist; putative regulator of FliA activity |
|
_____________72__________________________________________138\n_____________|___________________________________________|\n5'-UGC...GAGGU_______AU______G___C_G___________GC________UAUUA...AUC-3'\n______________CGGG_GA_____CGC_GGU_A_UCAGUUACACA_____CAGGC\n______________||||_||_____|:|_::|_|_|||||:|||||_____|||||\n______________GCCC_CU_____GUG_UUA_U_AGUCAGUGUGU_____GUCCG\n3'-UUU...CGACC____A__AAAAU___G_____G___________ACUAC_____UUCAG...UAG-5'\n_____________|___________________________________________|\n_____________205_________________________________________124\n |
105 -- 111 |
167 -- 173 |
-36.0631 kcal/mol |
8.93512 kcal/mol |
13.9606 kcal/mol |
72 138@LB@ | |@LB@5'-UGC...GAGGU AU G C G GC UAUUA...AUC-3'@LB@ CGGG GA CGC GGU A UCAGUUACACA CAGGC@LB@ |||| || |:| ::| | |||||:||||| |||||@LB@ GCCC CU GUG UUA U AGUCAGUGUGU GUCCG@LB@3'-UUU...CGACC A AAAAU G G ACUAC UUCAG...UAG-5'@LB@ | |@LB@ 205 124@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -36.0631 kcal/mol@LB@Unfolding Energy - mRNA 8.93512 kcal/mol@LB@Unfolding Energy - sRNA 13.9606 kcal/mol@LB@@LB@Position - mRNA 73 -- 137@LB@Position - sRNA 125 -- 204@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 167 -- 173@LB@ |
162 |
0.01805 |
0.3749 |
b2499 |
purM |
-13.07 |
0.067336 |
182 -- 195 |
13 -- 27 |
phosphoribosylaminoimidazole synthetase |
|
_____________181______196\n_____________|________|\n__________5'-U________AUGGU...CGC-3'\n______________AUAUUCAG\n______________|||:||||\n______________UAUGAGUC\n3'-UUU...GUGGU________AGUGU...UAG-5'\n_____________|________|\n_____________28_______12\n |
3 -- 9 |
174 -- 180 |
-7.89877 kcal/mol |
1.882 kcal/mol |
0.273058 kcal/mol |
181 196@LB@ | |@LB@ 5'-U AUGGU...CGC-3'@LB@ AUAUUCAG@LB@ |||:||||@LB@ UAUGAGUC@LB@3'-UUU...GUGGU AGUGU...UAG-5'@LB@ | |@LB@ 28 12@LB@@LB@@LB@Energy -13.07 kcal/mol@LB@Hybridization Energy -7.89877 kcal/mol@LB@Unfolding Energy - mRNA 1.882 kcal/mol@LB@Unfolding Energy - sRNA 0.273058 kcal/mol@LB@@LB@Position - mRNA 182 -- 195@LB@Position - sRNA 13 -- 27@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 174 -- 180@LB@ |
163 |
0.01822 |
0.376 |
b1073 |
flgB |
-9.73 |
0.308533 |
172 -- 220 |
24 -- 70 |
flagellar component of cell-proximal portion of basal-body rod |
|
_____________171_______221\n_____________|_________|\n5'-UGA...AACAU_________CG-3'\n______________CGCCAAUGC\n______________|:|||||:|\n______________GUGGUUAUG\n3'-UUU...AAAAU_________AGUCA...UAG-5'\n_____________|_________|\n_____________71________23\n |
292 -- 298 |
178 -- 184 |
-11.5881 kcal/mol |
1.63005 kcal/mol |
3.31726 kcal/mol |
171 221@LB@ | |@LB@5'-UGA...AACAU CG-3'@LB@ CGCCAAUGC@LB@ |:|||||:|@LB@ GUGGUUAUG@LB@3'-UUU...AAAAU AGUCA...UAG-5'@LB@ | |@LB@ 71 23@LB@@LB@@LB@Energy -9.73 kcal/mol@LB@Hybridization Energy -11.5881 kcal/mol@LB@Unfolding Energy - mRNA 1.63005 kcal/mol@LB@Unfolding Energy - sRNA 3.31726 kcal/mol@LB@@LB@Position - mRNA 172 -- 220@LB@Position - sRNA 24 -- 70@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 178 -- 184@LB@ |
164 |
0.01856 |
0.3808 |
b0715 |
abrB |
-11.36 |
0.150074 |
79 -- 113 |
125 -- 160 |
regulator of aidB expression; inner membrane protein |
|
_____________78_____________114\n_____________|______________|\n5'-GGC...CGGCG______U_______GCCGA-3'\n______________GCGCUA_UACUUGG\n______________:|:|:|_||||::|\n______________UGUGGU_AUGAGUC\n3'-UUU...UAAAA______U_______AGUGU...UAG-5'\n_____________|______________|\n_____________161____________124\n |
289 -- 295 |
174 -- 180 |
-13.5584 kcal/mol |
1.79119 kcal/mol |
3.6661 kcal/mol |
78 114@LB@ | |@LB@5'-GGC...CGGCG U GCCGA-3'@LB@ GCGCUA UACUUGG@LB@ :|:|:| ||||::|@LB@ UGUGGU AUGAGUC@LB@3'-UUU...UAAAA U AGUGU...UAG-5'@LB@ | |@LB@ 161 124@LB@@LB@@LB@Energy -11.36 kcal/mol@LB@Hybridization Energy -13.5584 kcal/mol@LB@Unfolding Energy - mRNA 1.79119 kcal/mol@LB@Unfolding Energy - sRNA 3.6661 kcal/mol@LB@@LB@Position - mRNA 79 -- 113@LB@Position - sRNA 125 -- 160@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 174 -- 180@LB@ |
165 |
0.01884 |
0.3812 |
b3291 |
mscL |
-11.12 |
0.167422 |
252 -- 267 |
193 -- 208 |
mechanosensitive channel protein high conductance |
|
_____________251_____268\n_____________|_______|\n5'-UGU...UGUCG_______AGGGA...UCU-3'\n______________GCUUCAU\n______________|||||||\n______________CGAAGUA\n3'-UUU...GGGAA_______G-5'\n_____________|_______|\n_____________209_____192\n |
182 -- 188 |
2 -- 8 |
-9.41561 kcal/mol |
2.23742 kcal/mol |
0.70263 kcal/mol |
251 268@LB@ | |@LB@5'-UGU...UGUCG AGGGA...UCU-3'@LB@ GCUUCAU@LB@ |||||||@LB@ CGAAGUA@LB@3'-UUU...GGGAA G-5'@LB@ | |@LB@ 209 192@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -9.41561 kcal/mol@LB@Unfolding Energy - mRNA 2.23742 kcal/mol@LB@Unfolding Energy - sRNA 0.70263 kcal/mol@LB@@LB@Position - mRNA 252 -- 267@LB@Position - sRNA 193 -- 208@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 2 -- 8@LB@ |
166 |
0.01886 |
0.3812 |
b3300 |
secY |
-11.48 |
0.141920 |
168 -- 177 |
196 -- 205 |
preprotein translocase membrane subunit |
|
_____________167_______________178\n_____________|_________________|\n5'-CCU...UCGAA____C_G__________CGAGG...UCC-3'\n______________GCUG_U_GCGGUAAAAU\n______________||||_|_||||||||||\n______________CGAC_A_CGCCAUUUUA\n3'-UUU...UGAAG______G__________UCACG...UAG-5'\n_____________|_________________|\n_____________206_______________195\n |
177 -- 183 |
44 -- 50 |
-20.9884 kcal/mol |
6.84834 kcal/mol |
6.15722 kcal/mol |
167 178@LB@ | |@LB@5'-CCU...UCGAA C G CGAGG...UCC-3'@LB@ GCUG U GCGGUAAAAU@LB@ |||| | ||||||||||@LB@ CGAC A CGCCAUUUUA@LB@3'-UUU...UGAAG G UCACG...UAG-5'@LB@ | |@LB@ 206 195@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -20.9884 kcal/mol@LB@Unfolding Energy - mRNA 6.84834 kcal/mol@LB@Unfolding Energy - sRNA 6.15722 kcal/mol@LB@@LB@Position - mRNA 168 -- 177@LB@Position - sRNA 196 -- 205@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 44 -- 50@LB@ |
167 |
0.01932 |
0.3812 |
b2912 |
fau |
-13.57 |
0.053124 |
153 -- 189 |
109 -- 152 |
5-formyltetrahydrofolate cyclo-ligase family protein |
|
_____________152__________190\n_____________|____________|\n5'-GAA...UGAGC____________GUCCG...UGG-3'\n______________AUGCUCGGUC_C\n______________||:|||:|||_|\n______________UAUGAGUCAG_G\n3'-UUU...GUGGU__________U_UGUAC...UAG-5'\n_____________|____________|\n_____________153__________108\n |
31 -- 37 |
172 -- 178 |
-13.9133 kcal/mol |
3.57919 kcal/mol |
0.28482 kcal/mol |
152 190@LB@ | |@LB@5'-GAA...UGAGC GUCCG...UGG-3'@LB@ AUGCUCGGUC C@LB@ ||:|||:||| |@LB@ UAUGAGUCAG G@LB@3'-UUU...GUGGU U UGUAC...UAG-5'@LB@ | |@LB@ 153 108@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -13.9133 kcal/mol@LB@Unfolding Energy - mRNA 3.57919 kcal/mol@LB@Unfolding Energy - sRNA 0.28482 kcal/mol@LB@@LB@Position - mRNA 153 -- 189@LB@Position - sRNA 109 -- 152@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 172 -- 178@LB@ |
168 |
0.01937 |
0.3812 |
b4354 |
yjiY |
-11.43 |
0.145336 |
99 -- 125 |
132 -- 159 |
putative transporter |
|
_____________98__________________________________________________126\n_____________|___________________________________________________|\n5'-CUU...UACCU_____UACG_______AACUCU_____CA______A_______A_______AUUUA...ACA-3'\n______________UACUU____CGCGCGU______GGCAA__UC_ACU__CAGGAU_GCGGUCA\n______________||||:____|:|:|:|______|||||__||_|||__|||:||_|||||||\n______________AUGAG____GUGUGUA______CCGUU__AG_UGA__GUCUUA_CGCCAGU\n3'-UUU...UGGUU_____UCA________CUACGU_____C___U___AA______A_______AGGGU...UAG-5'\n_____________|___________________________________________________|\n_____________160_________________________________________________131\n |
119 -- 125 |
132 -- 138 |
-39.8751 kcal/mol |
13.2469 kcal/mol |
12.8104 kcal/mol |
98 126@LB@ | |@LB@5'-CUU...UACCU UACG AACUCU CA A A AUUUA...ACA-3'@LB@ UACUU CGCGCGU GGCAA UC ACU CAGGAU GCGGUCA@LB@ ||||: |:|:|:| ||||| || ||| |||:|| |||||||@LB@ AUGAG GUGUGUA CCGUU AG UGA GUCUUA CGCCAGU@LB@3'-UUU...UGGUU UCA CUACGU C U AA A AGGGU...UAG-5'@LB@ | |@LB@ 160 131@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -39.8751 kcal/mol@LB@Unfolding Energy - mRNA 13.2469 kcal/mol@LB@Unfolding Energy - sRNA 12.8104 kcal/mol@LB@@LB@Position - mRNA 99 -- 125@LB@Position - sRNA 132 -- 159@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 132 -- 138@LB@ |
169 |
0.01937 |
0.3812 |
b4557 |
yidD |
-14.07 |
0.041992 |
2 -- 13 |
11 -- 22 |
membrane protein insertion efficiency factor UPF0161 family inner membrane protein |
|
_____________1______________________14\n_____________|______________________|\n__________5'-C____________GUAUCG____UUACA...UCA-3'\n______________UGGGGCAUCCCC_______GUC\n______________|||||||:||||_______:||\n______________ACCCCGUGGGGG_______UAG\n3'-UUU...UGCGU____________AACGAAG___-5'\n_____________|_____________________|\n_____________23____________________11\n |
7 -- 13 |
11 -- 17 |
-28.608 kcal/mol |
8.24927 kcal/mol |
10.7363 kcal/mol |
1 14@LB@ | |@LB@ 5'-C GUAUCG UUACA...UCA-3'@LB@ UGGGGCAUCCCC GUC@LB@ |||||||:|||| :||@LB@ ACCCCGUGGGGG UAG@LB@3'-UUU...UGCGU AACGAAG -5'@LB@ | |@LB@ 23 11@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -28.608 kcal/mol@LB@Unfolding Energy - mRNA 8.24927 kcal/mol@LB@Unfolding Energy - sRNA 10.7363 kcal/mol@LB@@LB@Position - mRNA 2 -- 13@LB@Position - sRNA 11 -- 22@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 11 -- 17@LB@ |
170 |
0.01941 |
0.3812 |
b3911 |
cpxA |
-13.13 |
0.065341 |
265 -- 299 |
168 -- 204 |
sensory histidine kinase in two-component regulatory system with CpxR |
|
_____________264______300\n_____________|________|\n5'-UAU...GUUUC________GAUAG...GCC-3'\n______________UGCUUCAU\n______________||||||||\n______________ACGAAGUA\n3'-UUU...GGGGA________G-5'\n_____________|________|\n_____________205______167\n |
196 -- 202 |
2 -- 8 |
-10.3801 kcal/mol |
3.0426 kcal/mol |
0.709873 kcal/mol |
264 300@LB@ | |@LB@5'-UAU...GUUUC GAUAG...GCC-3'@LB@ UGCUUCAU@LB@ ||||||||@LB@ ACGAAGUA@LB@3'-UUU...GGGGA G-5'@LB@ | |@LB@ 205 167@LB@@LB@@LB@Energy -13.13 kcal/mol@LB@Hybridization Energy -10.3801 kcal/mol@LB@Unfolding Energy - mRNA 3.0426 kcal/mol@LB@Unfolding Energy - sRNA 0.709873 kcal/mol@LB@@LB@Position - mRNA 265 -- 299@LB@Position - sRNA 168 -- 204@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 2 -- 8@LB@ |