| 107 |
0.009921 |
0.3118 |
b0836 |
bssR |
-14.44 |
0.011050 |
12 -- 65 |
14 -- 65 |
repressor of biofilm formation by indole transport regulation |
|
_____________11____________________________________________________________66\n_____________|_____________________________________________________________|\n5'-AUU...UUACA_____G___________________A___U______UUCUG____________AUC_____CUCAU...ACA-3'\n______________GGAAA_GUCAG_GGCAG______GG_UUC_ACAGAG_____GAUAAAAUUUGU___GCAAU\n______________|||||_:||||_||||:______||_::|_|||||:_____:|||||||:|||___:||||\n______________CCUUU_UAGUC_CCGUU______CC_GGG_UGUCUU_____UUAUUUUAGACA___UGUUA\n3'-UUU...UACAA___________A_____ACGUUA______U_______________________C_______UUUCC...UUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________13\n |
46 -- 52 |
25 -- 31 |
-37.4064 kcal/mol |
11.8508 kcal/mol |
11.1173 kcal/mol |
11 66@LB@ | |@LB@5'-AUU...UUACA G A U UUCUG AUC CUCAU...ACA-3'@LB@ GGAAA GUCAG GGCAG GG UUC ACAGAG GAUAAAAUUUGU GCAAU@LB@ ||||| :|||| ||||: || ::| |||||: :|||||||:||| :||||@LB@ CCUUU UAGUC CCGUU CC GGG UGUCUU UUAUUUUAGACA UGUUA@LB@3'-UUU...UACAA A ACGUUA U C UUUCC...UUG-5'@LB@ | |@LB@ 66 13@LB@@LB@@LB@Energy -14.44 kcal/mol@LB@Hybridization Energy -37.4064 kcal/mol@LB@Unfolding Energy - mRNA 11.8508 kcal/mol@LB@Unfolding Energy - sRNA 11.1173 kcal/mol@LB@@LB@Position - mRNA 12 -- 65@LB@Position - sRNA 14 -- 65@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 138 |
0.01562 |
0.3807 |
b1735 |
chbR |
-9.56 |
0.149643 |
62 -- 73 |
41 -- 54 |
repressor of chb operon for N N'-diacetylchitobiose utilization |
|
_____________61_____________74\n_____________|______________|\n5'-GAU...UUGAA______________GAAGG...CUG-3'\n______________GGCGAUGCG__GGC\n______________|||:||||:__|||\n______________CCGUUACGU__CCG\n3'-UUU...AGUCA_________UA___GGUUG...UUG-5'\n_____________|______________|\n_____________55_____________40\n |
64 -- 70 |
46 -- 52 |
-18.6965 kcal/mol |
5.24959 kcal/mol |
3.89026 kcal/mol |
61 74@LB@ | |@LB@5'-GAU...UUGAA GAAGG...CUG-3'@LB@ GGCGAUGCG GGC@LB@ |||:||||: |||@LB@ CCGUUACGU CCG@LB@3'-UUU...AGUCA UA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -18.6965 kcal/mol@LB@Unfolding Energy - mRNA 5.24959 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 62 -- 73@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 132 |
0.0144 |
0.3654 |
b2381 |
ypdB |
-7.98 |
0.293473 |
18 -- 39 |
11 -- 32 |
response regulator activating yhjX; pyruvate-responsive YpdAB two-component system |
|
_____________17_____________________40\n_____________|______________________|\n5'-AUU...GAAGC_________GCCG_________AUUGG...ACG-3'\n______________GAAUGAAAU____GGCAAUAAA\n______________:|||:||||____|:|||||||\n______________UUUAUUUUA____CUGUUAUUU\n3'-UUU...UGUCU_________GACA_________CCGUA...UUG-5'\n_____________|______________________|\n_____________33_____________________10\n |
33 -- 39 |
11 -- 17 |
-14.9693 kcal/mol |
2.07375 kcal/mol |
4.91579 kcal/mol |
17 40@LB@ | |@LB@5'-AUU...GAAGC GCCG AUUGG...ACG-3'@LB@ GAAUGAAAU GGCAAUAAA@LB@ :|||:|||| |:|||||||@LB@ UUUAUUUUA CUGUUAUUU@LB@3'-UUU...UGUCU GACA CCGUA...UUG-5'@LB@ | |@LB@ 33 10@LB@@LB@@LB@Energy -7.98 kcal/mol@LB@Hybridization Energy -14.9693 kcal/mol@LB@Unfolding Energy - mRNA 2.07375 kcal/mol@LB@Unfolding Energy - sRNA 4.91579 kcal/mol@LB@@LB@Position - mRNA 18 -- 39@LB@Position - sRNA 11 -- 32@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 80 |
0.006956 |
0.2822 |
b1914 |
uvrY |
-9.02 |
0.189987 |
260 -- 281 |
5 -- 24 |
response regulator in two-component regulatory system with BarA |
|
_____________259____________________282\n_____________|______________________|\n5'-UUC...CGCAU____GAA____UA_________AAAGU...CAU-3'\n______________UCUG___GAUA__AAGGGUAUA\n______________||||___||:|__||:||:|||\n______________AGAC___CUGU__UUUCCGUAU\n3'-UUU...AUUUU____A______UA_________AUUG-5'\n_____________|______________________|\n_____________25_____________________4\n |
275 -- 281 |
5 -- 11 |
-15.9126 kcal/mol |
2.27135 kcal/mol |
4.61703 kcal/mol |
259 282@LB@ | |@LB@5'-UUC...CGCAU GAA UA AAAGU...CAU-3'@LB@ UCUG GAUA AAGGGUAUA@LB@ |||| ||:| ||:||:|||@LB@ AGAC CUGU UUUCCGUAU@LB@3'-UUU...AUUUU A UA AUUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -9.02 kcal/mol@LB@Hybridization Energy -15.9126 kcal/mol@LB@Unfolding Energy - mRNA 2.27135 kcal/mol@LB@Unfolding Energy - sRNA 4.61703 kcal/mol@LB@@LB@Position - mRNA 260 -- 281@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 94 |
0.008385 |
0.3 |
b1804 |
rnd |
-8.17 |
0.271836 |
224 -- 238 |
41 -- 54 |
ribonuclease D |
|
_____________223_____________239\n_____________|_______________|\n5'-GUC...ACCAC__A_______C____UUCUU...GUA-3'\n______________GG_CGAUGCG_UGGC\n______________||_|:||||:_||||\n______________CC_GUUACGU_ACCG\n3'-UUU...AGUCA__________U____GGUUG...UUG-5'\n_____________|_______________|\n_____________55______________40\n |
227 -- 233 |
46 -- 52 |
-18.0571 kcal/mol |
5.99437 kcal/mol |
3.89026 kcal/mol |
223 239@LB@ | |@LB@5'-GUC...ACCAC A C UUCUU...GUA-3'@LB@ GG CGAUGCG UGGC@LB@ || |:||||: ||||@LB@ CC GUUACGU ACCG@LB@3'-UUU...AGUCA U GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -18.0571 kcal/mol@LB@Unfolding Energy - mRNA 5.99437 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 224 -- 238@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 174 |
0.02096 |
0.4033 |
b3929 |
rraA |
-13.95 |
0.014802 |
2 -- 21 |
45 -- 66 |
ribonuclease E (RNase E) inhibitor protein |
|
_____________1______________________22\n_____________|______________________|\n__________5'-A____CC________________CCAAU...GCG-3'\n______________UGGA____CGGUGGCGAUGCGA\n______________||||____|:|||||:||||:|\n______________ACCU____GUCACCGUUACGUU\n3'-UUU...AUACA____UUUA______________ACCGG...UUG-5'\n_____________|______________________|\n_____________67_____________________44\n |
15 -- 21 |
45 -- 51 |
-26.5083 kcal/mol |
8.28748 kcal/mol |
4.27166 kcal/mol |
1 22@LB@ | |@LB@ 5'-A CC CCAAU...GCG-3'@LB@ UGGA CGGUGGCGAUGCGA@LB@ |||| |:|||||:||||:|@LB@ ACCU GUCACCGUUACGUU@LB@3'-UUU...AUACA UUUA ACCGG...UUG-5'@LB@ | |@LB@ 67 44@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -26.5083 kcal/mol@LB@Unfolding Energy - mRNA 8.28748 kcal/mol@LB@Unfolding Energy - sRNA 4.27166 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 45 -- 66@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 42 |
0.002679 |
0.2088 |
b1427 |
rimL |
-12.89 |
0.027177 |
178 -- 217 |
11 -- 49 |
ribosomal-protein-L7/L12-serine acetyltransferase |
|
_____________177_______________________________________218\n_____________|_________________________________________|\n5'-GAU...ACAAC________AU____U___________GA___AA________AGUAA...CCU-3'\n______________UGC_AUGG__UGAC_GGAGAUAAGAU__CUG__ACGAUAAA\n______________|||_||||__::||_|:|:||||:||__|||__||:|||||\n______________ACG_UACC__GUUG_CUUUUAUUUUA__GAC__UGUUAUUU\n3'-UUU...CCGUU___U____GG____U________________AC________CCGUA...UUG-5'\n_____________|_________________________________________|\n_____________50________________________________________10\n |
211 -- 217 |
11 -- 17 |
-27.9575 kcal/mol |
3.9779 kcal/mol |
11.0867 kcal/mol |
177 218@LB@ | |@LB@5'-GAU...ACAAC AU U GA AA AGUAA...CCU-3'@LB@ UGC AUGG UGAC GGAGAUAAGAU CUG ACGAUAAA@LB@ ||| |||| ::|| |:|:||||:|| ||| ||:|||||@LB@ ACG UACC GUUG CUUUUAUUUUA GAC UGUUAUUU@LB@3'-UUU...CCGUU U GG U AC CCGUA...UUG-5'@LB@ | |@LB@ 50 10@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -27.9575 kcal/mol@LB@Unfolding Energy - mRNA 3.9779 kcal/mol@LB@Unfolding Energy - sRNA 11.0867 kcal/mol@LB@@LB@Position - mRNA 178 -- 217@LB@Position - sRNA 11 -- 49@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 34 |
0.002116 |
0.2088 |
b0081 |
mraZ |
-11.86 |
0.047767 |
154 -- 189 |
9 -- 59 |
RsmH methytransferase inhibitor |
|
_____________153___________________________________________________190\n_____________|_____________________________________________________|\n5'-GAU...UCCUU_______G__AU_________AA_____________________G________GUGAG...AAA-3'\n______________UCAGUGG_AA__UGUGG_GGC__A________________GUGG_AAUAAGGG\n______________|||||||_||__||:::_|||__|________________|||:_|||||:||\n______________AGUCACC_UU__ACGUU_CCG__U________________CACU_UUAUUUCC\n3'-UUU...CUUUU_______G_________A___GG_UGUCUUUUAUUUUAGA____G________GUAUAUUG-5'\n_____________|_____________________________________________________|\n_____________60____________________________________________________8\n |
183 -- 189 |
9 -- 15 |
-29.7093 kcal/mol |
6.7157 kcal/mol |
11.1344 kcal/mol |
153 190@LB@ | |@LB@5'-GAU...UCCUU G AU AA G GUGAG...AAA-3'@LB@ UCAGUGG AA UGUGG GGC A GUGG AAUAAGGG@LB@ ||||||| || ||::: ||| | |||: |||||:||@LB@ AGUCACC UU ACGUU CCG U CACU UUAUUUCC@LB@3'-UUU...CUUUU G A GG UGUCUUUUAUUUUAGA G GUAUAUUG-5'@LB@ | |@LB@ 60 8@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -29.7093 kcal/mol@LB@Unfolding Energy - mRNA 6.7157 kcal/mol@LB@Unfolding Energy - sRNA 11.1344 kcal/mol@LB@@LB@Position - mRNA 154 -- 189@LB@Position - sRNA 9 -- 59@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 143 |
0.01651 |
0.3828 |
b2793 |
syd |
-11.91 |
0.046390 |
192 -- 225 |
39 -- 65 |
SecY-interacting protein |
|
_____________191________________________________226\n_____________|__________________________________|\n5'-UCA...GAAGA_A___________A____UUGACC___CAA____UGAAA...UGU-3'\n______________G_GAAAUUAGUGG_CGAU______GCA___GCCC\n______________|_:||||:|||||_|:||______|||___||||\n______________C_UUUUAGUCACC_GUUA______CGU___CGGG\n3'-UUU...UACAA_C_________________________UAC____UUGUC...UUG-5'\n_____________|__________________________________|\n_____________66_________________________________38\n |
198 -- 204 |
53 -- 59 |
-24.7129 kcal/mol |
6.12952 kcal/mol |
6.66922 kcal/mol |
191 226@LB@ | |@LB@5'-UCA...GAAGA A A UUGACC CAA UGAAA...UGU-3'@LB@ G GAAAUUAGUGG CGAU GCA GCCC@LB@ | :||||:||||| |:|| ||| ||||@LB@ C UUUUAGUCACC GUUA CGU CGGG@LB@3'-UUU...UACAA C UAC UUGUC...UUG-5'@LB@ | |@LB@ 66 38@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -24.7129 kcal/mol@LB@Unfolding Energy - mRNA 6.12952 kcal/mol@LB@Unfolding Energy - sRNA 6.66922 kcal/mol@LB@@LB@Position - mRNA 192 -- 225@LB@Position - sRNA 39 -- 65@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 52 |
0.003856 |
0.237 |
b2844 |
yqeF |
-12.45 |
0.034706 |
43 -- 109 |
1 -- 67 |
short chain acyltransferase |
|
_____________42______________________________________________________________________110\n_____________|_______________________________________________________________________|\n5'-CCA...CUCUA____U__________________A_____U___U_CC___UAU____C____UGCUGCUC________UU_CUUUG...UCG-3'\n______________UUGG_GGGUUAGUGGU__UGCAA___CCU_ACG_G__AGU___GUCU_UGAC________AGGCAUAU__C\n______________||||_:::|:|||||:__|||||___||:_||:_|__|:|___:|||_||||________||||||||__|\n______________AACC_UUUAGUCACCG__ACGUU___GGG_UGU_C__UUA___UAGA_ACUG________UCCGUAUA__G\n3'-UUU...UAUAC____U___________UU_____ACC___U_____UU___UUU____C____UUAUU___________UU_-5'\n_____________|______________________________________________________________________|\n_____________68_____________________________________________________________________1\n |
100 -- 106 |
4 -- 10 |
-44.1841 kcal/mol |
19.5714 kcal/mol |
12.1612 kcal/mol |
42 110@LB@ | |@LB@5'-CCA...CUCUA U A U U CC UAU C UGCUGCUC UU CUUUG...UCG-3'@LB@ UUGG GGGUUAGUGGU UGCAA CCU ACG G AGU GUCU UGAC AGGCAUAU C@LB@ |||| :::|:|||||: ||||| ||: ||: | |:| :||| |||| |||||||| |@LB@ AACC UUUAGUCACCG ACGUU GGG UGU C UUA UAGA ACUG UCCGUAUA G@LB@3'-UUU...UAUAC U UU ACC U UU UUU C UUAUU UU -5'@LB@ | |@LB@ 68 1@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -44.1841 kcal/mol@LB@Unfolding Energy - mRNA 19.5714 kcal/mol@LB@Unfolding Energy - sRNA 12.1612 kcal/mol@LB@@LB@Position - mRNA 43 -- 109@LB@Position - sRNA 1 -- 67@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 4 -- 10@LB@ |
