| 192 |
0.00876 |
0.1751 |
bsu33520 |
csoR |
-16.67 |
0.014798 |
32 -- 56 |
39 -- 62 |
copper-sensing transcriptional repressor CsoR |
|
_____________31_________________________57\n_____________|__________________________|\n5'-CGG...ACCUU___________CU______C______UUUAA...GAG-3'\n______________GAUCGUAUCCA__UUUCUU__UCCCC\n______________:||||||:|||__|:||||__|||||\n______________UUAGCAUGGGU__AGAGAA__AGGGG\n3'-AUU...GUUUG___________________UA_____UAAAG...CAA-5'\n_____________|__________________________|\n_____________63_________________________38\n |
33 -- 39 |
55 -- 61 |
-27.3317 kcal/mol |
3.5392 kcal/mol |
9.04037 kcal/mol |
31 57@LB@ | |@LB@5'-CGG...ACCUU CU C UUUAA...GAG-3'@LB@ GAUCGUAUCCA UUUCUU UCCCC@LB@ :||||||:||| |:|||| |||||@LB@ UUAGCAUGGGU AGAGAA AGGGG@LB@3'-AUU...GUUUG UA UAAAG...CAA-5'@LB@ | |@LB@ 63 38@LB@@LB@@LB@Energy -16.67 kcal/mol@LB@Hybridization Energy -27.3317 kcal/mol@LB@Unfolding Energy - mRNA 3.5392 kcal/mol@LB@Unfolding Energy - sRNA 9.04037 kcal/mol@LB@@LB@Position - mRNA 32 -- 56@LB@Position - sRNA 39 -- 62@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 159 |
0.007366 |
0.1751 |
bsu06380 |
yebC |
-16.67 |
0.014812 |
77 -- 156 |
105 -- 185 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________76__________________________________________________________________________157\n_____________|___________________________________________________________________________|\n5'-ACC...CAUGC_______AA___G__AAU________________AGGAA___UUC___A__U____UAA________________GCUGA...CGA-3'\n______________UUUACUU___AU_GA___GAC_UUGAC__UGUUC_____GGC___GGU_CC_UAUA___GUGUU_UUAUUUUCUU\n______________||||||:___||_:|___|||_|||||__|||:|_____:||___:||_||_||||___:||||_|:|:|||||:\n______________AAAUGAG___UA_UU___CUG_AACUG__ACAGG_____UCG___UCA_GG_AUAU___UACAA_AGUGAAAGAG\n3'-AUU...AAAAA_______AAG__G__GUC___U_____UA_____CG______U_____A__U____________C__________UAGAA...CAA-5'\n_____________|___________________________________________________________________________|\n_____________186_________________________________________________________________________104\n |
87 -- 93 |
165 -- 171 |
-36.2834 kcal/mol |
12.0661 kcal/mol |
14.3768 kcal/mol |
76 157@LB@ | |@LB@5'-ACC...CAUGC AA G AAU AGGAA UUC A U UAA GCUGA...CGA-3'@LB@ UUUACUU AU GA GAC UUGAC UGUUC GGC GGU CC UAUA GUGUU UUAUUUUCUU@LB@ ||||||: || :| ||| ||||| |||:| :|| :|| || |||| :|||| |:|:|||||:@LB@ AAAUGAG UA UU CUG AACUG ACAGG UCG UCA GG AUAU UACAA AGUGAAAGAG@LB@3'-AUU...AAAAA AAG G GUC U UA CG U A U C UAGAA...CAA-5'@LB@ | |@LB@ 186 104@LB@@LB@@LB@Energy -16.67 kcal/mol@LB@Hybridization Energy -36.2834 kcal/mol@LB@Unfolding Energy - mRNA 12.0661 kcal/mol@LB@Unfolding Energy - sRNA 14.3768 kcal/mol@LB@@LB@Position - mRNA 77 -- 156@LB@Position - sRNA 105 -- 185@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 165 -- 171@LB@ |
| 153 |
0.007014 |
0.1751 |
bsu10400 |
yhxC |
-16.66 |
0.014878 |
138 -- 167 |
138 -- 167 |
oxidoreductase |
|
_____________137____________________________168\n_____________|______________________________|\n5'-UCC...UCUAU________AC______AGCA__________AUAAC...CGA-3'\n______________CUUUUCAU__AUAGGA____GGCAUUGUUC\n______________||:|||||__|:||||____|:||||||:|\n______________GAGAAGUA__UGUCCU____CUGUAACAGG\n3'-AUU...AAAAU________GU______GUAA__________CGUCG...CAA-5'\n_____________|______________________________|\n_____________168____________________________137\n |
161 -- 167 |
138 -- 144 |
-29.0079 kcal/mol |
5.02609 kcal/mol |
7.37082 kcal/mol |
137 168@LB@ | |@LB@5'-UCC...UCUAU AC AGCA AUAAC...CGA-3'@LB@ CUUUUCAU AUAGGA GGCAUUGUUC@LB@ ||:||||| |:|||| |:||||||:|@LB@ GAGAAGUA UGUCCU CUGUAACAGG@LB@3'-AUU...AAAAU GU GUAA CGUCG...CAA-5'@LB@ | |@LB@ 168 137@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -29.0079 kcal/mol@LB@Unfolding Energy - mRNA 5.02609 kcal/mol@LB@Unfolding Energy - sRNA 7.37082 kcal/mol@LB@@LB@Position - mRNA 138 -- 167@LB@Position - sRNA 138 -- 167@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 138 -- 144@LB@ |
| 161 |
0.00741 |
0.1751 |
bsu24000 |
bmrU |
-16.51 |
0.015967 |
115 -- 144 |
156 -- 183 |
lipid kinase BmrU |
|
_____________114____________________________________145\n_____________|______________________________________|\n5'-GGA...AAUUA___________UC____AA_ACCUC_____________AUCUG...AUU-3'\n______________AAG_UCCAUGU__AAUG__G_____UC_CUUUUUCAUC\n______________|||_|||||:|__||||__|_____||_||||:|||||\n______________UUC_AGGUAUA__UUAC__C_____AG_GAAAGAGUAG\n3'-AUU...CGUCG___A_____________AA________U__________AAGUU...CAA-5'\n_____________|______________________________________|\n_____________184____________________________________155\n |
56 -- 62 |
102 -- 108 |
-19.6184 kcal/mol |
4.38872 kcal/mol |
6.78097 kcal/mol |
114 145@LB@ | |@LB@5'-GGA...AAUUA UC AA ACCUC AUCUG...AUU-3'@LB@ AAG UCCAUGU AAUG G UC CUUUUUCAUC@LB@ ||| |||||:| |||| | || ||||:|||||@LB@ UUC AGGUAUA UUAC C AG GAAAGAGUAG@LB@3'-AUU...CGUCG A AA U AAGUU...CAA-5'@LB@ | |@LB@ 184 155@LB@@LB@@LB@Energy -16.51 kcal/mol@LB@Hybridization Energy -19.6184 kcal/mol@LB@Unfolding Energy - mRNA 4.38872 kcal/mol@LB@Unfolding Energy - sRNA 6.78097 kcal/mol@LB@@LB@Position - mRNA 115 -- 144@LB@Position - sRNA 156 -- 183@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 197 |
0.009002 |
0.1751 |
bsu33650 |
yvzC |
-16.51 |
0.015985 |
3 -- 52 |
121 -- 172 |
HTH-type transcriptional regulator YvzC |
|
_____________2__________________________________________________53\n_____________|__________________________________________________|\n____5'-ACUUUCU_______C_____AU__CC__UA_________CAA___U___________UCUCA...UCU-3'\n______________CUCUUCA___GCA__GC___G__AUUGUUCGC___AGC___UUCCAUAUA\n______________|||||||___:||__:|___|__|||||:|||___|||___|||||||||\n______________GAGAAGU___UGU__UG___C__UAACAGGCG___UCG___AAGGUAUAU\n3'-AUU...AAAAU_______AGU___CC__UAA_UG_______________UUC_________UACAA...CAA-5'\n_____________|__________________________________________________|\n_____________173________________________________________________120\n |
46 -- 52 |
121 -- 127 |
-33.6584 kcal/mol |
6.173 kcal/mol |
10.5345 kcal/mol |
2 53@LB@ | |@LB@ 5'-ACUUUCU C AU CC UA CAA U UCUCA...UCU-3'@LB@ CUCUUCA GCA GC G AUUGUUCGC AGC UUCCAUAUA@LB@ ||||||| :|| :| | |||||:||| ||| |||||||||@LB@ GAGAAGU UGU UG C UAACAGGCG UCG AAGGUAUAU@LB@3'-AUU...AAAAU AGU CC UAA UG UUC UACAA...CAA-5'@LB@ | |@LB@ 173 120@LB@@LB@@LB@Energy -16.51 kcal/mol@LB@Hybridization Energy -33.6584 kcal/mol@LB@Unfolding Energy - mRNA 6.173 kcal/mol@LB@Unfolding Energy - sRNA 10.5345 kcal/mol@LB@@LB@Position - mRNA 3 -- 52@LB@Position - sRNA 121 -- 172@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 121 -- 127@LB@ |
| 176 |
0.008122 |
0.1751 |
bsu16520 |
frr |
-16.32 |
0.017549 |
85 -- 113 |
136 -- 167 |
ribosome-recycling factor |
|
_____________84________________________________114\n_____________|_________________________________|\n5'-AGA...GCUUC_____________U_____A_____________UUAUC...AUC-3'\n______________CUCUUUAU__GCA_GGACA_UGACAU__UCCGC\n______________|||||:||__:||_|||||_||||||__|||||\n______________GAGAAGUA__UGU_CCUGU_ACUGUA__AGGCG\n3'-AUU...AAAAU________GU_________A______AC_____UCGUU...CAA-5'\n_____________|_________________________________|\n_____________168_______________________________135\n |
86 -- 92 |
160 -- 166 |
-32.0013 kcal/mol |
8.50527 kcal/mol |
7.50175 kcal/mol |
84 114@LB@ | |@LB@5'-AGA...GCUUC U A UUAUC...AUC-3'@LB@ CUCUUUAU GCA GGACA UGACAU UCCGC@LB@ |||||:|| :|| ||||| |||||| |||||@LB@ GAGAAGUA UGU CCUGU ACUGUA AGGCG@LB@3'-AUU...AAAAU GU A AC UCGUU...CAA-5'@LB@ | |@LB@ 168 135@LB@@LB@@LB@Energy -16.32 kcal/mol@LB@Hybridization Energy -32.0013 kcal/mol@LB@Unfolding Energy - mRNA 8.50527 kcal/mol@LB@Unfolding Energy - sRNA 7.50175 kcal/mol@LB@@LB@Position - mRNA 85 -- 113@LB@Position - sRNA 136 -- 167@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 160 -- 166@LB@ |
| 179 |
0.008166 |
0.1751 |
bsu40550 |
ppaC |
-16.23 |
0.018315 |
37 -- 106 |
8 -- 74 |
manganese-dependent inorganic pyrophosphatase |
|
_____________36_______________________________________________________________________107\n_____________|________________________________________________________________________|\n5'-GAC...AUUAC__________C____________GUA_____CACA__U_____CCUUAGCUCAAA__________CUUA___ACAUC...AUG-3'\n______________AUUUU_GCAA_UAAUC_UACCCA___UUUUA____CC_UUUCU____________GAAAAUGCUU____UUC\n______________||:||_||||_:||||_||||||___|:|||____||_|||||____________|||||:||||____|||\n______________UAGAA_CGUU_GUUAG_AUGGGU___AGAAU____GG_AAAGA____________CUUUUGCGAA____AAG\n3'-AUU...AACGU_____C____U_____C______AG______AAGG__U_____AACUUUAAA_____________UUA____AAAACAA-5'\n_____________|________________________________________________________________________|\n_____________75_______________________________________________________________________7\n |
93 -- 99 |
14 -- 20 |
-36.8068 kcal/mol |
5.4197 kcal/mol |
15.7808 kcal/mol |
36 107@LB@ | |@LB@5'-GAC...AUUAC C GUA CACA U CCUUAGCUCAAA CUUA ACAUC...AUG-3'@LB@ AUUUU GCAA UAAUC UACCCA UUUUA CC UUUCU GAAAAUGCUU UUC@LB@ ||:|| |||| :|||| |||||| |:||| || ||||| |||||:|||| |||@LB@ UAGAA CGUU GUUAG AUGGGU AGAAU GG AAAGA CUUUUGCGAA AAG@LB@3'-AUU...AACGU C U C AG AAGG U AACUUUAAA UUA AAAACAA-5'@LB@ | |@LB@ 75 7@LB@@LB@@LB@Energy -16.23 kcal/mol@LB@Hybridization Energy -36.8068 kcal/mol@LB@Unfolding Energy - mRNA 5.4197 kcal/mol@LB@Unfolding Energy - sRNA 15.7808 kcal/mol@LB@@LB@Position - mRNA 37 -- 106@LB@Position - sRNA 8 -- 74@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 167 |
0.007775 |
0.1751 |
bsu09889 |
yhzD |
-15.75 |
0.023145 |
43 -- 92 |
39 -- 89 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________42____________________________________________________93\n_____________|_____________________________________________________|\n5'-GGA...CUCCA____U_______AC______AAUU_______C___A____C____C_______UGACC...GUG-3'\n______________AAUG_CUUCGUU__GUGAUC____GUAAGCA__UG_AUCU__CUC___UUCCC\n______________||||_|||||||__|::|||____|:||:||__:|_|:|:__|||___|||||\n______________UUAC_GAAGCAA__CGUUAG____CGUUUGU__GC_UGGG__GAG___AAGGG\n3'-AUU...AUUAC____C_______________AAC________UA__A____UA___AAU_____GUAAA...CAA-5'\n_____________|_____________________________________________________|\n_____________90____________________________________________________38\n |
67 -- 73 |
62 -- 68 |
-30.4166 kcal/mol |
5.34264 kcal/mol |
10.926 kcal/mol |
42 93@LB@ | |@LB@5'-GGA...CUCCA U AC AAUU C A C C UGACC...GUG-3'@LB@ AAUG CUUCGUU GUGAUC GUAAGCA UG AUCU CUC UUCCC@LB@ |||| ||||||| |::||| |:||:|| :| |:|: ||| |||||@LB@ UUAC GAAGCAA CGUUAG CGUUUGU GC UGGG GAG AAGGG@LB@3'-AUU...AUUAC C AAC UA A UA AAU GUAAA...CAA-5'@LB@ | |@LB@ 90 38@LB@@LB@@LB@Energy -15.75 kcal/mol@LB@Hybridization Energy -30.4166 kcal/mol@LB@Unfolding Energy - mRNA 5.34264 kcal/mol@LB@Unfolding Energy - sRNA 10.926 kcal/mol@LB@@LB@Position - mRNA 43 -- 92@LB@Position - sRNA 39 -- 89@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 198 |
0.009004 |
0.1751 |
bsu38400 |
epr |
-15.65 |
0.024309 |
91 -- 136 |
32 -- 78 |
minor extracellular protease epr |
|
_____________90________________________________________________137\n_____________|_________________________________________________|\n5'-UGU...AAAUC__________C_______C_C_______GAAAAAUU_____________ACUAU...AAG-3'\n______________UGC_AUUUUG_UAAACAA_C_UGCCCAU________UUUUCC__UUCUU\n______________|||_||:|||_:||||||_|_|:|||||________||::||__|||||\n______________ACG_UAGAAC_GUUUGUU_G_AUGGGUA________AAGGGG__AAGAA\n3'-AUU...AAGCA___U______C_______A_C_______GAGAAU________UA_____ACUUU...CAA-5'\n_____________|_________________________________________________|\n_____________79________________________________________________31\n |
111 -- 117 |
51 -- 57 |
-30.7525 kcal/mol |
4.20051 kcal/mol |
13.8985 kcal/mol |
90 137@LB@ | |@LB@5'-UGU...AAAUC C C C GAAAAAUU ACUAU...AAG-3'@LB@ UGC AUUUUG UAAACAA C UGCCCAU UUUUCC UUCUU@LB@ ||| ||:||| :|||||| | |:||||| ||::|| |||||@LB@ ACG UAGAAC GUUUGUU G AUGGGUA AAGGGG AAGAA@LB@3'-AUU...AAGCA U C A C GAGAAU UA ACUUU...CAA-5'@LB@ | |@LB@ 79 31@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -30.7525 kcal/mol@LB@Unfolding Energy - mRNA 4.20051 kcal/mol@LB@Unfolding Energy - sRNA 13.8985 kcal/mol@LB@@LB@Position - mRNA 91 -- 136@LB@Position - sRNA 32 -- 78@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 190 |
0.008698 |
0.1751 |
bsu19130 |
yocA |
-15.61 |
0.024807 |
4 -- 94 |
40 -- 127 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type h: extrachromosomal origin' |
|
_____________3___________________________________________________________________________________________________95\n_____________|___________________________________________________________________________________________________|\n________5'-CAG_______UA_______C_______UA_____U___UUUAUCUUAUAACAAA__________AGU______CA_________________A_________AAUCU...ACC-3'\n______________UCAUAUG______UCA_CUUUCUU___UUCA_AGU________________UGCG__CUUG___GCAAAC______GCCUG___CUUGU_UUCCAUUUC\n______________:|||||:______|||_||||||:___||||_|||________________|||:__||||___||||||______:||::___|||:|_::|||||||\n______________GGUAUAU______AGU_GAAAGAG___AAGU_UCA________________ACGU__GAAC___CGUUUG______UGGGU___GAAUA_GGGGUAAAG\n3'-AUU...UUCAA_______UACAAC___________UAG____U___UUACUUACCGAAGCA_____UA_____________UUAGCA_____AGA_____A_________AAACU...CAA-5'\n_____________|___________________________________________________________________________________________________|\n_____________128_________________________________________________________________________________________________39\n |
82 -- 88 |
34 -- 40 |
-43.0073 kcal/mol |
9.62595 kcal/mol |
23.221 kcal/mol |
3 95@LB@ | |@LB@ 5'-CAG UA C UA U UUUAUCUUAUAACAAA AGU CA A AAUCU...ACC-3'@LB@ UCAUAUG UCA CUUUCUU UUCA AGU UGCG CUUG GCAAAC GCCUG CUUGU UUCCAUUUC@LB@ :|||||: ||| ||||||: |||| ||| |||: |||| |||||| :||:: |||:| ::|||||||@LB@ GGUAUAU AGU GAAAGAG AAGU UCA ACGU GAAC CGUUUG UGGGU GAAUA GGGGUAAAG@LB@3'-AUU...UUCAA UACAAC UAG U UUACUUACCGAAGCA UA UUAGCA AGA A AAACU...CAA-5'@LB@ | |@LB@ 128 39@LB@@LB@@LB@Energy -15.61 kcal/mol@LB@Hybridization Energy -43.0073 kcal/mol@LB@Unfolding Energy - mRNA 9.62595 kcal/mol@LB@Unfolding Energy - sRNA 23.221 kcal/mol@LB@@LB@Position - mRNA 4 -- 94@LB@Position - sRNA 40 -- 127@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 34 -- 40@LB@ |
